Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03358

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03357 and BACOVA_03358 are separated by 119 nucleotidesBACOVA_03358 and BACOVA_03359 are separated by 109 nucleotides BACOVA_03357: BACOVA_03357 - antioxidant, AhpC/TSA family, at 53,382 to 54,560 _03357 BACOVA_03358: BACOVA_03358 - peptidase dimerization domain protein, at 54,680 to 55,747 _03358 BACOVA_03359: BACOVA_03359 - AMP-binding enzyme, at 55,857 to 57,671 _03359 Position (kb) 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 53.708 kb on - strand, within BACOVA_03357at 53.741 kb on - strand, within BACOVA_03357at 53.744 kb on + strand, within BACOVA_03357at 53.772 kb on - strand, within BACOVA_03357at 53.831 kb on + strand, within BACOVA_03357at 53.834 kb on + strand, within BACOVA_03357at 53.869 kb on + strand, within BACOVA_03357at 53.869 kb on + strand, within BACOVA_03357at 53.905 kb on + strand, within BACOVA_03357at 53.950 kb on + strand, within BACOVA_03357at 53.950 kb on + strand, within BACOVA_03357at 53.963 kb on + strand, within BACOVA_03357at 53.964 kb on - strand, within BACOVA_03357at 53.967 kb on + strand, within BACOVA_03357at 53.970 kb on + strand, within BACOVA_03357at 53.970 kb on + strand, within BACOVA_03357at 53.971 kb on - strand, within BACOVA_03357at 53.971 kb on - strand, within BACOVA_03357at 53.980 kb on + strand, within BACOVA_03357at 53.988 kb on - strand, within BACOVA_03357at 54.039 kb on - strand, within BACOVA_03357at 54.152 kb on - strand, within BACOVA_03357at 54.223 kb on - strand, within BACOVA_03357at 54.226 kb on + strand, within BACOVA_03357at 54.226 kb on + strand, within BACOVA_03357at 54.227 kb on - strand, within BACOVA_03357at 54.227 kb on - strand, within BACOVA_03357at 54.240 kb on + strand, within BACOVA_03357at 54.241 kb on - strand, within BACOVA_03357at 54.241 kb on - strand, within BACOVA_03357at 54.247 kb on + strand, within BACOVA_03357at 54.248 kb on - strand, within BACOVA_03357at 54.250 kb on + strand, within BACOVA_03357at 54.250 kb on + strand, within BACOVA_03357at 54.347 kb on + strand, within BACOVA_03357at 54.350 kb on + strand, within BACOVA_03357at 54.356 kb on + strand, within BACOVA_03357at 54.358 kb on + strand, within BACOVA_03357at 54.359 kb on - strand, within BACOVA_03357at 54.359 kb on - strand, within BACOVA_03357at 54.362 kb on + strand, within BACOVA_03357at 54.443 kb on + strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.445 kb on + strandat 54.445 kb on + strandat 54.445 kb on + strandat 54.445 kb on + strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.447 kb on + strandat 54.448 kb on - strandat 54.453 kb on - strandat 54.456 kb on + strandat 54.457 kb on - strandat 54.507 kb on - strandat 54.515 kb on - strandat 54.515 kb on - strandat 54.567 kb on + strandat 54.567 kb on + strandat 54.567 kb on + strandat 54.575 kb on + strandat 54.590 kb on + strandat 54.591 kb on - strandat 54.648 kb on + strandat 54.666 kb on + strandat 54.666 kb on + strandat 54.667 kb on - strandat 54.667 kb on - strandat 54.675 kb on - strandat 54.675 kb on - strandat 54.681 kb on + strandat 54.701 kb on + strandat 54.708 kb on - strandat 54.816 kb on - strand, within BACOVA_03358at 54.868 kb on + strand, within BACOVA_03358at 54.949 kb on + strand, within BACOVA_03358at 54.950 kb on - strand, within BACOVA_03358at 54.950 kb on - strand, within BACOVA_03358at 55.138 kb on + strand, within BACOVA_03358at 55.148 kb on + strand, within BACOVA_03358at 55.160 kb on - strand, within BACOVA_03358at 55.160 kb on - strand, within BACOVA_03358at 55.160 kb on - strand, within BACOVA_03358at 55.217 kb on + strand, within BACOVA_03358at 55.217 kb on + strand, within BACOVA_03358at 55.218 kb on - strand, within BACOVA_03358at 55.221 kb on - strand, within BACOVA_03358at 55.275 kb on - strand, within BACOVA_03358at 55.359 kb on + strand, within BACOVA_03358at 55.360 kb on - strand, within BACOVA_03358at 55.391 kb on + strand, within BACOVA_03358at 55.391 kb on + strand, within BACOVA_03358at 55.410 kb on - strand, within BACOVA_03358at 55.441 kb on + strand, within BACOVA_03358at 55.442 kb on - strand, within BACOVA_03358at 55.457 kb on + strand, within BACOVA_03358at 55.457 kb on + strand, within BACOVA_03358at 55.458 kb on - strand, within BACOVA_03358at 55.458 kb on - strand, within BACOVA_03358at 55.507 kb on + strand, within BACOVA_03358at 55.526 kb on + strand, within BACOVA_03358at 55.538 kb on - strand, within BACOVA_03358at 55.547 kb on - strand, within BACOVA_03358at 55.547 kb on - strand, within BACOVA_03358at 55.576 kb on + strand, within BACOVA_03358at 55.591 kb on + strand, within BACOVA_03358at 55.615 kb on + strand, within BACOVA_03358at 55.615 kb on + strand, within BACOVA_03358at 55.615 kb on + strand, within BACOVA_03358at 55.685 kb on - strandat 55.687 kb on + strandat 55.687 kb on + strandat 55.700 kb on - strandat 55.709 kb on + strandat 55.729 kb on - strandat 55.729 kb on - strandat 55.736 kb on - strandat 55.765 kb on + strandat 55.765 kb on + strandat 55.765 kb on + strandat 55.766 kb on - strandat 55.767 kb on + strandat 55.772 kb on + strandat 55.806 kb on - strandat 55.824 kb on + strandat 55.824 kb on + strandat 55.838 kb on - strandat 55.841 kb on + strandat 55.844 kb on + strandat 55.863 kb on + strandat 55.873 kb on + strandat 55.873 kb on + strandat 55.874 kb on - strandat 55.925 kb on - strandat 55.930 kb on - strandat 56.003 kb on + strandat 56.079 kb on + strand, within BACOVA_03359at 56.080 kb on - strand, within BACOVA_03359at 56.080 kb on - strand, within BACOVA_03359at 56.084 kb on - strand, within BACOVA_03359at 56.157 kb on + strand, within BACOVA_03359at 56.157 kb on + strand, within BACOVA_03359at 56.159 kb on + strand, within BACOVA_03359at 56.160 kb on - strand, within BACOVA_03359at 56.206 kb on - strand, within BACOVA_03359at 56.211 kb on + strand, within BACOVA_03359at 56.313 kb on + strand, within BACOVA_03359at 56.314 kb on - strand, within BACOVA_03359at 56.354 kb on + strand, within BACOVA_03359at 56.360 kb on + strand, within BACOVA_03359at 56.375 kb on + strand, within BACOVA_03359at 56.409 kb on - strand, within BACOVA_03359at 56.416 kb on - strand, within BACOVA_03359at 56.418 kb on - strand, within BACOVA_03359at 56.418 kb on - strand, within BACOVA_03359at 56.418 kb on - strand, within BACOVA_03359at 56.527 kb on + strand, within BACOVA_03359at 56.528 kb on - strand, within BACOVA_03359at 56.528 kb on - strand, within BACOVA_03359at 56.528 kb on - strand, within BACOVA_03359at 56.548 kb on + strand, within BACOVA_03359at 56.577 kb on + strand, within BACOVA_03359at 56.586 kb on - strand, within BACOVA_03359at 56.632 kb on + strand, within BACOVA_03359at 56.633 kb on - strand, within BACOVA_03359at 56.633 kb on - strand, within BACOVA_03359at 56.700 kb on + strand, within BACOVA_03359at 56.700 kb on + strand, within BACOVA_03359at 56.701 kb on - strand, within BACOVA_03359

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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53,708 - BACOVA_03357 0.28 -0.1
53,741 - BACOVA_03357 0.30 -0.8
53,744 + BACOVA_03357 0.31 -2.1
53,772 - BACOVA_03357 0.33 -1.3
53,831 + BACOVA_03357 0.38 +0.4
53,834 + BACOVA_03357 0.38 +0.2
53,869 + BACOVA_03357 0.41 -0.7
53,869 + BACOVA_03357 0.41 +0.7
53,905 + BACOVA_03357 0.44 +1.0
53,950 + BACOVA_03357 0.48 -0.2
53,950 + BACOVA_03357 0.48 +0.2
53,963 + BACOVA_03357 0.49 +0.7
53,964 - BACOVA_03357 0.49 +0.4
53,967 + BACOVA_03357 0.50 -0.4
53,970 + BACOVA_03357 0.50 -0.9
53,970 + BACOVA_03357 0.50 +0.3
53,971 - BACOVA_03357 0.50 +2.3
53,971 - BACOVA_03357 0.50 +0.1
53,980 + BACOVA_03357 0.51 +0.8
53,988 - BACOVA_03357 0.51 +2.8
54,039 - BACOVA_03357 0.56 +0.0
54,152 - BACOVA_03357 0.65 -1.8
54,223 - BACOVA_03357 0.71 -0.1
54,226 + BACOVA_03357 0.72 +1.4
54,226 + BACOVA_03357 0.72 -1.2
54,227 - BACOVA_03357 0.72 -0.5
54,227 - BACOVA_03357 0.72 -0.1
54,240 + BACOVA_03357 0.73 +1.5
54,241 - BACOVA_03357 0.73 +0.4
54,241 - BACOVA_03357 0.73 +0.5
54,247 + BACOVA_03357 0.73 -0.2
54,248 - BACOVA_03357 0.73 -1.1
54,250 + BACOVA_03357 0.74 -1.2
54,250 + BACOVA_03357 0.74 +0.1
54,347 + BACOVA_03357 0.82 -1.4
54,350 + BACOVA_03357 0.82 +1.6
54,356 + BACOVA_03357 0.83 -0.2
54,358 + BACOVA_03357 0.83 -1.2
54,359 - BACOVA_03357 0.83 +0.4
54,359 - BACOVA_03357 0.83 -1.4
54,362 + BACOVA_03357 0.83 +0.1
54,443 + -0.6
54,444 - -0.8
54,444 - -0.1
54,444 - -1.4
54,444 - +1.0
54,444 - +0.1
54,445 + +0.4
54,445 + -0.9
54,445 + +1.6
54,445 + -0.4
54,446 - -1.4
54,446 - +0.1
54,446 - -0.6
54,446 - +0.2
54,446 - -0.6
54,446 - +0.1
54,447 + +0.1
54,448 - +0.8
54,453 - +0.6
54,456 + +0.9
54,457 - -0.4
54,507 - +0.6
54,515 - +0.6
54,515 - +0.4
54,567 + -0.0
54,567 + +0.2
54,567 + -0.8
54,575 + +0.2
54,590 + +0.0
54,591 - +1.8
54,648 + -0.3
54,666 + +0.6
54,666 + -0.4
54,667 - +1.1
54,667 - +1.5
54,675 - -1.3
54,675 - -0.4
54,681 + +0.8
54,701 + -1.6
54,708 - -2.4
54,816 - BACOVA_03358 0.13 -2.3
54,868 + BACOVA_03358 0.18 -2.0
54,949 + BACOVA_03358 0.25 -2.0
54,950 - BACOVA_03358 0.25 -3.4
54,950 - BACOVA_03358 0.25 -2.2
55,138 + BACOVA_03358 0.43 -3.4
55,148 + BACOVA_03358 0.44 -1.3
55,160 - BACOVA_03358 0.45 -1.0
55,160 - BACOVA_03358 0.45 -0.4
55,160 - BACOVA_03358 0.45 -1.9
55,217 + BACOVA_03358 0.50 -3.9
55,217 + BACOVA_03358 0.50 -3.2
55,218 - BACOVA_03358 0.50 -4.4
55,221 - BACOVA_03358 0.51 -0.4
55,275 - BACOVA_03358 0.56 -4.1
55,359 + BACOVA_03358 0.64 -4.0
55,360 - BACOVA_03358 0.64 -0.4
55,391 + BACOVA_03358 0.67 -1.8
55,391 + BACOVA_03358 0.67 -2.8
55,410 - BACOVA_03358 0.68 -1.2
55,441 + BACOVA_03358 0.71 -2.9
55,442 - BACOVA_03358 0.71 -3.2
55,457 + BACOVA_03358 0.73 -3.8
55,457 + BACOVA_03358 0.73 -2.4
55,458 - BACOVA_03358 0.73 -1.4
55,458 - BACOVA_03358 0.73 -1.9
55,507 + BACOVA_03358 0.77 -3.4
55,526 + BACOVA_03358 0.79 -0.7
55,538 - BACOVA_03358 0.80 -0.0
55,547 - BACOVA_03358 0.81 -1.8
55,547 - BACOVA_03358 0.81 -0.4
55,576 + BACOVA_03358 0.84 -2.9
55,591 + BACOVA_03358 0.85 -0.2
55,615 + BACOVA_03358 0.88 -1.4
55,615 + BACOVA_03358 0.88 -1.9
55,615 + BACOVA_03358 0.88 -3.0
55,685 - -1.3
55,687 + -1.7
55,687 + -0.7
55,700 - -2.4
55,709 + -0.9
55,729 - -0.4
55,729 - -2.8
55,736 - -2.7
55,765 + -0.9
55,765 + -1.0
55,765 + -3.1
55,766 - +0.3
55,767 + -0.4
55,772 + -2.8
55,806 - -2.5
55,824 + +0.8
55,824 + +0.6
55,838 - -1.2
55,841 + +0.7
55,844 + +0.1
55,863 + -1.1
55,873 + -0.3
55,873 + -0.4
55,874 - -2.4
55,925 - -3.2
55,930 - -2.0
56,003 + -2.9
56,079 + BACOVA_03359 0.12 +0.1
56,080 - BACOVA_03359 0.12 -1.6
56,080 - BACOVA_03359 0.12 -1.2
56,084 - BACOVA_03359 0.13 -3.9
56,157 + BACOVA_03359 0.17 +0.3
56,157 + BACOVA_03359 0.17 -0.8
56,159 + BACOVA_03359 0.17 -1.8
56,160 - BACOVA_03359 0.17 -1.0
56,206 - BACOVA_03359 0.19 -1.0
56,211 + BACOVA_03359 0.20 -0.9
56,313 + BACOVA_03359 0.25 +0.7
56,314 - BACOVA_03359 0.25 -0.3
56,354 + BACOVA_03359 0.27 -2.0
56,360 + BACOVA_03359 0.28 -0.2
56,375 + BACOVA_03359 0.29 -2.1
56,409 - BACOVA_03359 0.30 -0.4
56,416 - BACOVA_03359 0.31 -0.7
56,418 - BACOVA_03359 0.31 -1.3
56,418 - BACOVA_03359 0.31 -0.7
56,418 - BACOVA_03359 0.31 -3.0
56,527 + BACOVA_03359 0.37 -2.0
56,528 - BACOVA_03359 0.37 -0.9
56,528 - BACOVA_03359 0.37 -2.0
56,528 - BACOVA_03359 0.37 -2.7
56,548 + BACOVA_03359 0.38 -1.8
56,577 + BACOVA_03359 0.40 -0.3
56,586 - BACOVA_03359 0.40 -3.2
56,632 + BACOVA_03359 0.43 -3.4
56,633 - BACOVA_03359 0.43 -0.6
56,633 - BACOVA_03359 0.43 -2.4
56,700 + BACOVA_03359 0.46 -0.8
56,700 + BACOVA_03359 0.46 -2.3
56,701 - BACOVA_03359 0.47 -1.7

Or see this region's nucleotide sequence