Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02433

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02431 and BACOVA_02432 are separated by 57 nucleotidesBACOVA_02432 and BACOVA_02433 are separated by 30 nucleotidesBACOVA_02433 and BACOVA_02435 are separated by 104 nucleotidesBACOVA_02435 and BACOVA_02434 overlap by 17 nucleotides BACOVA_02431: BACOVA_02431 - hypothetical protein, at 196,729 to 196,836 _02431 BACOVA_02432: BACOVA_02432 - transcriptional regulator, AraC family, at 196,894 to 197,793 _02432 BACOVA_02433: BACOVA_02433 - transcriptional regulator, AraC family, at 197,824 to 198,726 _02433 BACOVA_02435: BACOVA_02435 - hypothetical protein, at 198,831 to 198,947 _02435 BACOVA_02434: BACOVA_02434 - NAD dependent epimerase/dehydratase family protein, at 198,931 to 199,938 _02434 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.874 kb on - strandat 196.890 kb on - strandat 196.904 kb on - strandat 197.013 kb on + strand, within BACOVA_02432at 197.014 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.145 kb on + strand, within BACOVA_02432at 197.146 kb on - strand, within BACOVA_02432at 197.155 kb on + strand, within BACOVA_02432at 197.158 kb on - strand, within BACOVA_02432at 197.221 kb on - strand, within BACOVA_02432at 197.229 kb on + strand, within BACOVA_02432at 197.241 kb on + strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.297 kb on - strand, within BACOVA_02432at 197.301 kb on - strand, within BACOVA_02432at 197.311 kb on + strand, within BACOVA_02432at 197.323 kb on - strand, within BACOVA_02432at 197.362 kb on - strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.408 kb on - strand, within BACOVA_02432at 197.426 kb on + strand, within BACOVA_02432at 197.439 kb on + strand, within BACOVA_02432at 197.440 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.445 kb on + strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.455 kb on - strand, within BACOVA_02432at 197.501 kb on - strand, within BACOVA_02432at 197.503 kb on - strand, within BACOVA_02432at 197.526 kb on + strand, within BACOVA_02432at 197.527 kb on - strand, within BACOVA_02432at 197.542 kb on - strand, within BACOVA_02432at 197.547 kb on + strand, within BACOVA_02432at 197.547 kb on + strand, within BACOVA_02432at 197.577 kb on + strand, within BACOVA_02432at 197.609 kb on + strand, within BACOVA_02432at 197.609 kb on + strand, within BACOVA_02432at 197.610 kb on - strand, within BACOVA_02432at 197.610 kb on - strand, within BACOVA_02432at 197.615 kb on + strand, within BACOVA_02432at 197.616 kb on - strand, within BACOVA_02432at 197.629 kb on - strand, within BACOVA_02432at 197.652 kb on - strand, within BACOVA_02432at 197.652 kb on - strand, within BACOVA_02432at 197.714 kb on - strandat 197.784 kb on + strandat 197.784 kb on + strandat 197.785 kb on - strandat 197.785 kb on - strandat 197.810 kb on + strandat 197.819 kb on + strandat 197.841 kb on - strandat 197.841 kb on - strandat 197.916 kb on - strand, within BACOVA_02433at 197.916 kb on - strand, within BACOVA_02433at 197.974 kb on - strand, within BACOVA_02433at 197.990 kb on + strand, within BACOVA_02433at 197.991 kb on - strand, within BACOVA_02433at 198.131 kb on - strand, within BACOVA_02433at 198.145 kb on - strand, within BACOVA_02433at 198.151 kb on + strand, within BACOVA_02433at 198.152 kb on - strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.178 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.210 kb on - strand, within BACOVA_02433at 198.217 kb on + strand, within BACOVA_02433at 198.241 kb on - strand, within BACOVA_02433at 198.267 kb on + strand, within BACOVA_02433at 198.268 kb on - strand, within BACOVA_02433at 198.295 kb on + strand, within BACOVA_02433at 198.296 kb on - strand, within BACOVA_02433at 198.356 kb on + strand, within BACOVA_02433at 198.391 kb on + strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.600 kb on + strand, within BACOVA_02433at 198.606 kb on + strand, within BACOVA_02433at 198.609 kb on - strand, within BACOVA_02433at 198.624 kb on + strand, within BACOVA_02433at 198.643 kb on + strandat 198.644 kb on - strandat 198.648 kb on + strandat 198.652 kb on + strandat 198.716 kb on - strandat 198.737 kb on - strandat 198.755 kb on + strandat 198.756 kb on - strandat 198.771 kb on - strandat 198.800 kb on - strandat 198.827 kb on + strandat 198.829 kb on + strandat 198.836 kb on + strandat 198.898 kb on - strand, within BACOVA_02435at 198.898 kb on - strand, within BACOVA_02435at 198.914 kb on - strand, within BACOVA_02435at 198.915 kb on + strand, within BACOVA_02435at 198.930 kb on + strand, within BACOVA_02435at 198.941 kb on + strandat 198.961 kb on - strandat 198.964 kb on - strandat 198.969 kb on + strandat 198.978 kb on - strandat 199.012 kb on - strandat 199.118 kb on - strand, within BACOVA_02434at 199.160 kb on + strand, within BACOVA_02434at 199.160 kb on + strand, within BACOVA_02434at 199.161 kb on - strand, within BACOVA_02434at 199.170 kb on + strand, within BACOVA_02434at 199.189 kb on - strand, within BACOVA_02434at 199.201 kb on + strand, within BACOVA_02434at 199.311 kb on - strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.387 kb on + strand, within BACOVA_02434at 199.387 kb on + strand, within BACOVA_02434at 199.390 kb on - strand, within BACOVA_02434at 199.425 kb on + strand, within BACOVA_02434at 199.602 kb on + strand, within BACOVA_02434at 199.603 kb on - strand, within BACOVA_02434at 199.603 kb on - strand, within BACOVA_02434at 199.671 kb on - strand, within BACOVA_02434

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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196,874 - -0.7
196,890 - +0.4
196,904 - -1.5
197,013 + BACOVA_02432 0.13 +0.2
197,014 - BACOVA_02432 0.13 +0.1
197,061 - BACOVA_02432 0.19 -0.4
197,061 - BACOVA_02432 0.19 +0.5
197,141 + BACOVA_02432 0.27 +1.9
197,141 + BACOVA_02432 0.27 +0.9
197,141 + BACOVA_02432 0.27 -0.0
197,145 + BACOVA_02432 0.28 +0.8
197,146 - BACOVA_02432 0.28 +0.5
197,155 + BACOVA_02432 0.29 -0.3
197,158 - BACOVA_02432 0.29 -0.6
197,221 - BACOVA_02432 0.36 +0.1
197,229 + BACOVA_02432 0.37 -1.2
197,241 + BACOVA_02432 0.39 +0.1
197,248 - BACOVA_02432 0.39 +1.3
197,248 - BACOVA_02432 0.39 +0.9
197,290 + BACOVA_02432 0.44 +0.3
197,290 + BACOVA_02432 0.44 +0.5
197,291 - BACOVA_02432 0.44 +0.5
197,291 - BACOVA_02432 0.44 +0.5
197,297 - BACOVA_02432 0.45 -2.5
197,301 - BACOVA_02432 0.45 -1.4
197,311 + BACOVA_02432 0.46 +0.5
197,323 - BACOVA_02432 0.48 -1.1
197,362 - BACOVA_02432 0.52 +0.9
197,403 + BACOVA_02432 0.57 +0.5
197,403 + BACOVA_02432 0.57 +0.9
197,407 + BACOVA_02432 0.57 -0.6
197,407 + BACOVA_02432 0.57 +0.3
197,407 + BACOVA_02432 0.57 -0.2
197,408 - BACOVA_02432 0.57 +0.8
197,426 + BACOVA_02432 0.59 -0.5
197,439 + BACOVA_02432 0.61 -0.9
197,440 - BACOVA_02432 0.61 -0.2
197,442 - BACOVA_02432 0.61 -0.5
197,442 - BACOVA_02432 0.61 -1.2
197,445 + BACOVA_02432 0.61 +1.5
197,446 - BACOVA_02432 0.61 -0.3
197,446 - BACOVA_02432 0.61 -1.0
197,450 - BACOVA_02432 0.62 -0.1
197,450 - BACOVA_02432 0.62 -1.1
197,454 + BACOVA_02432 0.62 -0.4
197,454 + BACOVA_02432 0.62 -1.0
197,454 + BACOVA_02432 0.62 +1.1
197,455 - BACOVA_02432 0.62 +0.7
197,501 - BACOVA_02432 0.67 -1.2
197,503 - BACOVA_02432 0.68 +0.5
197,526 + BACOVA_02432 0.70 +0.2
197,527 - BACOVA_02432 0.70 -2.5
197,542 - BACOVA_02432 0.72 -0.5
197,547 + BACOVA_02432 0.73 +1.0
197,547 + BACOVA_02432 0.73 +0.0
197,577 + BACOVA_02432 0.76 +0.1
197,609 + BACOVA_02432 0.79 +0.3
197,609 + BACOVA_02432 0.79 -0.9
197,610 - BACOVA_02432 0.80 -0.2
197,610 - BACOVA_02432 0.80 -0.4
197,615 + BACOVA_02432 0.80 +0.3
197,616 - BACOVA_02432 0.80 +0.5
197,629 - BACOVA_02432 0.82 -0.7
197,652 - BACOVA_02432 0.84 -0.9
197,652 - BACOVA_02432 0.84 +0.1
197,714 - -0.5
197,784 + -0.2
197,784 + -0.7
197,785 - +0.5
197,785 - -0.5
197,810 + +0.1
197,819 + +0.8
197,841 - -0.9
197,841 - +1.6
197,916 - BACOVA_02433 0.10 +0.3
197,916 - BACOVA_02433 0.10 -0.4
197,974 - BACOVA_02433 0.17 -0.9
197,990 + BACOVA_02433 0.18 -0.5
197,991 - BACOVA_02433 0.18 -0.1
198,131 - BACOVA_02433 0.34 +0.8
198,145 - BACOVA_02433 0.36 -1.9
198,151 + BACOVA_02433 0.36 -1.2
198,152 - BACOVA_02433 0.36 -1.4
198,153 + BACOVA_02433 0.36 +0.6
198,153 + BACOVA_02433 0.36 -0.2
198,178 - BACOVA_02433 0.39 +0.0
198,205 - BACOVA_02433 0.42 +0.3
198,205 - BACOVA_02433 0.42 -0.5
198,205 - BACOVA_02433 0.42 -1.1
198,210 - BACOVA_02433 0.43 -0.8
198,217 + BACOVA_02433 0.44 -0.0
198,241 - BACOVA_02433 0.46 +0.6
198,267 + BACOVA_02433 0.49 -0.4
198,268 - BACOVA_02433 0.49 +0.2
198,295 + BACOVA_02433 0.52 +0.2
198,296 - BACOVA_02433 0.52 -0.1
198,356 + BACOVA_02433 0.59 -0.8
198,391 + BACOVA_02433 0.63 +0.2
198,425 - BACOVA_02433 0.67 +1.7
198,425 - BACOVA_02433 0.67 -0.3
198,600 + BACOVA_02433 0.86 -0.7
198,606 + BACOVA_02433 0.87 +0.8
198,609 - BACOVA_02433 0.87 -1.7
198,624 + BACOVA_02433 0.89 -0.3
198,643 + +0.5
198,644 - +0.5
198,648 + -0.6
198,652 + -1.4
198,716 - -0.7
198,737 - +0.6
198,755 + +0.2
198,756 - +0.1
198,771 - -1.7
198,800 - -0.2
198,827 + +0.1
198,829 + -0.1
198,836 + -0.0
198,898 - BACOVA_02435 0.57 -0.5
198,898 - BACOVA_02435 0.57 -1.1
198,914 - BACOVA_02435 0.71 -1.4
198,915 + BACOVA_02435 0.72 -1.8
198,930 + BACOVA_02435 0.85 -0.2
198,941 + -0.4
198,961 - +0.5
198,964 - -0.5
198,969 + -0.5
198,978 - -0.7
199,012 - -0.5
199,118 - BACOVA_02434 0.19 -0.8
199,160 + BACOVA_02434 0.23 +1.3
199,160 + BACOVA_02434 0.23 -2.8
199,161 - BACOVA_02434 0.23 -0.4
199,170 + BACOVA_02434 0.24 -0.9
199,189 - BACOVA_02434 0.26 +0.7
199,201 + BACOVA_02434 0.27 -3.6
199,311 - BACOVA_02434 0.38 -0.1
199,383 + BACOVA_02434 0.45 -1.2
199,383 + BACOVA_02434 0.45 -0.5
199,383 + BACOVA_02434 0.45 +0.3
199,387 + BACOVA_02434 0.45 -0.1
199,387 + BACOVA_02434 0.45 -1.6
199,390 - BACOVA_02434 0.46 +0.6
199,425 + BACOVA_02434 0.49 -0.6
199,602 + BACOVA_02434 0.67 +0.3
199,603 - BACOVA_02434 0.67 -0.5
199,603 - BACOVA_02434 0.67 +0.2
199,671 - BACOVA_02434 0.73 -1.1

Or see this region's nucleotide sequence