Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02901

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02899 and BACOVA_02900 are separated by 90 nucleotidesBACOVA_02900 and BACOVA_02901 are separated by 138 nucleotidesBACOVA_02901 and BACOVA_02902 are separated by 117 nucleotides BACOVA_02899: BACOVA_02899 - putative DNA-binding protein, at 402,044 to 402,562 _02899 BACOVA_02900: BACOVA_02900 - N-acetylmuramoyl-L-alanine amidase, at 402,653 to 403,120 _02900 BACOVA_02901: BACOVA_02901 - hypothetical protein, at 403,259 to 403,360 _02901 BACOVA_02902: BACOVA_02902 - hypothetical protein, at 403,478 to 405,442 _02902 Position (kb) 403 404Strain fitness (log2 ratio) -2 -1 0 1 2at 402.307 kb on + strand, within BACOVA_02899at 402.333 kb on + strand, within BACOVA_02899at 402.334 kb on - strand, within BACOVA_02899at 402.398 kb on - strand, within BACOVA_02899at 402.481 kb on + strand, within BACOVA_02899at 402.481 kb on + strand, within BACOVA_02899at 402.488 kb on - strand, within BACOVA_02899at 402.488 kb on - strand, within BACOVA_02899at 402.561 kb on - strandat 402.625 kb on - strandat 402.633 kb on - strandat 402.633 kb on - strandat 402.639 kb on - strandat 402.670 kb on - strandat 402.707 kb on - strand, within BACOVA_02900at 402.774 kb on - strand, within BACOVA_02900at 402.862 kb on - strand, within BACOVA_02900at 402.873 kb on - strand, within BACOVA_02900at 403.134 kb on + strandat 403.144 kb on + strandat 403.176 kb on - strandat 403.179 kb on + strandat 403.179 kb on + strandat 403.179 kb on + strandat 403.181 kb on + strandat 403.182 kb on - strandat 403.285 kb on + strand, within BACOVA_02901at 403.285 kb on + strand, within BACOVA_02901at 403.285 kb on + strand, within BACOVA_02901at 403.286 kb on - strand, within BACOVA_02901at 403.304 kb on - strand, within BACOVA_02901at 403.342 kb on + strand, within BACOVA_02901at 403.370 kb on - strandat 403.373 kb on + strandat 403.410 kb on - strandat 403.429 kb on + strandat 403.448 kb on + strandat 403.451 kb on + strandat 403.452 kb on - strandat 403.483 kb on + strandat 403.487 kb on + strandat 403.492 kb on + strandat 403.493 kb on - strandat 403.528 kb on + strandat 403.579 kb on + strandat 403.619 kb on - strandat 403.648 kb on + strandat 403.670 kb on - strandat 403.685 kb on - strand, within BACOVA_02902at 403.696 kb on + strand, within BACOVA_02902at 403.707 kb on + strand, within BACOVA_02902at 403.708 kb on - strand, within BACOVA_02902at 403.708 kb on - strand, within BACOVA_02902at 403.710 kb on - strand, within BACOVA_02902at 403.714 kb on + strand, within BACOVA_02902at 403.715 kb on - strand, within BACOVA_02902at 403.715 kb on - strand, within BACOVA_02902at 403.718 kb on - strand, within BACOVA_02902at 403.718 kb on - strand, within BACOVA_02902at 403.726 kb on - strand, within BACOVA_02902at 403.726 kb on - strand, within BACOVA_02902at 403.731 kb on - strand, within BACOVA_02902at 403.754 kb on + strand, within BACOVA_02902at 403.754 kb on + strand, within BACOVA_02902at 403.755 kb on - strand, within BACOVA_02902at 403.755 kb on - strand, within BACOVA_02902at 403.761 kb on + strand, within BACOVA_02902at 403.762 kb on - strand, within BACOVA_02902at 403.777 kb on + strand, within BACOVA_02902at 403.782 kb on + strand, within BACOVA_02902at 403.783 kb on - strand, within BACOVA_02902at 403.797 kb on - strand, within BACOVA_02902at 403.832 kb on + strand, within BACOVA_02902at 403.832 kb on + strand, within BACOVA_02902at 403.834 kb on + strand, within BACOVA_02902at 403.834 kb on + strand, within BACOVA_02902at 403.835 kb on - strand, within BACOVA_02902at 403.850 kb on - strand, within BACOVA_02902at 403.866 kb on + strand, within BACOVA_02902at 403.893 kb on - strand, within BACOVA_02902at 403.893 kb on - strand, within BACOVA_02902at 403.954 kb on + strand, within BACOVA_02902at 404.042 kb on - strand, within BACOVA_02902at 404.115 kb on - strand, within BACOVA_02902at 404.117 kb on + strand, within BACOVA_02902at 404.117 kb on + strand, within BACOVA_02902at 404.117 kb on + strand, within BACOVA_02902at 404.118 kb on - strand, within BACOVA_02902at 404.172 kb on + strand, within BACOVA_02902at 404.284 kb on - strand, within BACOVA_02902at 404.286 kb on - strand, within BACOVA_02902at 404.286 kb on - strand, within BACOVA_02902at 404.345 kb on + strand, within BACOVA_02902at 404.346 kb on - strand, within BACOVA_02902at 404.346 kb on - strand, within BACOVA_02902at 404.346 kb on - strand, within BACOVA_02902at 404.347 kb on + strand, within BACOVA_02902at 404.347 kb on + strand, within BACOVA_02902at 404.351 kb on + strand, within BACOVA_02902at 404.351 kb on + strand, within BACOVA_02902

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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402,307 + BACOVA_02899 0.51 -0.5
402,333 + BACOVA_02899 0.56 -2.7
402,334 - BACOVA_02899 0.56 -1.0
402,398 - BACOVA_02899 0.68 -0.0
402,481 + BACOVA_02899 0.84 -1.0
402,481 + BACOVA_02899 0.84 -1.4
402,488 - BACOVA_02899 0.86 +0.7
402,488 - BACOVA_02899 0.86 -0.1
402,561 - +0.7
402,625 - +0.8
402,633 - +1.2
402,633 - -1.2
402,639 - -0.1
402,670 - +0.8
402,707 - BACOVA_02900 0.12 +0.1
402,774 - BACOVA_02900 0.26 +0.7
402,862 - BACOVA_02900 0.45 -1.2
402,873 - BACOVA_02900 0.47 +2.1
403,134 + -0.5
403,144 + -0.5
403,176 - +0.4
403,179 + +0.1
403,179 + -0.5
403,179 + -0.4
403,181 + -0.1
403,182 - +0.7
403,285 + BACOVA_02901 0.25 -1.4
403,285 + BACOVA_02901 0.25 +0.5
403,285 + BACOVA_02901 0.25 -0.8
403,286 - BACOVA_02901 0.26 +0.6
403,304 - BACOVA_02901 0.44 -1.7
403,342 + BACOVA_02901 0.81 -1.0
403,370 - -1.8
403,373 + +0.1
403,410 - -0.7
403,429 + +0.2
403,448 + +0.2
403,451 + -0.0
403,452 - -0.2
403,483 + -0.2
403,487 + +0.7
403,492 + +0.8
403,493 - +0.4
403,528 + +0.5
403,579 + +0.3
403,619 - -0.2
403,648 + +1.9
403,670 - +0.5
403,685 - BACOVA_02902 0.11 -0.8
403,696 + BACOVA_02902 0.11 -1.1
403,707 + BACOVA_02902 0.12 -0.0
403,708 - BACOVA_02902 0.12 -0.1
403,708 - BACOVA_02902 0.12 -0.2
403,710 - BACOVA_02902 0.12 +0.1
403,714 + BACOVA_02902 0.12 +0.4
403,715 - BACOVA_02902 0.12 +1.8
403,715 - BACOVA_02902 0.12 -1.7
403,718 - BACOVA_02902 0.12 +0.4
403,718 - BACOVA_02902 0.12 +1.4
403,726 - BACOVA_02902 0.13 -0.2
403,726 - BACOVA_02902 0.13 -0.2
403,731 - BACOVA_02902 0.13 -1.2
403,754 + BACOVA_02902 0.14 -2.2
403,754 + BACOVA_02902 0.14 +1.1
403,755 - BACOVA_02902 0.14 +0.5
403,755 - BACOVA_02902 0.14 -0.2
403,761 + BACOVA_02902 0.14 -1.5
403,762 - BACOVA_02902 0.14 +0.5
403,777 + BACOVA_02902 0.15 -1.2
403,782 + BACOVA_02902 0.15 +0.1
403,783 - BACOVA_02902 0.16 -0.3
403,797 - BACOVA_02902 0.16 +0.2
403,832 + BACOVA_02902 0.18 +1.3
403,832 + BACOVA_02902 0.18 -0.1
403,834 + BACOVA_02902 0.18 -0.8
403,834 + BACOVA_02902 0.18 -0.6
403,835 - BACOVA_02902 0.18 +1.1
403,850 - BACOVA_02902 0.19 -1.4
403,866 + BACOVA_02902 0.20 +0.4
403,893 - BACOVA_02902 0.21 -0.3
403,893 - BACOVA_02902 0.21 -0.1
403,954 + BACOVA_02902 0.24 -0.2
404,042 - BACOVA_02902 0.29 -0.3
404,115 - BACOVA_02902 0.32 +0.9
404,117 + BACOVA_02902 0.33 +0.3
404,117 + BACOVA_02902 0.33 -1.0
404,117 + BACOVA_02902 0.33 +0.3
404,118 - BACOVA_02902 0.33 -0.7
404,172 + BACOVA_02902 0.35 +0.9
404,284 - BACOVA_02902 0.41 -0.6
404,286 - BACOVA_02902 0.41 +0.8
404,286 - BACOVA_02902 0.41 -0.7
404,345 + BACOVA_02902 0.44 +1.7
404,346 - BACOVA_02902 0.44 +1.1
404,346 - BACOVA_02902 0.44 -1.0
404,346 - BACOVA_02902 0.44 -1.0
404,347 + BACOVA_02902 0.44 -0.8
404,347 + BACOVA_02902 0.44 +1.1
404,351 + BACOVA_02902 0.44 -0.5
404,351 + BACOVA_02902 0.44 +0.1

Or see this region's nucleotide sequence