Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02001

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02000 and BACOVA_02001 are separated by 144 nucleotidesBACOVA_02001 and BACOVA_02002 are separated by 45 nucleotides BACOVA_02000: BACOVA_02000 - hypothetical protein, at 239,100 to 240,200 _02000 BACOVA_02001: BACOVA_02001 - dihydrouridine synthase (Dus), at 240,345 to 241,289 _02001 BACOVA_02002: BACOVA_02002 - hypothetical protein, at 241,335 to 242,579 _02002 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.398 kb on + strand, within BACOVA_02000at 239.399 kb on - strand, within BACOVA_02000at 239.401 kb on + strand, within BACOVA_02000at 239.401 kb on + strand, within BACOVA_02000at 239.402 kb on - strand, within BACOVA_02000at 239.402 kb on - strand, within BACOVA_02000at 239.403 kb on + strand, within BACOVA_02000at 239.404 kb on - strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.410 kb on - strand, within BACOVA_02000at 239.414 kb on + strand, within BACOVA_02000at 239.438 kb on + strand, within BACOVA_02000at 239.439 kb on - strand, within BACOVA_02000at 239.439 kb on - strand, within BACOVA_02000at 239.446 kb on + strand, within BACOVA_02000at 239.447 kb on - strand, within BACOVA_02000at 239.449 kb on + strand, within BACOVA_02000at 239.449 kb on + strand, within BACOVA_02000at 239.514 kb on - strand, within BACOVA_02000at 239.570 kb on + strand, within BACOVA_02000at 239.593 kb on + strand, within BACOVA_02000at 239.596 kb on + strand, within BACOVA_02000at 239.601 kb on + strand, within BACOVA_02000at 239.649 kb on - strand, within BACOVA_02000at 239.651 kb on + strand, within BACOVA_02000at 239.669 kb on - strand, within BACOVA_02000at 239.671 kb on + strand, within BACOVA_02000at 239.672 kb on - strand, within BACOVA_02000at 239.675 kb on + strand, within BACOVA_02000at 239.675 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.679 kb on - strand, within BACOVA_02000at 239.729 kb on + strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.770 kb on - strand, within BACOVA_02000at 239.777 kb on - strand, within BACOVA_02000at 239.816 kb on + strand, within BACOVA_02000at 239.834 kb on + strand, within BACOVA_02000at 239.872 kb on - strand, within BACOVA_02000at 239.879 kb on + strand, within BACOVA_02000at 239.879 kb on + strand, within BACOVA_02000at 239.889 kb on + strand, within BACOVA_02000at 239.889 kb on + strand, within BACOVA_02000at 239.900 kb on - strand, within BACOVA_02000at 239.906 kb on + strand, within BACOVA_02000at 239.974 kb on - strand, within BACOVA_02000at 239.975 kb on + strand, within BACOVA_02000at 239.976 kb on - strand, within BACOVA_02000at 239.987 kb on + strand, within BACOVA_02000at 239.987 kb on + strand, within BACOVA_02000at 239.996 kb on + strand, within BACOVA_02000at 240.046 kb on + strand, within BACOVA_02000at 240.046 kb on + strand, within BACOVA_02000at 240.047 kb on - strand, within BACOVA_02000at 240.059 kb on + strand, within BACOVA_02000at 240.079 kb on + strand, within BACOVA_02000at 240.080 kb on - strand, within BACOVA_02000at 240.089 kb on + strand, within BACOVA_02000at 240.089 kb on + strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.107 kb on + strandat 240.112 kb on - strandat 240.112 kb on - strandat 240.112 kb on - strandat 240.113 kb on + strandat 240.114 kb on - strandat 240.144 kb on + strandat 240.166 kb on + strandat 240.169 kb on + strandat 240.182 kb on + strandat 240.193 kb on + strandat 240.204 kb on + strandat 240.271 kb on + strandat 240.341 kb on + strandat 240.344 kb on - strandat 240.363 kb on - strandat 240.379 kb on + strandat 240.379 kb on + strandat 240.388 kb on - strandat 240.435 kb on - strandat 240.436 kb on + strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.440 kb on + strand, within BACOVA_02001at 240.444 kb on + strand, within BACOVA_02001at 240.444 kb on + strand, within BACOVA_02001at 240.445 kb on - strand, within BACOVA_02001at 240.445 kb on - strand, within BACOVA_02001at 240.449 kb on + strand, within BACOVA_02001at 240.450 kb on - strand, within BACOVA_02001at 240.583 kb on + strand, within BACOVA_02001at 240.584 kb on - strand, within BACOVA_02001at 240.606 kb on + strand, within BACOVA_02001at 240.608 kb on + strand, within BACOVA_02001at 240.608 kb on + strand, within BACOVA_02001at 240.609 kb on - strand, within BACOVA_02001at 240.649 kb on + strand, within BACOVA_02001at 240.651 kb on - strand, within BACOVA_02001at 240.653 kb on + strand, within BACOVA_02001at 240.654 kb on - strand, within BACOVA_02001at 240.700 kb on + strand, within BACOVA_02001at 240.706 kb on + strand, within BACOVA_02001at 240.707 kb on - strand, within BACOVA_02001at 240.710 kb on + strand, within BACOVA_02001at 240.720 kb on - strand, within BACOVA_02001at 240.727 kb on - strand, within BACOVA_02001at 240.804 kb on - strand, within BACOVA_02001at 240.804 kb on - strand, within BACOVA_02001at 240.815 kb on - strand, within BACOVA_02001at 240.927 kb on + strand, within BACOVA_02001at 240.927 kb on + strand, within BACOVA_02001at 240.928 kb on - strand, within BACOVA_02001at 240.938 kb on + strand, within BACOVA_02001at 240.938 kb on + strand, within BACOVA_02001at 240.944 kb on + strand, within BACOVA_02001at 240.945 kb on - strand, within BACOVA_02001at 240.949 kb on + strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.957 kb on - strand, within BACOVA_02001at 241.004 kb on - strand, within BACOVA_02001at 241.046 kb on + strand, within BACOVA_02001at 241.097 kb on + strand, within BACOVA_02001at 241.098 kb on - strand, within BACOVA_02001at 241.186 kb on - strand, within BACOVA_02001at 241.254 kb on - strandat 241.353 kb on + strandat 241.353 kb on + strandat 241.361 kb on - strandat 241.385 kb on - strandat 241.453 kb on - strandat 241.457 kb on + strandat 241.457 kb on + strandat 241.457 kb on + strandat 241.458 kb on - strandat 241.497 kb on + strand, within BACOVA_02002at 241.499 kb on + strand, within BACOVA_02002at 241.500 kb on - strand, within BACOVA_02002at 241.569 kb on + strand, within BACOVA_02002at 241.571 kb on + strand, within BACOVA_02002at 241.578 kb on + strand, within BACOVA_02002at 241.643 kb on - strand, within BACOVA_02002at 241.702 kb on - strand, within BACOVA_02002at 241.732 kb on + strand, within BACOVA_02002at 241.733 kb on - strand, within BACOVA_02002at 241.735 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.931 kb on + strand, within BACOVA_02002at 241.936 kb on - strand, within BACOVA_02002at 242.048 kb on + strand, within BACOVA_02002at 242.050 kb on + strand, within BACOVA_02002at 242.054 kb on - strand, within BACOVA_02002at 242.054 kb on - strand, within BACOVA_02002at 242.057 kb on + strand, within BACOVA_02002at 242.064 kb on - strand, within BACOVA_02002at 242.067 kb on + strand, within BACOVA_02002at 242.067 kb on + strand, within BACOVA_02002at 242.068 kb on - strand, within BACOVA_02002at 242.119 kb on - strand, within BACOVA_02002at 242.155 kb on + strand, within BACOVA_02002at 242.239 kb on - strand, within BACOVA_02002at 242.239 kb on - strand, within BACOVA_02002at 242.241 kb on - strand, within BACOVA_02002

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
remove
239,398 + BACOVA_02000 0.27 -0.0
239,399 - BACOVA_02000 0.27 +0.6
239,401 + BACOVA_02000 0.27 +0.5
239,401 + BACOVA_02000 0.27 +2.7
239,402 - BACOVA_02000 0.27 -0.9
239,402 - BACOVA_02000 0.27 -1.1
239,403 + BACOVA_02000 0.28 +0.0
239,404 - BACOVA_02000 0.28 -0.3
239,409 + BACOVA_02000 0.28 -0.1
239,409 + BACOVA_02000 0.28 +1.0
239,409 + BACOVA_02000 0.28 -0.2
239,409 + BACOVA_02000 0.28 +0.6
239,410 - BACOVA_02000 0.28 +0.2
239,414 + BACOVA_02000 0.29 -0.2
239,438 + BACOVA_02000 0.31 +0.6
239,439 - BACOVA_02000 0.31 +0.6
239,439 - BACOVA_02000 0.31 +1.6
239,446 + BACOVA_02000 0.31 -0.3
239,447 - BACOVA_02000 0.32 +1.1
239,449 + BACOVA_02000 0.32 -0.4
239,449 + BACOVA_02000 0.32 -1.5
239,514 - BACOVA_02000 0.38 -0.4
239,570 + BACOVA_02000 0.43 -0.8
239,593 + BACOVA_02000 0.45 +1.4
239,596 + BACOVA_02000 0.45 +2.6
239,601 + BACOVA_02000 0.46 +1.4
239,649 - BACOVA_02000 0.50 -2.0
239,651 + BACOVA_02000 0.50 -0.2
239,669 - BACOVA_02000 0.52 -0.4
239,671 + BACOVA_02000 0.52 +0.5
239,672 - BACOVA_02000 0.52 +0.3
239,675 + BACOVA_02000 0.52 +0.6
239,675 + BACOVA_02000 0.52 -0.0
239,678 + BACOVA_02000 0.52 +2.4
239,678 + BACOVA_02000 0.52 +0.9
239,678 + BACOVA_02000 0.52 +1.5
239,679 - BACOVA_02000 0.53 +0.9
239,729 + BACOVA_02000 0.57 +0.5
239,730 - BACOVA_02000 0.57 +0.7
239,730 - BACOVA_02000 0.57 +1.1
239,730 - BACOVA_02000 0.57 -0.6
239,770 - BACOVA_02000 0.61 +0.1
239,777 - BACOVA_02000 0.61 -0.5
239,816 + BACOVA_02000 0.65 -1.3
239,834 + BACOVA_02000 0.67 +1.9
239,872 - BACOVA_02000 0.70 +0.8
239,879 + BACOVA_02000 0.71 -0.7
239,879 + BACOVA_02000 0.71 +2.1
239,889 + BACOVA_02000 0.72 -0.1
239,889 + BACOVA_02000 0.72 +2.5
239,900 - BACOVA_02000 0.73 +1.6
239,906 + BACOVA_02000 0.73 -0.4
239,974 - BACOVA_02000 0.79 +0.6
239,975 + BACOVA_02000 0.79 +1.1
239,976 - BACOVA_02000 0.80 +0.9
239,987 + BACOVA_02000 0.81 +0.1
239,987 + BACOVA_02000 0.81 +0.3
239,996 + BACOVA_02000 0.81 -0.9
240,046 + BACOVA_02000 0.86 +0.3
240,046 + BACOVA_02000 0.86 +1.3
240,047 - BACOVA_02000 0.86 -0.1
240,059 + BACOVA_02000 0.87 -0.7
240,079 + BACOVA_02000 0.89 +1.1
240,080 - BACOVA_02000 0.89 -0.4
240,089 + BACOVA_02000 0.90 +0.7
240,089 + BACOVA_02000 0.90 -0.5
240,090 - BACOVA_02000 0.90 +0.1
240,090 - BACOVA_02000 0.90 -0.2
240,090 - BACOVA_02000 0.90 -0.3
240,090 - BACOVA_02000 0.90 +1.8
240,107 + +0.3
240,112 - -0.3
240,112 - +0.7
240,112 - -1.0
240,113 + -0.4
240,114 - -1.2
240,144 + -1.8
240,166 + +2.1
240,169 + -0.4
240,182 + +0.4
240,193 + -0.2
240,204 + -0.6
240,271 + -0.2
240,341 + -0.2
240,344 - -0.4
240,363 - +0.4
240,379 + +0.8
240,379 + +1.6
240,388 - +0.1
240,435 - +0.7
240,436 + -0.4
240,437 - +1.1
240,437 - -2.3
240,437 - -1.4
240,437 - +0.3
240,440 + BACOVA_02001 0.10 +0.8
240,444 + BACOVA_02001 0.10 -0.7
240,444 + BACOVA_02001 0.10 +0.1
240,445 - BACOVA_02001 0.11 -1.0
240,445 - BACOVA_02001 0.11 +1.3
240,449 + BACOVA_02001 0.11 +1.1
240,450 - BACOVA_02001 0.11 -1.1
240,583 + BACOVA_02001 0.25 -0.3
240,584 - BACOVA_02001 0.25 -0.2
240,606 + BACOVA_02001 0.28 +1.6
240,608 + BACOVA_02001 0.28 -0.4
240,608 + BACOVA_02001 0.28 -0.5
240,609 - BACOVA_02001 0.28 +0.0
240,649 + BACOVA_02001 0.32 +0.4
240,651 - BACOVA_02001 0.32 -0.4
240,653 + BACOVA_02001 0.33 -0.5
240,654 - BACOVA_02001 0.33 +0.8
240,700 + BACOVA_02001 0.38 -0.1
240,706 + BACOVA_02001 0.38 +0.5
240,707 - BACOVA_02001 0.38 +1.5
240,710 + BACOVA_02001 0.39 -1.4
240,720 - BACOVA_02001 0.40 -0.3
240,727 - BACOVA_02001 0.40 -0.7
240,804 - BACOVA_02001 0.49 +0.0
240,804 - BACOVA_02001 0.49 +1.0
240,815 - BACOVA_02001 0.50 -0.9
240,927 + BACOVA_02001 0.62 +1.4
240,927 + BACOVA_02001 0.62 +1.3
240,928 - BACOVA_02001 0.62 +1.0
240,938 + BACOVA_02001 0.63 +0.7
240,938 + BACOVA_02001 0.63 +1.7
240,944 + BACOVA_02001 0.63 +0.4
240,945 - BACOVA_02001 0.63 -1.0
240,949 + BACOVA_02001 0.64 -0.7
240,950 - BACOVA_02001 0.64 +0.9
240,950 - BACOVA_02001 0.64 -1.5
240,950 - BACOVA_02001 0.64 +0.6
240,950 - BACOVA_02001 0.64 -0.4
240,957 - BACOVA_02001 0.65 -0.9
241,004 - BACOVA_02001 0.70 +0.4
241,046 + BACOVA_02001 0.74 -0.4
241,097 + BACOVA_02001 0.80 +0.0
241,098 - BACOVA_02001 0.80 -0.5
241,186 - BACOVA_02001 0.89 -1.0
241,254 - -0.2
241,353 + -1.1
241,353 + -0.9
241,361 - -1.2
241,385 - +0.2
241,453 - -0.3
241,457 + -1.0
241,457 + -0.8
241,457 + -1.2
241,458 - -0.4
241,497 + BACOVA_02002 0.13 -0.7
241,499 + BACOVA_02002 0.13 -1.0
241,500 - BACOVA_02002 0.13 -1.8
241,569 + BACOVA_02002 0.19 -0.2
241,571 + BACOVA_02002 0.19 -2.6
241,578 + BACOVA_02002 0.20 +0.3
241,643 - BACOVA_02002 0.25 -0.4
241,702 - BACOVA_02002 0.29 +0.4
241,732 + BACOVA_02002 0.32 -0.9
241,733 - BACOVA_02002 0.32 +0.8
241,735 + BACOVA_02002 0.32 -1.0
241,901 + BACOVA_02002 0.45 -0.8
241,901 + BACOVA_02002 0.45 -1.9
241,901 + BACOVA_02002 0.45 +1.4
241,901 + BACOVA_02002 0.45 -0.8
241,931 + BACOVA_02002 0.48 -0.1
241,936 - BACOVA_02002 0.48 -0.8
242,048 + BACOVA_02002 0.57 -3.6
242,050 + BACOVA_02002 0.57 +0.3
242,054 - BACOVA_02002 0.58 -1.6
242,054 - BACOVA_02002 0.58 +0.4
242,057 + BACOVA_02002 0.58 -2.4
242,064 - BACOVA_02002 0.59 -0.3
242,067 + BACOVA_02002 0.59 +0.8
242,067 + BACOVA_02002 0.59 -3.4
242,068 - BACOVA_02002 0.59 -1.0
242,119 - BACOVA_02002 0.63 -1.4
242,155 + BACOVA_02002 0.66 +1.3
242,239 - BACOVA_02002 0.73 -1.1
242,239 - BACOVA_02002 0.73 -2.2
242,241 - BACOVA_02002 0.73 -1.3

Or see this region's nucleotide sequence