Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01323

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01321 and BACOVA_01322 are separated by 97 nucleotidesBACOVA_01322 and BACOVA_01323 are separated by 1 nucleotidesBACOVA_01323 and BACOVA_01324 are separated by 228 nucleotides BACOVA_01321: BACOVA_01321 - TonB-linked outer membrane protein, SusC/RagA family, at 125,348 to 128,506 _01321 BACOVA_01322: BACOVA_01322 - Sigma-70 region 2, at 128,604 to 129,134 _01322 BACOVA_01323: BACOVA_01323 - hypothetical protein, at 129,136 to 129,546 _01323 BACOVA_01324: BACOVA_01324 - hypothetical protein, at 129,775 to 132,519 _01324 Position (kb) 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 128.166 kb on + strand, within BACOVA_01321at 128.260 kb on + strandat 128.262 kb on + strandat 128.271 kb on + strandat 128.271 kb on + strandat 128.271 kb on + strandat 128.272 kb on - strandat 128.272 kb on - strandat 128.277 kb on - strandat 128.417 kb on + strandat 128.449 kb on + strandat 128.490 kb on - strandat 128.519 kb on + strandat 128.591 kb on + strandat 128.594 kb on - strandat 128.598 kb on + strandat 128.640 kb on - strandat 128.669 kb on + strand, within BACOVA_01322at 128.733 kb on + strand, within BACOVA_01322at 128.734 kb on - strand, within BACOVA_01322at 128.734 kb on - strand, within BACOVA_01322at 128.770 kb on - strand, within BACOVA_01322at 128.857 kb on + strand, within BACOVA_01322at 128.897 kb on - strand, within BACOVA_01322at 128.919 kb on + strand, within BACOVA_01322at 128.968 kb on + strand, within BACOVA_01322at 129.039 kb on + strand, within BACOVA_01322at 129.041 kb on + strand, within BACOVA_01322at 129.159 kb on + strandat 129.207 kb on + strand, within BACOVA_01323at 129.207 kb on + strand, within BACOVA_01323at 129.211 kb on + strand, within BACOVA_01323at 129.229 kb on - strand, within BACOVA_01323at 129.241 kb on + strand, within BACOVA_01323at 129.241 kb on + strand, within BACOVA_01323at 129.260 kb on + strand, within BACOVA_01323at 129.264 kb on + strand, within BACOVA_01323at 129.264 kb on + strand, within BACOVA_01323at 129.265 kb on - strand, within BACOVA_01323at 129.265 kb on - strand, within BACOVA_01323at 129.266 kb on + strand, within BACOVA_01323at 129.267 kb on - strand, within BACOVA_01323at 129.283 kb on + strand, within BACOVA_01323at 129.286 kb on + strand, within BACOVA_01323at 129.287 kb on - strand, within BACOVA_01323at 129.292 kb on + strand, within BACOVA_01323at 129.293 kb on - strand, within BACOVA_01323at 129.293 kb on - strand, within BACOVA_01323at 129.384 kb on + strand, within BACOVA_01323at 129.432 kb on + strand, within BACOVA_01323at 129.496 kb on + strand, within BACOVA_01323at 129.514 kb on + strandat 129.524 kb on - strandat 129.546 kb on + strandat 129.549 kb on + strandat 129.550 kb on - strandat 129.560 kb on + strandat 129.590 kb on - strandat 129.626 kb on + strandat 129.627 kb on - strandat 129.718 kb on - strandat 129.718 kb on - strandat 129.813 kb on - strandat 129.835 kb on + strandat 129.855 kb on - strandat 129.873 kb on + strandat 129.906 kb on + strandat 129.961 kb on + strandat 129.961 kb on + strandat 129.962 kb on - strandat 129.962 kb on - strandat 129.962 kb on - strandat 129.966 kb on + strandat 129.966 kb on + strandat 130.100 kb on + strand, within BACOVA_01324at 130.101 kb on - strand, within BACOVA_01324at 130.122 kb on + strand, within BACOVA_01324at 130.164 kb on + strand, within BACOVA_01324at 130.165 kb on - strand, within BACOVA_01324at 130.187 kb on - strand, within BACOVA_01324at 130.187 kb on - strand, within BACOVA_01324at 130.187 kb on - strand, within BACOVA_01324at 130.187 kb on - strand, within BACOVA_01324at 130.189 kb on + strand, within BACOVA_01324at 130.189 kb on + strand, within BACOVA_01324at 130.190 kb on - strand, within BACOVA_01324at 130.246 kb on + strand, within BACOVA_01324at 130.249 kb on + strand, within BACOVA_01324at 130.249 kb on + strand, within BACOVA_01324at 130.250 kb on - strand, within BACOVA_01324at 130.252 kb on + strand, within BACOVA_01324at 130.257 kb on + strand, within BACOVA_01324at 130.261 kb on + strand, within BACOVA_01324at 130.267 kb on + strand, within BACOVA_01324at 130.268 kb on - strand, within BACOVA_01324at 130.282 kb on + strand, within BACOVA_01324at 130.282 kb on + strand, within BACOVA_01324at 130.294 kb on - strand, within BACOVA_01324at 130.299 kb on + strand, within BACOVA_01324at 130.299 kb on + strand, within BACOVA_01324at 130.300 kb on - strand, within BACOVA_01324at 130.300 kb on - strand, within BACOVA_01324at 130.317 kb on - strand, within BACOVA_01324at 130.317 kb on - strand, within BACOVA_01324at 130.321 kb on - strand, within BACOVA_01324at 130.373 kb on + strand, within BACOVA_01324at 130.374 kb on - strand, within BACOVA_01324at 130.374 kb on - strand, within BACOVA_01324at 130.374 kb on - strand, within BACOVA_01324at 130.398 kb on - strand, within BACOVA_01324at 130.438 kb on - strand, within BACOVA_01324at 130.458 kb on - strand, within BACOVA_01324at 130.463 kb on + strand, within BACOVA_01324at 130.475 kb on + strand, within BACOVA_01324at 130.488 kb on - strand, within BACOVA_01324at 130.494 kb on + strand, within BACOVA_01324

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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128,166 + BACOVA_01321 0.89 +0.5
128,260 + -0.1
128,262 + +1.2
128,271 + +0.8
128,271 + -0.4
128,271 + -0.4
128,272 - +1.1
128,272 - -1.5
128,277 - +0.9
128,417 + +1.0
128,449 + +0.5
128,490 - -1.2
128,519 + -0.5
128,591 + +0.9
128,594 - -0.8
128,598 + +1.3
128,640 - -0.7
128,669 + BACOVA_01322 0.12 -1.0
128,733 + BACOVA_01322 0.24 +1.1
128,734 - BACOVA_01322 0.24 +0.5
128,734 - BACOVA_01322 0.24 -1.1
128,770 - BACOVA_01322 0.31 +0.6
128,857 + BACOVA_01322 0.48 -0.8
128,897 - BACOVA_01322 0.55 -0.8
128,919 + BACOVA_01322 0.59 -0.4
128,968 + BACOVA_01322 0.69 -0.4
129,039 + BACOVA_01322 0.82 +1.3
129,041 + BACOVA_01322 0.82 +0.5
129,159 + -0.5
129,207 + BACOVA_01323 0.17 -0.1
129,207 + BACOVA_01323 0.17 -0.7
129,211 + BACOVA_01323 0.18 -0.4
129,229 - BACOVA_01323 0.23 -0.5
129,241 + BACOVA_01323 0.26 -0.8
129,241 + BACOVA_01323 0.26 +1.6
129,260 + BACOVA_01323 0.30 +3.1
129,264 + BACOVA_01323 0.31 +1.3
129,264 + BACOVA_01323 0.31 +1.9
129,265 - BACOVA_01323 0.31 +0.1
129,265 - BACOVA_01323 0.31 -3.5
129,266 + BACOVA_01323 0.32 +1.0
129,267 - BACOVA_01323 0.32 +0.8
129,283 + BACOVA_01323 0.36 -1.8
129,286 + BACOVA_01323 0.36 +0.5
129,287 - BACOVA_01323 0.37 -0.2
129,292 + BACOVA_01323 0.38 +0.5
129,293 - BACOVA_01323 0.38 +0.1
129,293 - BACOVA_01323 0.38 +0.5
129,384 + BACOVA_01323 0.60 +0.1
129,432 + BACOVA_01323 0.72 +1.6
129,496 + BACOVA_01323 0.88 +0.3
129,514 + +0.8
129,524 - +0.7
129,546 + -0.3
129,549 + -1.0
129,550 - -0.1
129,560 + +1.3
129,590 - -0.9
129,626 + -0.5
129,627 - -0.6
129,718 - +0.5
129,718 - -0.1
129,813 - +0.2
129,835 + +3.4
129,855 - -1.3
129,873 + -0.1
129,906 + +0.8
129,961 + +0.3
129,961 + -0.3
129,962 - -0.3
129,962 - +0.9
129,962 - -2.0
129,966 + -0.2
129,966 + +2.9
130,100 + BACOVA_01324 0.12 -1.0
130,101 - BACOVA_01324 0.12 +0.0
130,122 + BACOVA_01324 0.13 -0.7
130,164 + BACOVA_01324 0.14 -2.0
130,165 - BACOVA_01324 0.14 +0.5
130,187 - BACOVA_01324 0.15 +0.7
130,187 - BACOVA_01324 0.15 +0.4
130,187 - BACOVA_01324 0.15 -0.5
130,187 - BACOVA_01324 0.15 -3.4
130,189 + BACOVA_01324 0.15 +0.3
130,189 + BACOVA_01324 0.15 +0.6
130,190 - BACOVA_01324 0.15 +0.3
130,246 + BACOVA_01324 0.17 -0.9
130,249 + BACOVA_01324 0.17 -0.6
130,249 + BACOVA_01324 0.17 +0.1
130,250 - BACOVA_01324 0.17 +0.2
130,252 + BACOVA_01324 0.17 -0.2
130,257 + BACOVA_01324 0.18 -1.7
130,261 + BACOVA_01324 0.18 +0.7
130,267 + BACOVA_01324 0.18 +0.6
130,268 - BACOVA_01324 0.18 -0.4
130,282 + BACOVA_01324 0.18 +0.7
130,282 + BACOVA_01324 0.18 +0.5
130,294 - BACOVA_01324 0.19 +0.1
130,299 + BACOVA_01324 0.19 +0.1
130,299 + BACOVA_01324 0.19 +0.5
130,300 - BACOVA_01324 0.19 -0.5
130,300 - BACOVA_01324 0.19 +0.9
130,317 - BACOVA_01324 0.20 +0.8
130,317 - BACOVA_01324 0.20 -0.3
130,321 - BACOVA_01324 0.20 -0.2
130,373 + BACOVA_01324 0.22 -0.2
130,374 - BACOVA_01324 0.22 +0.1
130,374 - BACOVA_01324 0.22 -0.3
130,374 - BACOVA_01324 0.22 +1.2
130,398 - BACOVA_01324 0.23 -1.4
130,438 - BACOVA_01324 0.24 -0.5
130,458 - BACOVA_01324 0.25 -1.8
130,463 + BACOVA_01324 0.25 -0.1
130,475 + BACOVA_01324 0.26 +0.4
130,488 - BACOVA_01324 0.26 +0.0
130,494 + BACOVA_01324 0.26 -0.6

Or see this region's nucleotide sequence