Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03592 and BACOVA_03593 are separated by 31 nucleotides BACOVA_03593 and BACOVA_03594 are separated by 71 nucleotides BACOVA_03594 and BACOVA_03595 are separated by 119 nucleotides BACOVA_03595 and BACOVA_03596 are separated by 150 nucleotides
BACOVA_03592: BACOVA_03592 - arginine repressor, C-terminal domain protein, at 386,677 to 387,150
_03592
BACOVA_03593: BACOVA_03593 - hypothetical protein, at 387,182 to 387,346
_03593
BACOVA_03594: BACOVA_03594 - RNA polymerase sigma-70 factor, at 387,418 to 387,990
_03594
BACOVA_03595: BACOVA_03595 - sigma factor regulatory protein, FecR/PupR family, at 388,110 to 389,132
_03595
BACOVA_03596: BACOVA_03596 - TonB-linked outer membrane protein, SusC/RagA family, at 389,283 to 392,858
_03596
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 387.153 kb on + strand at 387.155 kb on + strand at 387.188 kb on + strand at 387.189 kb on - strand at 387.189 kb on - strand at 387.265 kb on - strand, within BACOVA_03593 at 387.274 kb on - strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.276 kb on - strand, within BACOVA_03593 at 387.276 kb on - strand, within BACOVA_03593 at 387.283 kb on + strand, within BACOVA_03593 at 387.285 kb on + strand, within BACOVA_03593 at 387.286 kb on - strand, within BACOVA_03593 at 387.286 kb on - strand, within BACOVA_03593 at 387.286 kb on - strand, within BACOVA_03593 at 387.334 kb on + strand at 387.341 kb on + strand at 387.384 kb on - strand at 387.401 kb on - strand at 387.417 kb on + strand at 387.418 kb on - strand at 387.422 kb on + strand at 387.423 kb on - strand at 387.432 kb on + strand at 387.465 kb on + strand at 387.465 kb on + strand at 387.466 kb on - strand at 387.466 kb on - strand at 387.496 kb on + strand, within BACOVA_03594 at 387.499 kb on + strand, within BACOVA_03594 at 387.507 kb on - strand, within BACOVA_03594 at 387.509 kb on + strand, within BACOVA_03594 at 387.509 kb on + strand, within BACOVA_03594 at 387.510 kb on - strand, within BACOVA_03594 at 387.510 kb on - strand, within BACOVA_03594 at 387.526 kb on + strand, within BACOVA_03594 at 387.526 kb on + strand, within BACOVA_03594 at 387.530 kb on - strand, within BACOVA_03594 at 387.609 kb on - strand, within BACOVA_03594 at 387.668 kb on + strand, within BACOVA_03594 at 387.705 kb on + strand, within BACOVA_03594 at 387.705 kb on + strand, within BACOVA_03594 at 387.706 kb on - strand, within BACOVA_03594 at 387.706 kb on - strand, within BACOVA_03594 at 387.751 kb on + strand, within BACOVA_03594 at 387.751 kb on + strand, within BACOVA_03594 at 387.751 kb on + strand, within BACOVA_03594 at 387.752 kb on - strand, within BACOVA_03594 at 387.752 kb on - strand, within BACOVA_03594 at 387.847 kb on - strand, within BACOVA_03594 at 387.854 kb on - strand, within BACOVA_03594 at 387.855 kb on + strand, within BACOVA_03594 at 387.876 kb on - strand, within BACOVA_03594 at 387.929 kb on + strand, within BACOVA_03594 at 387.930 kb on - strand, within BACOVA_03594 at 387.949 kb on + strand at 387.950 kb on - strand at 387.953 kb on + strand at 387.963 kb on + strand at 387.963 kb on + strand at 387.971 kb on + strand at 387.972 kb on - strand at 388.016 kb on + strand at 388.016 kb on + strand at 388.078 kb on - strand at 388.090 kb on + strand at 388.105 kb on - strand at 388.120 kb on + strand at 388.121 kb on - strand at 388.121 kb on - strand at 388.131 kb on - strand at 388.133 kb on - strand at 388.166 kb on + strand at 388.172 kb on - strand at 388.195 kb on + strand at 388.195 kb on + strand at 388.252 kb on - strand, within BACOVA_03595 at 388.252 kb on - strand, within BACOVA_03595 at 388.252 kb on - strand, within BACOVA_03595 at 388.256 kb on - strand, within BACOVA_03595 at 388.256 kb on - strand, within BACOVA_03595 at 388.265 kb on - strand, within BACOVA_03595 at 388.271 kb on + strand, within BACOVA_03595 at 388.271 kb on + strand, within BACOVA_03595 at 388.273 kb on + strand, within BACOVA_03595 at 388.273 kb on + strand, within BACOVA_03595 at 388.274 kb on - strand, within BACOVA_03595 at 388.281 kb on - strand, within BACOVA_03595 at 388.294 kb on + strand, within BACOVA_03595 at 388.295 kb on - strand, within BACOVA_03595 at 388.295 kb on - strand, within BACOVA_03595 at 388.395 kb on - strand, within BACOVA_03595 at 388.419 kb on + strand, within BACOVA_03595 at 388.420 kb on - strand, within BACOVA_03595 at 388.501 kb on + strand, within BACOVA_03595 at 388.512 kb on - strand, within BACOVA_03595 at 388.539 kb on + strand, within BACOVA_03595 at 388.548 kb on + strand, within BACOVA_03595 at 388.549 kb on - strand, within BACOVA_03595 at 388.549 kb on - strand, within BACOVA_03595 at 388.649 kb on - strand, within BACOVA_03595 at 388.666 kb on + strand, within BACOVA_03595 at 388.713 kb on - strand, within BACOVA_03595 at 388.720 kb on + strand, within BACOVA_03595 at 388.727 kb on + strand, within BACOVA_03595 at 388.743 kb on - strand, within BACOVA_03595 at 388.743 kb on - strand, within BACOVA_03595 at 388.785 kb on + strand, within BACOVA_03595 at 388.786 kb on - strand, within BACOVA_03595 at 388.786 kb on - strand, within BACOVA_03595 at 388.786 kb on - strand, within BACOVA_03595 at 388.787 kb on + strand, within BACOVA_03595 at 388.790 kb on + strand, within BACOVA_03595 at 388.790 kb on + strand, within BACOVA_03595 at 388.790 kb on + strand, within BACOVA_03595 at 388.822 kb on + strand, within BACOVA_03595 at 388.822 kb on + strand, within BACOVA_03595 at 388.844 kb on + strand, within BACOVA_03595 at 388.851 kb on - strand, within BACOVA_03595 at 388.897 kb on - strand, within BACOVA_03595 at 388.978 kb on + strand, within BACOVA_03595 at 389.000 kb on + strand, within BACOVA_03595 at 389.001 kb on - strand, within BACOVA_03595 at 389.064 kb on + strand at 389.064 kb on + strand at 389.065 kb on - strand at 389.188 kb on + strand at 389.195 kb on - strand at 389.195 kb on - strand at 389.297 kb on + strand at 389.342 kb on - strand at 389.361 kb on - strand at 389.368 kb on + strand at 389.372 kb on - strand at 389.375 kb on + strand at 389.375 kb on + strand at 389.379 kb on - strand at 389.383 kb on + strand at 389.384 kb on - strand at 389.417 kb on + strand at 389.418 kb on - strand at 389.418 kb on - strand at 389.418 kb on - strand at 389.422 kb on - strand at 389.489 kb on - strand at 389.544 kb on - strand at 389.577 kb on - strand at 389.657 kb on + strand, within BACOVA_03596 at 389.699 kb on + strand, within BACOVA_03596 at 389.699 kb on + strand, within BACOVA_03596 at 389.738 kb on + strand, within BACOVA_03596 at 389.763 kb on - strand, within BACOVA_03596 at 389.823 kb on - strand, within BACOVA_03596 at 389.835 kb on - strand, within BACOVA_03596 at 389.841 kb on + strand, within BACOVA_03596 at 389.841 kb on + strand, within BACOVA_03596 at 389.841 kb on + strand, within BACOVA_03596 at 389.842 kb on - strand, within BACOVA_03596 at 389.842 kb on - strand, within BACOVA_03596 at 389.843 kb on + strand, within BACOVA_03596 at 389.850 kb on + strand, within BACOVA_03596 at 389.850 kb on + strand, within BACOVA_03596 at 389.852 kb on + strand, within BACOVA_03596 at 389.898 kb on - strand, within BACOVA_03596 at 389.898 kb on - strand, within BACOVA_03596 at 389.932 kb on + strand, within BACOVA_03596 at 389.932 kb on + strand, within BACOVA_03596 at 389.933 kb on - strand, within BACOVA_03596 at 389.952 kb on - strand, within BACOVA_03596 at 389.999 kb on + strand, within BACOVA_03596 at 390.007 kb on + strand, within BACOVA_03596 at 390.008 kb on - strand, within BACOVA_03596 at 390.027 kb on - strand, within BACOVA_03596 at 390.059 kb on + strand, within BACOVA_03596 at 390.060 kb on - strand, within BACOVA_03596 at 390.060 kb on - strand, within BACOVA_03596 at 390.060 kb on - strand, within BACOVA_03596 at 390.062 kb on + strand, within BACOVA_03596 at 390.063 kb on - strand, within BACOVA_03596 at 390.080 kb on + strand, within BACOVA_03596 at 390.105 kb on - strand, within BACOVA_03596 at 390.113 kb on + strand, within BACOVA_03596
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 387,153 + -1.3 387,155 + -0.4 387,188 + -3.4 387,189 - -0.3 387,189 - +1.0 387,265 - BACOVA_03593 0.50 +1.5 387,274 - BACOVA_03593 0.56 -0.4 387,275 + BACOVA_03593 0.56 -0.3 387,275 + BACOVA_03593 0.56 -0.4 387,275 + BACOVA_03593 0.56 +1.4 387,275 + BACOVA_03593 0.56 -1.1 387,275 + BACOVA_03593 0.56 +2.6 387,276 - BACOVA_03593 0.57 -1.2 387,276 - BACOVA_03593 0.57 +0.2 387,283 + BACOVA_03593 0.61 +1.3 387,285 + BACOVA_03593 0.62 +0.1 387,286 - BACOVA_03593 0.63 +0.3 387,286 - BACOVA_03593 0.63 -1.4 387,286 - BACOVA_03593 0.63 +1.7 387,334 + -0.4 387,341 + -0.6 387,384 - -0.4 387,401 - -0.1 387,417 + +0.6 387,418 - -0.1 387,422 + -0.6 387,423 - -1.1 387,432 + -0.5 387,465 + -0.0 387,465 + +2.5 387,466 - -0.9 387,466 - +1.6 387,496 + BACOVA_03594 0.14 +1.8 387,499 + BACOVA_03594 0.14 -0.5 387,507 - BACOVA_03594 0.16 +0.1 387,509 + BACOVA_03594 0.16 -1.0 387,509 + BACOVA_03594 0.16 -2.0 387,510 - BACOVA_03594 0.16 -1.3 387,510 - BACOVA_03594 0.16 -1.4 387,526 + BACOVA_03594 0.19 -0.9 387,526 + BACOVA_03594 0.19 -1.3 387,530 - BACOVA_03594 0.20 +2.4 387,609 - BACOVA_03594 0.33 -1.0 387,668 + BACOVA_03594 0.44 -0.2 387,705 + BACOVA_03594 0.50 +0.1 387,705 + BACOVA_03594 0.50 +0.1 387,706 - BACOVA_03594 0.50 -1.2 387,706 - BACOVA_03594 0.50 -0.2 387,751 + BACOVA_03594 0.58 +1.9 387,751 + BACOVA_03594 0.58 +1.3 387,751 + BACOVA_03594 0.58 -1.3 387,752 - BACOVA_03594 0.58 -0.3 387,752 - BACOVA_03594 0.58 -1.9 387,847 - BACOVA_03594 0.75 +0.5 387,854 - BACOVA_03594 0.76 +0.6 387,855 + BACOVA_03594 0.76 +0.2 387,876 - BACOVA_03594 0.80 -1.0 387,929 + BACOVA_03594 0.89 -0.5 387,930 - BACOVA_03594 0.89 +0.1 387,949 + +0.9 387,950 - -0.8 387,953 + +0.1 387,963 + -0.3 387,963 + +1.0 387,971 + -1.2 387,972 - +0.6 388,016 + -0.3 388,016 + +0.8 388,078 - +2.6 388,090 + -1.3 388,105 - +1.8 388,120 + -0.0 388,121 - -0.2 388,121 - -1.5 388,131 - -0.8 388,133 - -0.5 388,166 + -0.0 388,172 - +0.1 388,195 + -0.8 388,195 + -0.8 388,252 - BACOVA_03595 0.14 +0.5 388,252 - BACOVA_03595 0.14 -1.5 388,252 - BACOVA_03595 0.14 -1.7 388,256 - BACOVA_03595 0.14 -0.6 388,256 - BACOVA_03595 0.14 -1.0 388,265 - BACOVA_03595 0.15 +0.0 388,271 + BACOVA_03595 0.16 -0.9 388,271 + BACOVA_03595 0.16 +0.1 388,273 + BACOVA_03595 0.16 -0.6 388,273 + BACOVA_03595 0.16 -0.7 388,274 - BACOVA_03595 0.16 +0.2 388,281 - BACOVA_03595 0.17 +1.9 388,294 + BACOVA_03595 0.18 -0.9 388,295 - BACOVA_03595 0.18 +1.7 388,295 - BACOVA_03595 0.18 -0.0 388,395 - BACOVA_03595 0.28 -1.6 388,419 + BACOVA_03595 0.30 +0.8 388,420 - BACOVA_03595 0.30 +0.5 388,501 + BACOVA_03595 0.38 -0.4 388,512 - BACOVA_03595 0.39 -0.4 388,539 + BACOVA_03595 0.42 -0.3 388,548 + BACOVA_03595 0.43 -0.2 388,549 - BACOVA_03595 0.43 -0.4 388,549 - BACOVA_03595 0.43 -1.5 388,649 - BACOVA_03595 0.53 -0.0 388,666 + BACOVA_03595 0.54 +0.7 388,713 - BACOVA_03595 0.59 -1.2 388,720 + BACOVA_03595 0.60 +0.3 388,727 + BACOVA_03595 0.60 -0.4 388,743 - BACOVA_03595 0.62 -0.9 388,743 - BACOVA_03595 0.62 +0.6 388,785 + BACOVA_03595 0.66 -1.9 388,786 - BACOVA_03595 0.66 -0.2 388,786 - BACOVA_03595 0.66 -1.2 388,786 - BACOVA_03595 0.66 -0.2 388,787 + BACOVA_03595 0.66 +0.5 388,790 + BACOVA_03595 0.66 -0.8 388,790 + BACOVA_03595 0.66 -0.4 388,790 + BACOVA_03595 0.66 +0.0 388,822 + BACOVA_03595 0.70 +0.8 388,822 + BACOVA_03595 0.70 +1.1 388,844 + BACOVA_03595 0.72 -0.9 388,851 - BACOVA_03595 0.72 +3.6 388,897 - BACOVA_03595 0.77 -0.0 388,978 + BACOVA_03595 0.85 -0.3 389,000 + BACOVA_03595 0.87 -0.3 389,001 - BACOVA_03595 0.87 +0.7 389,064 + -0.7 389,064 + -0.2 389,065 - +1.3 389,188 + +0.4 389,195 - +0.3 389,195 - -0.6 389,297 + -1.8 389,342 - +0.1 389,361 - +0.6 389,368 + -1.4 389,372 - +1.1 389,375 + -0.1 389,375 + +2.3 389,379 - -0.2 389,383 + -0.2 389,384 - -0.6 389,417 + -0.1 389,418 - -2.6 389,418 - -0.8 389,418 - -0.9 389,422 - +0.2 389,489 - -0.6 389,544 - -0.8 389,577 - +1.2 389,657 + BACOVA_03596 0.10 +0.1 389,699 + BACOVA_03596 0.12 +0.4 389,699 + BACOVA_03596 0.12 -1.0 389,738 + BACOVA_03596 0.13 +1.1 389,763 - BACOVA_03596 0.13 +1.7 389,823 - BACOVA_03596 0.15 -0.1 389,835 - BACOVA_03596 0.15 -1.0 389,841 + BACOVA_03596 0.16 +0.8 389,841 + BACOVA_03596 0.16 +1.4 389,841 + BACOVA_03596 0.16 +1.1 389,842 - BACOVA_03596 0.16 -1.3 389,842 - BACOVA_03596 0.16 +0.2 389,843 + BACOVA_03596 0.16 -1.5 389,850 + BACOVA_03596 0.16 +1.1 389,850 + BACOVA_03596 0.16 +0.2 389,852 + BACOVA_03596 0.16 -0.7 389,898 - BACOVA_03596 0.17 -2.1 389,898 - BACOVA_03596 0.17 -1.5 389,932 + BACOVA_03596 0.18 +0.4 389,932 + BACOVA_03596 0.18 +1.0 389,933 - BACOVA_03596 0.18 -0.2 389,952 - BACOVA_03596 0.19 +1.0 389,999 + BACOVA_03596 0.20 -1.9 390,007 + BACOVA_03596 0.20 +0.1 390,008 - BACOVA_03596 0.20 +0.0 390,027 - BACOVA_03596 0.21 +1.4 390,059 + BACOVA_03596 0.22 -0.6 390,060 - BACOVA_03596 0.22 -0.4 390,060 - BACOVA_03596 0.22 +0.3 390,060 - BACOVA_03596 0.22 +0.1 390,062 + BACOVA_03596 0.22 -0.3 390,063 - BACOVA_03596 0.22 +0.4 390,080 + BACOVA_03596 0.22 -2.0 390,105 - BACOVA_03596 0.23 +0.8 390,113 + BACOVA_03596 0.23 +1.1
Or see this region's nucleotide sequence