Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00291

Experiment: T2 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00289 and OHPLBJKB_00290 are separated by 58 nucleotidesOHPLBJKB_00290 and OHPLBJKB_00291 are separated by 37 nucleotidesOHPLBJKB_00291 and OHPLBJKB_00292 are separated by 28 nucleotides OHPLBJKB_00289: OHPLBJKB_00289 - Fe/S biogenesis protein NfuA, at 320,362 to 320,937 _00289 OHPLBJKB_00290: OHPLBJKB_00290 - hypothetical protein, at 320,996 to 321,679 _00290 OHPLBJKB_00291: OHPLBJKB_00291 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 321,717 to 322,487 _00291 OHPLBJKB_00292: OHPLBJKB_00292 - ISNCY family transposase ISVsa17, at 322,516 to 323,394 _00292 Position (kb) 321 322 323Strain fitness (log2 ratio) -2 -1 0 1 2 3at 320.723 kb on + strand, within OHPLBJKB_00289at 320.734 kb on + strand, within OHPLBJKB_00289at 320.734 kb on + strand, within OHPLBJKB_00289at 320.747 kb on + strand, within OHPLBJKB_00289at 320.748 kb on - strand, within OHPLBJKB_00289at 320.748 kb on - strand, within OHPLBJKB_00289at 320.748 kb on - strand, within OHPLBJKB_00289at 320.748 kb on - strand, within OHPLBJKB_00289at 320.748 kb on - strand, within OHPLBJKB_00289at 320.748 kb on - strand, within OHPLBJKB_00289at 320.929 kb on - strandat 320.938 kb on - strandat 320.940 kb on + strandat 320.941 kb on - strandat 320.941 kb on - strandat 320.941 kb on - strandat 320.941 kb on - strandat 320.952 kb on - strandat 320.973 kb on - strandat 320.997 kb on + strandat 320.997 kb on + strandat 320.998 kb on - strandat 320.998 kb on - strandat 321.047 kb on + strandat 321.076 kb on + strand, within OHPLBJKB_00290at 321.076 kb on + strand, within OHPLBJKB_00290at 321.112 kb on + strand, within OHPLBJKB_00290at 321.211 kb on + strand, within OHPLBJKB_00290at 321.211 kb on + strand, within OHPLBJKB_00290at 321.211 kb on + strand, within OHPLBJKB_00290at 321.212 kb on - strand, within OHPLBJKB_00290at 321.212 kb on - strand, within OHPLBJKB_00290at 321.212 kb on - strand, within OHPLBJKB_00290at 321.286 kb on + strand, within OHPLBJKB_00290at 321.287 kb on - strand, within OHPLBJKB_00290at 321.389 kb on + strand, within OHPLBJKB_00290at 321.459 kb on - strand, within OHPLBJKB_00290at 321.573 kb on - strand, within OHPLBJKB_00290at 321.580 kb on + strand, within OHPLBJKB_00290at 321.580 kb on + strand, within OHPLBJKB_00290at 321.581 kb on - strand, within OHPLBJKB_00290at 321.650 kb on + strandat 321.675 kb on - strandat 321.675 kb on - strandat 321.679 kb on + strandat 321.679 kb on + strandat 321.679 kb on + strandat 321.679 kb on + strandat 321.679 kb on + strandat 321.679 kb on + strandat 321.679 kb on + strandat 321.679 kb on + strandat 321.680 kb on - strandat 321.680 kb on - strandat 321.680 kb on - strandat 321.680 kb on - strandat 321.680 kb on - strandat 321.680 kb on - strandat 321.680 kb on - strandat 321.680 kb on - strandat 321.693 kb on + strandat 321.693 kb on + strandat 321.693 kb on + strandat 321.694 kb on - strandat 321.694 kb on - strandat 321.694 kb on - strandat 321.694 kb on - strandat 321.711 kb on + strandat 321.722 kb on + strandat 321.722 kb on + strandat 321.723 kb on - strandat 321.723 kb on - strandat 321.824 kb on + strand, within OHPLBJKB_00291at 321.825 kb on - strand, within OHPLBJKB_00291at 321.836 kb on + strand, within OHPLBJKB_00291at 322.130 kb on + strand, within OHPLBJKB_00291at 322.130 kb on + strand, within OHPLBJKB_00291at 322.131 kb on - strand, within OHPLBJKB_00291at 322.323 kb on + strand, within OHPLBJKB_00291at 322.323 kb on + strand, within OHPLBJKB_00291at 322.323 kb on + strand, within OHPLBJKB_00291at 322.324 kb on - strand, within OHPLBJKB_00291at 322.324 kb on - strand, within OHPLBJKB_00291at 322.324 kb on - strand, within OHPLBJKB_00291at 322.324 kb on - strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.398 kb on + strand, within OHPLBJKB_00291at 322.399 kb on - strand, within OHPLBJKB_00291at 322.399 kb on - strand, within OHPLBJKB_00291at 322.399 kb on - strand, within OHPLBJKB_00291at 322.399 kb on - strand, within OHPLBJKB_00291at 322.399 kb on - strand, within OHPLBJKB_00291at 322.399 kb on - strand, within OHPLBJKB_00291at 322.399 kb on - strand, within OHPLBJKB_00291at 322.400 kb on + strand, within OHPLBJKB_00291at 322.400 kb on + strand, within OHPLBJKB_00291at 322.400 kb on + strand, within OHPLBJKB_00291at 322.400 kb on + strand, within OHPLBJKB_00291at 322.401 kb on - strand, within OHPLBJKB_00291at 322.401 kb on - strand, within OHPLBJKB_00291at 322.401 kb on - strand, within OHPLBJKB_00291at 322.401 kb on - strand, within OHPLBJKB_00291at 322.485 kb on + strandat 322.517 kb on + strandat 322.575 kb on + strandat 322.600 kb on + strandat 322.600 kb on + strandat 322.600 kb on + strandat 322.601 kb on - strandat 322.610 kb on - strand, within OHPLBJKB_00292at 322.611 kb on + strand, within OHPLBJKB_00292at 322.612 kb on - strand, within OHPLBJKB_00292at 322.726 kb on + strand, within OHPLBJKB_00292at 322.726 kb on + strand, within OHPLBJKB_00292at 322.748 kb on - strand, within OHPLBJKB_00292at 322.748 kb on - strand, within OHPLBJKB_00292at 322.751 kb on + strand, within OHPLBJKB_00292at 322.751 kb on + strand, within OHPLBJKB_00292at 322.751 kb on + strand, within OHPLBJKB_00292at 322.752 kb on - strand, within OHPLBJKB_00292at 322.756 kb on - strand, within OHPLBJKB_00292at 322.756 kb on - strand, within OHPLBJKB_00292at 322.798 kb on + strand, within OHPLBJKB_00292at 322.799 kb on - strand, within OHPLBJKB_00292at 322.799 kb on - strand, within OHPLBJKB_00292at 322.799 kb on - strand, within OHPLBJKB_00292at 322.799 kb on - strand, within OHPLBJKB_00292at 322.801 kb on + strand, within OHPLBJKB_00292at 322.802 kb on - strand, within OHPLBJKB_00292at 322.802 kb on - strand, within OHPLBJKB_00292at 322.802 kb on - strand, within OHPLBJKB_00292at 322.802 kb on - strand, within OHPLBJKB_00292at 322.802 kb on - strand, within OHPLBJKB_00292at 322.849 kb on - strand, within OHPLBJKB_00292at 322.849 kb on - strand, within OHPLBJKB_00292at 322.861 kb on + strand, within OHPLBJKB_00292at 322.862 kb on - strand, within OHPLBJKB_00292at 322.878 kb on + strand, within OHPLBJKB_00292at 322.878 kb on + strand, within OHPLBJKB_00292at 322.878 kb on + strand, within OHPLBJKB_00292at 322.878 kb on + strand, within OHPLBJKB_00292at 322.878 kb on + strand, within OHPLBJKB_00292at 322.879 kb on - strand, within OHPLBJKB_00292at 322.879 kb on - strand, within OHPLBJKB_00292at 322.946 kb on + strand, within OHPLBJKB_00292at 322.946 kb on + strand, within OHPLBJKB_00292at 323.001 kb on - strand, within OHPLBJKB_00292at 323.019 kb on + strand, within OHPLBJKB_00292at 323.027 kb on + strand, within OHPLBJKB_00292at 323.027 kb on + strand, within OHPLBJKB_00292at 323.103 kb on - strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.162 kb on + strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.163 kb on - strand, within OHPLBJKB_00292at 323.169 kb on - strand, within OHPLBJKB_00292at 323.239 kb on - strand, within OHPLBJKB_00292at 323.272 kb on - strand, within OHPLBJKB_00292at 323.388 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T2 MOI10
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320,723 + OHPLBJKB_00289 0.63 -0.1
320,734 + OHPLBJKB_00289 0.65 -0.3
320,734 + OHPLBJKB_00289 0.65 -0.1
320,747 + OHPLBJKB_00289 0.67 -0.9
320,748 - OHPLBJKB_00289 0.67 -0.9
320,748 - OHPLBJKB_00289 0.67 +1.2
320,748 - OHPLBJKB_00289 0.67 +0.3
320,748 - OHPLBJKB_00289 0.67 -0.7
320,748 - OHPLBJKB_00289 0.67 -0.7
320,748 - OHPLBJKB_00289 0.67 -0.1
320,929 - +0.2
320,938 - +0.3
320,940 + +1.1
320,941 - -1.1
320,941 - +0.5
320,941 - -1.3
320,941 - +0.3
320,952 - -1.4
320,973 - +0.3
320,997 + -0.4
320,997 + -0.3
320,998 - +0.0
320,998 - -0.6
321,047 + +0.3
321,076 + OHPLBJKB_00290 0.12 +0.9
321,076 + OHPLBJKB_00290 0.12 -0.7
321,112 + OHPLBJKB_00290 0.17 +0.6
321,211 + OHPLBJKB_00290 0.31 -0.3
321,211 + OHPLBJKB_00290 0.31 -0.2
321,211 + OHPLBJKB_00290 0.31 +0.3
321,212 - OHPLBJKB_00290 0.32 +0.4
321,212 - OHPLBJKB_00290 0.32 -0.6
321,212 - OHPLBJKB_00290 0.32 +0.6
321,286 + OHPLBJKB_00290 0.42 -1.2
321,287 - OHPLBJKB_00290 0.43 -0.3
321,389 + OHPLBJKB_00290 0.57 -0.5
321,459 - OHPLBJKB_00290 0.68 -0.5
321,573 - OHPLBJKB_00290 0.84 +0.8
321,580 + OHPLBJKB_00290 0.85 -0.1
321,580 + OHPLBJKB_00290 0.85 +0.4
321,581 - OHPLBJKB_00290 0.86 -0.3
321,650 + -0.1
321,675 - +0.1
321,675 - -0.3
321,679 + -0.0
321,679 + -0.5
321,679 + +0.6
321,679 + +0.4
321,679 + +0.8
321,679 + -0.2
321,679 + -0.5
321,679 + -0.9
321,680 - -1.5
321,680 - +0.2
321,680 - -0.4
321,680 - +0.1
321,680 - -0.9
321,680 - +2.9
321,680 - +0.1
321,680 - +0.7
321,693 + -0.2
321,693 + -0.3
321,693 + +0.6
321,694 - +0.3
321,694 - -2.4
321,694 - +0.1
321,694 - -0.7
321,711 + +0.1
321,722 + +0.3
321,722 + -0.9
321,723 - +0.1
321,723 - -0.4
321,824 + OHPLBJKB_00291 0.14 -0.3
321,825 - OHPLBJKB_00291 0.14 -0.8
321,836 + OHPLBJKB_00291 0.15 -0.4
322,130 + OHPLBJKB_00291 0.54 -0.6
322,130 + OHPLBJKB_00291 0.54 +0.9
322,131 - OHPLBJKB_00291 0.54 -1.4
322,323 + OHPLBJKB_00291 0.79 -0.2
322,323 + OHPLBJKB_00291 0.79 +0.3
322,323 + OHPLBJKB_00291 0.79 -0.3
322,324 - OHPLBJKB_00291 0.79 +0.1
322,324 - OHPLBJKB_00291 0.79 -1.1
322,324 - OHPLBJKB_00291 0.79 -0.4
322,324 - OHPLBJKB_00291 0.79 +0.1
322,398 + OHPLBJKB_00291 0.88 +1.0
322,398 + OHPLBJKB_00291 0.88 +0.2
322,398 + OHPLBJKB_00291 0.88 +0.0
322,398 + OHPLBJKB_00291 0.88 -0.1
322,398 + OHPLBJKB_00291 0.88 +0.2
322,398 + OHPLBJKB_00291 0.88 -0.9
322,398 + OHPLBJKB_00291 0.88 -0.3
322,398 + OHPLBJKB_00291 0.88 -1.0
322,399 - OHPLBJKB_00291 0.88 +0.0
322,399 - OHPLBJKB_00291 0.88 -1.6
322,399 - OHPLBJKB_00291 0.88 +0.1
322,399 - OHPLBJKB_00291 0.88 -2.4
322,399 - OHPLBJKB_00291 0.88 +0.2
322,399 - OHPLBJKB_00291 0.88 -0.3
322,399 - OHPLBJKB_00291 0.88 +0.1
322,400 + OHPLBJKB_00291 0.89 -0.6
322,400 + OHPLBJKB_00291 0.89 +0.9
322,400 + OHPLBJKB_00291 0.89 -0.6
322,400 + OHPLBJKB_00291 0.89 +1.7
322,401 - OHPLBJKB_00291 0.89 -0.4
322,401 - OHPLBJKB_00291 0.89 -1.0
322,401 - OHPLBJKB_00291 0.89 +1.0
322,401 - OHPLBJKB_00291 0.89 -0.4
322,485 + -0.1
322,517 + -0.1
322,575 + +0.3
322,600 + -1.0
322,600 + +0.9
322,600 + +0.3
322,601 - -0.2
322,610 - OHPLBJKB_00292 0.11 +0.2
322,611 + OHPLBJKB_00292 0.11 +0.2
322,612 - OHPLBJKB_00292 0.11 -1.6
322,726 + OHPLBJKB_00292 0.24 +0.1
322,726 + OHPLBJKB_00292 0.24 -0.3
322,748 - OHPLBJKB_00292 0.26 +0.3
322,748 - OHPLBJKB_00292 0.26 +0.1
322,751 + OHPLBJKB_00292 0.27 -0.4
322,751 + OHPLBJKB_00292 0.27 +0.8
322,751 + OHPLBJKB_00292 0.27 +0.6
322,752 - OHPLBJKB_00292 0.27 +0.0
322,756 - OHPLBJKB_00292 0.27 -0.3
322,756 - OHPLBJKB_00292 0.27 -0.9
322,798 + OHPLBJKB_00292 0.32 +0.1
322,799 - OHPLBJKB_00292 0.32 -0.0
322,799 - OHPLBJKB_00292 0.32 -0.4
322,799 - OHPLBJKB_00292 0.32 -0.4
322,799 - OHPLBJKB_00292 0.32 +0.7
322,801 + OHPLBJKB_00292 0.32 -0.2
322,802 - OHPLBJKB_00292 0.33 +1.0
322,802 - OHPLBJKB_00292 0.33 -0.2
322,802 - OHPLBJKB_00292 0.33 -0.9
322,802 - OHPLBJKB_00292 0.33 +0.6
322,802 - OHPLBJKB_00292 0.33 +0.6
322,849 - OHPLBJKB_00292 0.38 -0.0
322,849 - OHPLBJKB_00292 0.38 +0.9
322,861 + OHPLBJKB_00292 0.39 +0.6
322,862 - OHPLBJKB_00292 0.39 +0.2
322,878 + OHPLBJKB_00292 0.41 -0.4
322,878 + OHPLBJKB_00292 0.41 -0.6
322,878 + OHPLBJKB_00292 0.41 +0.8
322,878 + OHPLBJKB_00292 0.41 -0.8
322,878 + OHPLBJKB_00292 0.41 -0.9
322,879 - OHPLBJKB_00292 0.41 -0.3
322,879 - OHPLBJKB_00292 0.41 +0.7
322,946 + OHPLBJKB_00292 0.49 +0.4
322,946 + OHPLBJKB_00292 0.49 -0.4
323,001 - OHPLBJKB_00292 0.55 +1.0
323,019 + OHPLBJKB_00292 0.57 +0.4
323,027 + OHPLBJKB_00292 0.58 -0.3
323,027 + OHPLBJKB_00292 0.58 -0.5
323,103 - OHPLBJKB_00292 0.67 +0.1
323,162 + OHPLBJKB_00292 0.73 -0.6
323,162 + OHPLBJKB_00292 0.73 +0.8
323,162 + OHPLBJKB_00292 0.73 +0.8
323,162 + OHPLBJKB_00292 0.73 +0.4
323,162 + OHPLBJKB_00292 0.73 +0.9
323,162 + OHPLBJKB_00292 0.73 +0.3
323,162 + OHPLBJKB_00292 0.73 +0.6
323,162 + OHPLBJKB_00292 0.73 +0.6
323,163 - OHPLBJKB_00292 0.74 -0.3
323,163 - OHPLBJKB_00292 0.74 +0.0
323,163 - OHPLBJKB_00292 0.74 -1.1
323,163 - OHPLBJKB_00292 0.74 +0.4
323,163 - OHPLBJKB_00292 0.74 -0.3
323,163 - OHPLBJKB_00292 0.74 +0.3
323,163 - OHPLBJKB_00292 0.74 +0.5
323,163 - OHPLBJKB_00292 0.74 -0.6
323,169 - OHPLBJKB_00292 0.74 -0.7
323,239 - OHPLBJKB_00292 0.82 +0.2
323,272 - OHPLBJKB_00292 0.86 -0.4
323,388 + +1.2

Or see this region's nucleotide sequence