Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03150

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03147 and BACOVA_03148 overlap by 11 nucleotidesBACOVA_03148 and BACOVA_03149 are separated by 114 nucleotidesBACOVA_03149 and BACOVA_03150 are separated by 54 nucleotidesBACOVA_03150 and BACOVA_03151 are separated by 36 nucleotides BACOVA_03147: BACOVA_03147 - ABC 3 transport family protein, at 236,636 to 237,460 _03147 BACOVA_03148: BACOVA_03148 - hypothetical protein, at 237,450 to 237,893 _03148 BACOVA_03149: BACOVA_03149 - hypothetical protein, at 238,008 to 238,340 _03149 BACOVA_03150: BACOVA_03150 - leucine Rich Repeat protein, at 238,395 to 239,135 _03150 BACOVA_03151: BACOVA_03151 - peptidase, M28 family, at 239,172 to 240,173 _03151 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 237.428 kb on - strandat 237.428 kb on - strandat 237.428 kb on - strandat 237.435 kb on - strandat 237.438 kb on - strandat 237.472 kb on - strandat 237.596 kb on - strand, within BACOVA_03148at 237.635 kb on - strand, within BACOVA_03148at 237.635 kb on - strand, within BACOVA_03148at 237.686 kb on - strand, within BACOVA_03148at 237.691 kb on - strand, within BACOVA_03148at 237.877 kb on - strandat 237.900 kb on - strandat 237.902 kb on - strandat 237.938 kb on - strandat 237.938 kb on - strandat 237.957 kb on + strandat 237.990 kb on + strandat 237.991 kb on - strandat 237.993 kb on + strandat 237.994 kb on - strandat 238.003 kb on - strandat 238.022 kb on + strandat 238.022 kb on + strandat 238.023 kb on - strandat 238.023 kb on - strandat 238.024 kb on + strandat 238.024 kb on + strandat 238.024 kb on + strandat 238.025 kb on - strandat 238.027 kb on + strandat 238.058 kb on - strand, within BACOVA_03149at 238.058 kb on - strand, within BACOVA_03149at 238.085 kb on + strand, within BACOVA_03149at 238.196 kb on - strand, within BACOVA_03149at 238.219 kb on + strand, within BACOVA_03149at 238.219 kb on + strand, within BACOVA_03149at 238.220 kb on - strand, within BACOVA_03149at 238.250 kb on - strand, within BACOVA_03149at 238.282 kb on + strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.285 kb on - strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.299 kb on - strand, within BACOVA_03149at 238.306 kb on + strand, within BACOVA_03149at 238.307 kb on - strandat 238.308 kb on + strandat 238.309 kb on - strandat 238.309 kb on - strandat 238.338 kb on + strandat 238.338 kb on + strandat 238.339 kb on - strandat 238.344 kb on - strandat 238.349 kb on + strandat 238.351 kb on + strandat 238.351 kb on + strandat 238.351 kb on + strandat 238.352 kb on - strandat 238.383 kb on + strandat 238.457 kb on + strandat 238.469 kb on + strand, within BACOVA_03150at 238.469 kb on + strand, within BACOVA_03150at 238.469 kb on + strand, within BACOVA_03150at 238.485 kb on - strand, within BACOVA_03150at 238.547 kb on + strand, within BACOVA_03150at 238.548 kb on - strand, within BACOVA_03150at 238.549 kb on + strand, within BACOVA_03150at 238.582 kb on + strand, within BACOVA_03150at 238.617 kb on + strand, within BACOVA_03150at 238.626 kb on + strand, within BACOVA_03150at 238.627 kb on - strand, within BACOVA_03150at 238.628 kb on + strand, within BACOVA_03150at 238.677 kb on - strand, within BACOVA_03150at 238.691 kb on + strand, within BACOVA_03150at 238.699 kb on + strand, within BACOVA_03150at 238.699 kb on + strand, within BACOVA_03150at 238.699 kb on + strand, within BACOVA_03150at 238.700 kb on - strand, within BACOVA_03150at 238.744 kb on + strand, within BACOVA_03150at 238.744 kb on + strand, within BACOVA_03150at 238.781 kb on + strand, within BACOVA_03150at 238.782 kb on - strand, within BACOVA_03150at 238.783 kb on + strand, within BACOVA_03150at 238.813 kb on + strand, within BACOVA_03150at 238.824 kb on + strand, within BACOVA_03150at 238.825 kb on - strand, within BACOVA_03150at 238.862 kb on + strand, within BACOVA_03150at 238.863 kb on - strand, within BACOVA_03150at 238.865 kb on + strand, within BACOVA_03150at 238.866 kb on - strand, within BACOVA_03150at 238.889 kb on + strand, within BACOVA_03150at 238.890 kb on - strand, within BACOVA_03150at 238.898 kb on - strand, within BACOVA_03150at 238.898 kb on - strand, within BACOVA_03150at 238.898 kb on - strand, within BACOVA_03150at 238.930 kb on + strand, within BACOVA_03150at 238.931 kb on - strand, within BACOVA_03150at 238.941 kb on + strand, within BACOVA_03150at 238.980 kb on - strand, within BACOVA_03150at 238.980 kb on - strand, within BACOVA_03150at 239.060 kb on + strand, within BACOVA_03150at 239.066 kb on + strandat 239.066 kb on + strandat 239.087 kb on + strandat 239.139 kb on - strandat 239.155 kb on + strandat 239.155 kb on + strandat 239.162 kb on + strandat 239.162 kb on + strandat 239.166 kb on + strandat 239.166 kb on + strandat 239.167 kb on - strandat 239.167 kb on - strandat 239.167 kb on - strandat 239.167 kb on - strandat 239.167 kb on - strandat 239.224 kb on + strandat 239.262 kb on - strandat 239.285 kb on + strand, within BACOVA_03151at 239.288 kb on + strand, within BACOVA_03151at 239.361 kb on + strand, within BACOVA_03151at 239.362 kb on - strand, within BACOVA_03151at 239.362 kb on - strand, within BACOVA_03151at 239.363 kb on + strand, within BACOVA_03151at 239.364 kb on - strand, within BACOVA_03151at 239.378 kb on - strand, within BACOVA_03151at 239.392 kb on + strand, within BACOVA_03151at 239.392 kb on + strand, within BACOVA_03151at 239.412 kb on + strand, within BACOVA_03151at 239.433 kb on + strand, within BACOVA_03151at 239.434 kb on - strand, within BACOVA_03151at 239.485 kb on + strand, within BACOVA_03151at 239.490 kb on - strand, within BACOVA_03151at 239.558 kb on + strand, within BACOVA_03151at 239.568 kb on + strand, within BACOVA_03151at 239.568 kb on + strand, within BACOVA_03151at 239.599 kb on + strand, within BACOVA_03151at 239.600 kb on - strand, within BACOVA_03151at 239.632 kb on + strand, within BACOVA_03151at 239.632 kb on + strand, within BACOVA_03151at 239.632 kb on + strand, within BACOVA_03151at 239.633 kb on - strand, within BACOVA_03151at 239.634 kb on + strand, within BACOVA_03151at 239.684 kb on - strand, within BACOVA_03151at 239.775 kb on - strand, within BACOVA_03151at 239.803 kb on + strand, within BACOVA_03151at 239.846 kb on + strand, within BACOVA_03151at 239.886 kb on + strand, within BACOVA_03151at 240.024 kb on - strand, within BACOVA_03151at 240.040 kb on - strand, within BACOVA_03151at 240.044 kb on + strand, within BACOVA_03151at 240.045 kb on - strand, within BACOVA_03151at 240.045 kb on - strand, within BACOVA_03151at 240.113 kb on - strandat 240.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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237,428 - +0.2
237,428 - -0.1
237,428 - +0.5
237,435 - -1.1
237,438 - -0.9
237,472 - -2.5
237,596 - BACOVA_03148 0.33 -0.4
237,635 - BACOVA_03148 0.42 -0.5
237,635 - BACOVA_03148 0.42 -1.5
237,686 - BACOVA_03148 0.53 -1.8
237,691 - BACOVA_03148 0.54 -2.1
237,877 - -0.9
237,900 - -0.7
237,902 - +0.0
237,938 - +0.3
237,938 - -0.1
237,957 + -0.6
237,990 + -2.9
237,991 - +1.7
237,993 + -1.8
237,994 - +0.2
238,003 - -0.9
238,022 + -0.7
238,022 + -3.4
238,023 - +0.8
238,023 - +0.8
238,024 + +0.5
238,024 + +0.7
238,024 + -1.2
238,025 - -1.7
238,027 + -0.3
238,058 - BACOVA_03149 0.15 -1.7
238,058 - BACOVA_03149 0.15 +0.4
238,085 + BACOVA_03149 0.23 -1.7
238,196 - BACOVA_03149 0.56 +0.2
238,219 + BACOVA_03149 0.63 -1.4
238,219 + BACOVA_03149 0.63 +1.1
238,220 - BACOVA_03149 0.64 +0.6
238,250 - BACOVA_03149 0.73 -0.7
238,282 + BACOVA_03149 0.82 -0.5
238,283 - BACOVA_03149 0.83 -0.5
238,283 - BACOVA_03149 0.83 +0.7
238,283 - BACOVA_03149 0.83 -0.9
238,285 - BACOVA_03149 0.83 +0.7
238,286 + BACOVA_03149 0.83 -0.2
238,286 + BACOVA_03149 0.83 +0.1
238,286 + BACOVA_03149 0.83 -1.2
238,286 + BACOVA_03149 0.83 +0.3
238,286 + BACOVA_03149 0.83 +0.6
238,287 - BACOVA_03149 0.84 -0.2
238,287 - BACOVA_03149 0.84 -0.3
238,287 - BACOVA_03149 0.84 -0.6
238,287 - BACOVA_03149 0.84 -1.4
238,287 - BACOVA_03149 0.84 -0.7
238,287 - BACOVA_03149 0.84 -1.5
238,287 - BACOVA_03149 0.84 +0.0
238,299 - BACOVA_03149 0.87 -3.0
238,306 + BACOVA_03149 0.89 -0.2
238,307 - -0.7
238,308 + +0.5
238,309 - +1.4
238,309 - +1.0
238,338 + +0.3
238,338 + +0.8
238,339 - -0.0
238,344 - +0.5
238,349 + -0.3
238,351 + -0.0
238,351 + -0.1
238,351 + -0.5
238,352 - +0.1
238,383 + -0.1
238,457 + -0.4
238,469 + BACOVA_03150 0.10 +1.4
238,469 + BACOVA_03150 0.10 +0.5
238,469 + BACOVA_03150 0.10 -0.5
238,485 - BACOVA_03150 0.12 -0.3
238,547 + BACOVA_03150 0.21 +1.0
238,548 - BACOVA_03150 0.21 -0.5
238,549 + BACOVA_03150 0.21 +1.3
238,582 + BACOVA_03150 0.25 -0.4
238,617 + BACOVA_03150 0.30 +0.4
238,626 + BACOVA_03150 0.31 -0.6
238,627 - BACOVA_03150 0.31 -0.1
238,628 + BACOVA_03150 0.31 +0.5
238,677 - BACOVA_03150 0.38 -0.2
238,691 + BACOVA_03150 0.40 -1.3
238,699 + BACOVA_03150 0.41 +0.5
238,699 + BACOVA_03150 0.41 -0.8
238,699 + BACOVA_03150 0.41 +0.2
238,700 - BACOVA_03150 0.41 -1.1
238,744 + BACOVA_03150 0.47 -0.4
238,744 + BACOVA_03150 0.47 -0.2
238,781 + BACOVA_03150 0.52 -0.6
238,782 - BACOVA_03150 0.52 -0.2
238,783 + BACOVA_03150 0.52 -0.5
238,813 + BACOVA_03150 0.56 +1.1
238,824 + BACOVA_03150 0.58 -1.3
238,825 - BACOVA_03150 0.58 +0.6
238,862 + BACOVA_03150 0.63 +0.3
238,863 - BACOVA_03150 0.63 -0.7
238,865 + BACOVA_03150 0.63 -0.9
238,866 - BACOVA_03150 0.64 +0.8
238,889 + BACOVA_03150 0.67 +0.3
238,890 - BACOVA_03150 0.67 -0.5
238,898 - BACOVA_03150 0.68 -0.7
238,898 - BACOVA_03150 0.68 +2.5
238,898 - BACOVA_03150 0.68 +0.2
238,930 + BACOVA_03150 0.72 +0.3
238,931 - BACOVA_03150 0.72 -0.1
238,941 + BACOVA_03150 0.74 +0.4
238,980 - BACOVA_03150 0.79 -0.2
238,980 - BACOVA_03150 0.79 +1.0
239,060 + BACOVA_03150 0.90 -0.0
239,066 + -0.1
239,066 + -0.6
239,087 + -0.3
239,139 - -0.6
239,155 + +0.0
239,155 + +1.4
239,162 + -1.6
239,162 + -1.1
239,166 + -0.7
239,166 + +0.1
239,167 - -0.9
239,167 - +2.8
239,167 - -0.4
239,167 - -1.0
239,167 - -1.4
239,224 + +0.5
239,262 - +0.5
239,285 + BACOVA_03151 0.11 -0.0
239,288 + BACOVA_03151 0.12 +1.3
239,361 + BACOVA_03151 0.19 +0.4
239,362 - BACOVA_03151 0.19 -2.8
239,362 - BACOVA_03151 0.19 +1.2
239,363 + BACOVA_03151 0.19 -0.8
239,364 - BACOVA_03151 0.19 -0.7
239,378 - BACOVA_03151 0.21 +1.4
239,392 + BACOVA_03151 0.22 -0.0
239,392 + BACOVA_03151 0.22 -1.4
239,412 + BACOVA_03151 0.24 +0.5
239,433 + BACOVA_03151 0.26 +1.2
239,434 - BACOVA_03151 0.26 -0.4
239,485 + BACOVA_03151 0.31 +1.5
239,490 - BACOVA_03151 0.32 -0.8
239,558 + BACOVA_03151 0.39 +0.6
239,568 + BACOVA_03151 0.40 -1.2
239,568 + BACOVA_03151 0.40 -1.1
239,599 + BACOVA_03151 0.43 -0.3
239,600 - BACOVA_03151 0.43 +1.5
239,632 + BACOVA_03151 0.46 -0.4
239,632 + BACOVA_03151 0.46 -1.1
239,632 + BACOVA_03151 0.46 +0.0
239,633 - BACOVA_03151 0.46 +0.0
239,634 + BACOVA_03151 0.46 -0.6
239,684 - BACOVA_03151 0.51 +0.5
239,775 - BACOVA_03151 0.60 +0.8
239,803 + BACOVA_03151 0.63 +0.6
239,846 + BACOVA_03151 0.67 +0.1
239,886 + BACOVA_03151 0.71 +0.2
240,024 - BACOVA_03151 0.85 +0.7
240,040 - BACOVA_03151 0.87 -2.8
240,044 + BACOVA_03151 0.87 +0.2
240,045 - BACOVA_03151 0.87 +1.0
240,045 - BACOVA_03151 0.87 +1.8
240,113 - -0.7
240,122 + +0.2

Or see this region's nucleotide sequence