Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02798 and BACOVA_02799 are separated by 201 nucleotides BACOVA_02799 and BACOVA_02800 are separated by 208 nucleotides
BACOVA_02798: BACOVA_02798 - arylsulfatase, at 253,702 to 255,255
_02798
BACOVA_02799: BACOVA_02799 - hypothetical protein, at 255,457 to 257,511
_02799
BACOVA_02800: BACOVA_02800 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 257,720 to 261,730
_02800
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 254.525 kb on + strand, within BACOVA_02798 at 254.603 kb on + strand, within BACOVA_02798 at 254.604 kb on - strand, within BACOVA_02798 at 254.604 kb on - strand, within BACOVA_02798 at 254.841 kb on - strand, within BACOVA_02798 at 254.907 kb on + strand, within BACOVA_02798 at 254.927 kb on - strand, within BACOVA_02798 at 254.964 kb on + strand, within BACOVA_02798 at 254.980 kb on + strand, within BACOVA_02798 at 255.053 kb on + strand, within BACOVA_02798 at 255.054 kb on - strand, within BACOVA_02798 at 255.070 kb on + strand, within BACOVA_02798 at 255.070 kb on + strand, within BACOVA_02798 at 255.070 kb on + strand, within BACOVA_02798 at 255.071 kb on - strand, within BACOVA_02798 at 255.162 kb on + strand at 255.163 kb on - strand at 255.165 kb on + strand at 255.175 kb on - strand at 255.220 kb on + strand at 255.221 kb on - strand at 255.283 kb on + strand at 255.338 kb on - strand at 255.374 kb on + strand at 255.375 kb on - strand at 255.384 kb on + strand at 255.385 kb on - strand at 255.385 kb on - strand at 255.469 kb on + strand at 255.469 kb on + strand at 255.469 kb on + strand at 255.470 kb on - strand at 255.527 kb on + strand at 255.600 kb on + strand at 255.600 kb on + strand at 255.601 kb on - strand at 255.601 kb on - strand at 255.643 kb on + strand at 255.644 kb on - strand at 255.670 kb on + strand, within BACOVA_02799 at 255.685 kb on - strand, within BACOVA_02799 at 255.686 kb on + strand, within BACOVA_02799 at 255.687 kb on - strand, within BACOVA_02799 at 255.703 kb on - strand, within BACOVA_02799 at 255.707 kb on + strand, within BACOVA_02799 at 255.743 kb on - strand, within BACOVA_02799 at 255.807 kb on - strand, within BACOVA_02799 at 255.824 kb on - strand, within BACOVA_02799 at 255.829 kb on - strand, within BACOVA_02799 at 255.835 kb on + strand, within BACOVA_02799 at 255.844 kb on - strand, within BACOVA_02799 at 255.975 kb on + strand, within BACOVA_02799 at 255.976 kb on - strand, within BACOVA_02799 at 256.037 kb on + strand, within BACOVA_02799 at 256.038 kb on - strand, within BACOVA_02799 at 256.085 kb on + strand, within BACOVA_02799 at 256.085 kb on + strand, within BACOVA_02799 at 256.233 kb on - strand, within BACOVA_02799 at 256.292 kb on + strand, within BACOVA_02799 at 256.297 kb on + strand, within BACOVA_02799 at 256.371 kb on - strand, within BACOVA_02799 at 256.401 kb on - strand, within BACOVA_02799 at 256.401 kb on - strand, within BACOVA_02799 at 256.401 kb on - strand, within BACOVA_02799 at 256.479 kb on + strand, within BACOVA_02799 at 256.490 kb on + strand, within BACOVA_02799 at 256.490 kb on + strand, within BACOVA_02799 at 256.491 kb on - strand, within BACOVA_02799 at 256.491 kb on - strand, within BACOVA_02799 at 256.560 kb on - strand, within BACOVA_02799 at 256.563 kb on - strand, within BACOVA_02799 at 256.563 kb on - strand, within BACOVA_02799 at 256.628 kb on + strand, within BACOVA_02799 at 256.629 kb on - strand, within BACOVA_02799 at 256.629 kb on - strand, within BACOVA_02799 at 256.780 kb on + strand, within BACOVA_02799 at 256.781 kb on - strand, within BACOVA_02799 at 256.781 kb on - strand, within BACOVA_02799 at 256.811 kb on - strand, within BACOVA_02799 at 256.811 kb on - strand, within BACOVA_02799 at 256.940 kb on - strand, within BACOVA_02799 at 256.946 kb on - strand, within BACOVA_02799 at 256.999 kb on - strand, within BACOVA_02799 at 256.999 kb on - strand, within BACOVA_02799 at 256.999 kb on - strand, within BACOVA_02799 at 257.024 kb on + strand, within BACOVA_02799 at 257.024 kb on + strand, within BACOVA_02799 at 257.093 kb on + strand, within BACOVA_02799 at 257.094 kb on - strand, within BACOVA_02799 at 257.137 kb on - strand, within BACOVA_02799 at 257.137 kb on - strand, within BACOVA_02799 at 257.140 kb on + strand, within BACOVA_02799 at 257.140 kb on + strand, within BACOVA_02799 at 257.148 kb on + strand, within BACOVA_02799 at 257.148 kb on + strand, within BACOVA_02799 at 257.148 kb on + strand, within BACOVA_02799 at 257.149 kb on - strand, within BACOVA_02799 at 257.151 kb on - strand, within BACOVA_02799 at 257.151 kb on - strand, within BACOVA_02799 at 257.151 kb on - strand, within BACOVA_02799 at 257.151 kb on - strand, within BACOVA_02799 at 257.162 kb on + strand, within BACOVA_02799 at 257.163 kb on - strand, within BACOVA_02799 at 257.163 kb on - strand, within BACOVA_02799 at 257.163 kb on - strand, within BACOVA_02799 at 257.295 kb on + strand, within BACOVA_02799 at 257.300 kb on - strand, within BACOVA_02799 at 257.300 kb on - strand, within BACOVA_02799 at 257.300 kb on - strand, within BACOVA_02799 at 257.394 kb on + strand at 257.394 kb on + strand at 257.403 kb on - strand at 257.437 kb on - strand at 257.445 kb on - strand at 257.484 kb on + strand at 257.484 kb on + strand at 257.485 kb on - strand at 257.485 kb on - strand at 257.511 kb on + strand at 257.583 kb on + strand at 257.584 kb on + strand at 257.584 kb on - strand at 257.587 kb on - strand at 257.659 kb on + strand at 257.659 kb on + strand at 257.659 kb on + strand at 257.660 kb on - strand at 257.733 kb on + strand at 257.733 kb on + strand at 257.734 kb on - strand at 257.738 kb on - strand at 257.751 kb on + strand at 257.751 kb on + strand at 257.782 kb on - strand at 257.801 kb on + strand at 257.803 kb on + strand at 257.806 kb on + strand at 257.809 kb on + strand at 257.810 kb on - strand at 257.826 kb on + strand at 257.826 kb on + strand at 257.826 kb on + strand at 257.826 kb on + strand at 257.826 kb on + strand at 257.831 kb on - strand at 257.831 kb on - strand at 257.831 kb on - strand at 257.833 kb on - strand at 257.855 kb on - strand at 257.934 kb on - strand at 257.956 kb on + strand at 257.957 kb on - strand at 258.005 kb on + strand at 258.007 kb on + strand at 258.007 kb on + strand at 258.030 kb on + strand at 258.031 kb on - strand at 258.031 kb on - strand at 258.062 kb on + strand at 258.062 kb on + strand at 258.064 kb on + strand at 258.064 kb on + strand at 258.064 kb on + strand at 258.069 kb on - strand at 258.166 kb on + strand, within BACOVA_02800 at 258.167 kb on - strand, within BACOVA_02800 at 258.167 kb on - strand, within BACOVA_02800 at 258.187 kb on - strand, within BACOVA_02800 at 258.248 kb on + strand, within BACOVA_02800 at 258.249 kb on - strand, within BACOVA_02800 at 258.276 kb on + strand, within BACOVA_02800 at 258.362 kb on - strand, within BACOVA_02800 at 258.409 kb on - strand, within BACOVA_02800 at 258.437 kb on + strand, within BACOVA_02800 at 258.443 kb on - strand, within BACOVA_02800 at 258.444 kb on + strand, within BACOVA_02800 at 258.464 kb on - strand, within BACOVA_02800 at 258.464 kb on - strand, within BACOVA_02800 at 258.464 kb on - strand, within BACOVA_02800
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 254,525 + BACOVA_02798 0.53 +0.0 254,603 + BACOVA_02798 0.58 -0.7 254,604 - BACOVA_02798 0.58 -0.1 254,604 - BACOVA_02798 0.58 -0.0 254,841 - BACOVA_02798 0.73 -1.4 254,907 + BACOVA_02798 0.78 -0.4 254,927 - BACOVA_02798 0.79 -0.4 254,964 + BACOVA_02798 0.81 -0.5 254,980 + BACOVA_02798 0.82 -1.9 255,053 + BACOVA_02798 0.87 +1.5 255,054 - BACOVA_02798 0.87 +0.3 255,070 + BACOVA_02798 0.88 -1.1 255,070 + BACOVA_02798 0.88 -1.0 255,070 + BACOVA_02798 0.88 -0.8 255,071 - BACOVA_02798 0.88 -0.4 255,162 + +0.1 255,163 - -1.2 255,165 + +1.9 255,175 - +0.7 255,220 + -1.4 255,221 - -0.1 255,283 + -1.3 255,338 - -0.9 255,374 + -1.1 255,375 - +0.2 255,384 + +0.4 255,385 - -0.6 255,385 - +1.5 255,469 + -0.0 255,469 + -0.2 255,469 + +1.8 255,470 - -2.0 255,527 + +0.3 255,600 + -0.4 255,600 + +1.1 255,601 - +1.1 255,601 - -0.5 255,643 + -0.8 255,644 - +0.1 255,670 + BACOVA_02799 0.10 +0.5 255,685 - BACOVA_02799 0.11 -0.7 255,686 + BACOVA_02799 0.11 +0.3 255,687 - BACOVA_02799 0.11 +0.2 255,703 - BACOVA_02799 0.12 -0.1 255,707 + BACOVA_02799 0.12 -0.2 255,743 - BACOVA_02799 0.14 -0.3 255,807 - BACOVA_02799 0.17 -0.5 255,824 - BACOVA_02799 0.18 -0.3 255,829 - BACOVA_02799 0.18 -0.0 255,835 + BACOVA_02799 0.18 -0.2 255,844 - BACOVA_02799 0.19 -0.2 255,975 + BACOVA_02799 0.25 -0.1 255,976 - BACOVA_02799 0.25 -1.1 256,037 + BACOVA_02799 0.28 -0.6 256,038 - BACOVA_02799 0.28 +0.2 256,085 + BACOVA_02799 0.31 +1.3 256,085 + BACOVA_02799 0.31 +1.3 256,233 - BACOVA_02799 0.38 -2.0 256,292 + BACOVA_02799 0.41 -0.6 256,297 + BACOVA_02799 0.41 -0.2 256,371 - BACOVA_02799 0.44 -2.2 256,401 - BACOVA_02799 0.46 +0.3 256,401 - BACOVA_02799 0.46 -1.7 256,401 - BACOVA_02799 0.46 -0.5 256,479 + BACOVA_02799 0.50 -0.1 256,490 + BACOVA_02799 0.50 -0.7 256,490 + BACOVA_02799 0.50 +0.5 256,491 - BACOVA_02799 0.50 -0.8 256,491 - BACOVA_02799 0.50 -0.0 256,560 - BACOVA_02799 0.54 +0.0 256,563 - BACOVA_02799 0.54 +0.7 256,563 - BACOVA_02799 0.54 +1.2 256,628 + BACOVA_02799 0.57 +0.1 256,629 - BACOVA_02799 0.57 -0.3 256,629 - BACOVA_02799 0.57 -0.5 256,780 + BACOVA_02799 0.64 +0.1 256,781 - BACOVA_02799 0.64 +0.1 256,781 - BACOVA_02799 0.64 +1.4 256,811 - BACOVA_02799 0.66 -0.1 256,811 - BACOVA_02799 0.66 +2.1 256,940 - BACOVA_02799 0.72 -0.5 256,946 - BACOVA_02799 0.72 +1.0 256,999 - BACOVA_02799 0.75 +0.1 256,999 - BACOVA_02799 0.75 +0.6 256,999 - BACOVA_02799 0.75 +0.3 257,024 + BACOVA_02799 0.76 +1.4 257,024 + BACOVA_02799 0.76 +1.2 257,093 + BACOVA_02799 0.80 +1.9 257,094 - BACOVA_02799 0.80 +0.1 257,137 - BACOVA_02799 0.82 +0.5 257,137 - BACOVA_02799 0.82 -2.4 257,140 + BACOVA_02799 0.82 -1.0 257,140 + BACOVA_02799 0.82 -0.7 257,148 + BACOVA_02799 0.82 +0.1 257,148 + BACOVA_02799 0.82 -0.9 257,148 + BACOVA_02799 0.82 -1.2 257,149 - BACOVA_02799 0.82 +1.1 257,151 - BACOVA_02799 0.82 +0.2 257,151 - BACOVA_02799 0.82 -0.2 257,151 - BACOVA_02799 0.82 +0.8 257,151 - BACOVA_02799 0.82 -0.4 257,162 + BACOVA_02799 0.83 -0.1 257,163 - BACOVA_02799 0.83 -0.2 257,163 - BACOVA_02799 0.83 +1.2 257,163 - BACOVA_02799 0.83 +1.1 257,295 + BACOVA_02799 0.89 +0.7 257,300 - BACOVA_02799 0.90 -0.9 257,300 - BACOVA_02799 0.90 -0.7 257,300 - BACOVA_02799 0.90 +1.0 257,394 + -1.9 257,394 + -0.6 257,403 - +0.5 257,437 - -0.1 257,445 - -0.4 257,484 + +0.0 257,484 + +1.2 257,485 - -0.1 257,485 - -0.8 257,511 + -1.9 257,583 + +1.2 257,584 + +0.7 257,584 - +1.3 257,587 - +0.2 257,659 + -0.0 257,659 + +0.6 257,659 + -1.2 257,660 - +0.4 257,733 + -0.2 257,733 + +1.6 257,734 - +1.0 257,738 - -0.7 257,751 + -0.5 257,751 + +0.4 257,782 - +1.0 257,801 + -0.5 257,803 + -0.1 257,806 + -0.7 257,809 + -1.2 257,810 - -0.4 257,826 + +1.6 257,826 + -0.5 257,826 + -0.5 257,826 + -2.6 257,826 + -1.1 257,831 - +0.3 257,831 - -1.6 257,831 - -0.2 257,833 - -0.4 257,855 - -0.3 257,934 - +1.3 257,956 + +0.3 257,957 - +0.2 258,005 + -0.2 258,007 + +0.1 258,007 + +0.1 258,030 + +0.9 258,031 - +1.1 258,031 - +1.1 258,062 + -0.2 258,062 + -0.5 258,064 + +0.8 258,064 + +0.2 258,064 + +0.5 258,069 - -0.9 258,166 + BACOVA_02800 0.11 -1.4 258,167 - BACOVA_02800 0.11 -0.9 258,167 - BACOVA_02800 0.11 +0.7 258,187 - BACOVA_02800 0.12 -1.4 258,248 + BACOVA_02800 0.13 +0.2 258,249 - BACOVA_02800 0.13 -1.2 258,276 + BACOVA_02800 0.14 -0.2 258,362 - BACOVA_02800 0.16 +0.2 258,409 - BACOVA_02800 0.17 -0.7 258,437 + BACOVA_02800 0.18 +1.1 258,443 - BACOVA_02800 0.18 -0.4 258,444 + BACOVA_02800 0.18 +2.1 258,464 - BACOVA_02800 0.19 -0.1 258,464 - BACOVA_02800 0.19 -2.2 258,464 - BACOVA_02800 0.19 -1.4
Or see this region's nucleotide sequence