Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03653 and BACOVA_03654 are separated by 128 nucleotides BACOVA_03654 and BACOVA_03655 are separated by 142 nucleotides
BACOVA_03653: BACOVA_03653 - outer membrane protein, OMP85 family, at 485,709 to 488,051
_03653
BACOVA_03654: BACOVA_03654 - hypothetical protein, at 488,180 to 489,091
_03654
BACOVA_03655: BACOVA_03655 - ABC transporter, ATP-binding protein, at 489,234 to 491,189
_03655
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 487.279 kb on + strand, within BACOVA_03653 at 487.279 kb on + strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.283 kb on + strand, within BACOVA_03653 at 487.284 kb on - strand, within BACOVA_03653 at 487.322 kb on + strand, within BACOVA_03653 at 487.326 kb on + strand, within BACOVA_03653 at 487.327 kb on - strand, within BACOVA_03653 at 487.467 kb on - strand, within BACOVA_03653 at 487.487 kb on + strand, within BACOVA_03653 at 487.538 kb on + strand, within BACOVA_03653 at 487.659 kb on - strand, within BACOVA_03653 at 487.677 kb on + strand, within BACOVA_03653 at 487.704 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.745 kb on - strand, within BACOVA_03653 at 487.911 kb on - strand at 487.911 kb on - strand at 487.986 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.080 kb on + strand at 488.090 kb on + strand at 488.090 kb on + strand at 488.091 kb on - strand at 488.112 kb on + strand at 488.113 kb on - strand at 488.113 kb on - strand at 488.156 kb on + strand at 489.057 kb on + strand at 489.072 kb on - strand at 489.107 kb on + strand at 489.112 kb on + strand at 489.158 kb on - strand at 489.162 kb on + strand at 489.162 kb on + strand at 489.170 kb on + strand at 489.170 kb on + strand at 489.174 kb on + strand at 489.174 kb on + strand at 489.177 kb on + strand at 489.177 kb on + strand at 489.185 kb on - strand at 489.306 kb on - strand at 489.371 kb on - strand at 489.371 kb on - strand at 489.407 kb on - strand at 489.424 kb on + strand at 489.424 kb on + strand at 489.435 kb on + strand, within BACOVA_03655 at 489.436 kb on - strand, within BACOVA_03655 at 489.507 kb on - strand, within BACOVA_03655 at 489.508 kb on + strand, within BACOVA_03655 at 489.509 kb on - strand, within BACOVA_03655 at 489.509 kb on - strand, within BACOVA_03655 at 489.567 kb on + strand, within BACOVA_03655 at 489.582 kb on + strand, within BACOVA_03655 at 489.596 kb on - strand, within BACOVA_03655 at 489.596 kb on - strand, within BACOVA_03655 at 489.713 kb on + strand, within BACOVA_03655 at 489.740 kb on + strand, within BACOVA_03655 at 489.741 kb on - strand, within BACOVA_03655 at 489.741 kb on - strand, within BACOVA_03655 at 489.770 kb on - strand, within BACOVA_03655 at 489.828 kb on - strand, within BACOVA_03655 at 489.854 kb on + strand, within BACOVA_03655 at 489.875 kb on - strand, within BACOVA_03655 at 489.875 kb on - strand, within BACOVA_03655 at 489.910 kb on + strand, within BACOVA_03655 at 489.914 kb on + strand, within BACOVA_03655 at 489.936 kb on + strand, within BACOVA_03655 at 489.954 kb on + strand, within BACOVA_03655 at 489.955 kb on - strand, within BACOVA_03655 at 489.967 kb on - strand, within BACOVA_03655 at 489.979 kb on + strand, within BACOVA_03655 at 490.050 kb on - strand, within BACOVA_03655
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 487,279 + BACOVA_03653 0.67 -0.9 487,279 + BACOVA_03653 0.67 -0.4 487,282 - BACOVA_03653 0.67 -0.7 487,282 - BACOVA_03653 0.67 -0.2 487,283 + BACOVA_03653 0.67 -1.3 487,284 - BACOVA_03653 0.67 +1.0 487,322 + BACOVA_03653 0.69 -1.7 487,326 + BACOVA_03653 0.69 -0.2 487,327 - BACOVA_03653 0.69 -1.0 487,467 - BACOVA_03653 0.75 +0.3 487,487 + BACOVA_03653 0.76 -0.9 487,538 + BACOVA_03653 0.78 -0.9 487,659 - BACOVA_03653 0.83 +0.6 487,677 + BACOVA_03653 0.84 -0.2 487,704 + BACOVA_03653 0.85 +1.0 487,744 + BACOVA_03653 0.87 -0.3 487,744 + BACOVA_03653 0.87 -1.0 487,745 - BACOVA_03653 0.87 -1.3 487,911 - +1.0 487,911 - +1.6 487,986 + +0.2 488,049 + +0.4 488,049 + +0.2 488,049 + +1.3 488,049 + -0.2 488,080 + +0.2 488,090 + -1.2 488,090 + -1.5 488,091 - -0.1 488,112 + +0.4 488,113 - +0.6 488,113 - -1.5 488,156 + +0.0 489,057 + -0.6 489,072 - -0.1 489,107 + +0.2 489,112 + +0.2 489,158 - -0.5 489,162 + -0.3 489,162 + +0.3 489,170 + +0.2 489,170 + -1.3 489,174 + +0.5 489,174 + -0.3 489,177 + -0.1 489,177 + +1.4 489,185 - +0.5 489,306 - -0.4 489,371 - -1.1 489,371 - -0.3 489,407 - +0.8 489,424 + +1.3 489,424 + +0.1 489,435 + BACOVA_03655 0.10 -1.3 489,436 - BACOVA_03655 0.10 -2.4 489,507 - BACOVA_03655 0.14 -0.9 489,508 + BACOVA_03655 0.14 -1.9 489,509 - BACOVA_03655 0.14 -1.9 489,509 - BACOVA_03655 0.14 +1.1 489,567 + BACOVA_03655 0.17 +0.4 489,582 + BACOVA_03655 0.18 -0.2 489,596 - BACOVA_03655 0.19 -1.0 489,596 - BACOVA_03655 0.19 -0.4 489,713 + BACOVA_03655 0.24 -0.1 489,740 + BACOVA_03655 0.26 +0.0 489,741 - BACOVA_03655 0.26 -0.1 489,741 - BACOVA_03655 0.26 +1.2 489,770 - BACOVA_03655 0.27 -0.5 489,828 - BACOVA_03655 0.30 +0.4 489,854 + BACOVA_03655 0.32 -0.1 489,875 - BACOVA_03655 0.33 -0.7 489,875 - BACOVA_03655 0.33 +0.9 489,910 + BACOVA_03655 0.35 -0.1 489,914 + BACOVA_03655 0.35 +1.4 489,936 + BACOVA_03655 0.36 -1.4 489,954 + BACOVA_03655 0.37 -0.4 489,955 - BACOVA_03655 0.37 +0.2 489,967 - BACOVA_03655 0.37 -0.8 489,979 + BACOVA_03655 0.38 -0.4 490,050 - BACOVA_03655 0.42 -1.3
Or see this region's nucleotide sequence