Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03128

Experiment: N4 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03126 and OHPLBJKB_03127 are separated by 76 nucleotidesOHPLBJKB_03127 and OHPLBJKB_03128 are separated by 353 nucleotidesOHPLBJKB_03128 and OHPLBJKB_03129 are separated by 65 nucleotidesOHPLBJKB_03129 and OHPLBJKB_03130 are separated by 64 nucleotidesOHPLBJKB_03130 and OHPLBJKB_03131 are separated by 93 nucleotides OHPLBJKB_03126: OHPLBJKB_03126 - IS4 family transposase IS421, at 3,257,380 to 3,258,492 _03126 OHPLBJKB_03127: OHPLBJKB_03127 - hypothetical protein, at 3,258,569 to 3,258,820 _03127 OHPLBJKB_03128: OHPLBJKB_03128 - Putative glutamate--cysteine ligase 2, at 3,259,174 to 3,260,292 _03128 OHPLBJKB_03129: OHPLBJKB_03129 - hypothetical protein, at 3,260,358 to 3,260,606 _03129 OHPLBJKB_03130: OHPLBJKB_03130 - hypothetical protein, at 3,260,671 to 3,261,039 _03130 OHPLBJKB_03131: OHPLBJKB_03131 - Oxygen-insensitive NAD(P)H nitroreductase, at 3,261,133 to 3,261,786 _03131 Position (kb) 3259 3260 3261Strain fitness (log2 ratio) -1 0 1 2at 3258.520 kb on + strandat 3258.601 kb on + strand, within OHPLBJKB_03127at 3258.602 kb on - strand, within OHPLBJKB_03127at 3258.611 kb on - strand, within OHPLBJKB_03127at 3258.613 kb on + strand, within OHPLBJKB_03127at 3258.613 kb on + strand, within OHPLBJKB_03127at 3258.613 kb on + strand, within OHPLBJKB_03127at 3258.613 kb on + strand, within OHPLBJKB_03127at 3258.614 kb on - strand, within OHPLBJKB_03127at 3258.614 kb on - strand, within OHPLBJKB_03127at 3258.614 kb on - strand, within OHPLBJKB_03127at 3258.661 kb on + strand, within OHPLBJKB_03127at 3258.662 kb on - strand, within OHPLBJKB_03127at 3258.689 kb on + strand, within OHPLBJKB_03127at 3258.689 kb on + strand, within OHPLBJKB_03127at 3258.689 kb on + strand, within OHPLBJKB_03127at 3258.689 kb on + strand, within OHPLBJKB_03127at 3258.690 kb on - strand, within OHPLBJKB_03127at 3258.690 kb on - strand, within OHPLBJKB_03127at 3258.708 kb on + strand, within OHPLBJKB_03127at 3258.725 kb on + strand, within OHPLBJKB_03127at 3258.725 kb on + strand, within OHPLBJKB_03127at 3258.726 kb on - strand, within OHPLBJKB_03127at 3258.726 kb on - strand, within OHPLBJKB_03127at 3258.726 kb on - strand, within OHPLBJKB_03127at 3258.798 kb on - strandat 3258.838 kb on + strandat 3258.839 kb on - strandat 3258.898 kb on - strandat 3258.948 kb on + strandat 3258.948 kb on + strandat 3259.046 kb on + strandat 3259.138 kb on + strandat 3259.138 kb on + strandat 3259.138 kb on + strandat 3259.138 kb on + strandat 3259.139 kb on - strandat 3259.139 kb on - strandat 3259.163 kb on - strandat 3259.163 kb on - strandat 3259.173 kb on + strandat 3259.173 kb on + strandat 3259.174 kb on - strandat 3259.262 kb on + strandat 3259.263 kb on - strandat 3259.322 kb on + strand, within OHPLBJKB_03128at 3259.322 kb on + strand, within OHPLBJKB_03128at 3259.323 kb on - strand, within OHPLBJKB_03128at 3259.344 kb on + strand, within OHPLBJKB_03128at 3259.344 kb on + strand, within OHPLBJKB_03128at 3259.344 kb on + strand, within OHPLBJKB_03128at 3259.345 kb on - strand, within OHPLBJKB_03128at 3259.345 kb on - strand, within OHPLBJKB_03128at 3259.378 kb on - strand, within OHPLBJKB_03128at 3259.422 kb on - strand, within OHPLBJKB_03128at 3259.502 kb on + strand, within OHPLBJKB_03128at 3259.503 kb on - strand, within OHPLBJKB_03128at 3259.503 kb on - strand, within OHPLBJKB_03128at 3259.619 kb on - strand, within OHPLBJKB_03128at 3259.681 kb on + strand, within OHPLBJKB_03128at 3259.681 kb on + strand, within OHPLBJKB_03128at 3259.681 kb on + strand, within OHPLBJKB_03128at 3259.681 kb on + strand, within OHPLBJKB_03128at 3259.681 kb on + strand, within OHPLBJKB_03128at 3259.681 kb on + strand, within OHPLBJKB_03128at 3259.682 kb on - strand, within OHPLBJKB_03128at 3259.682 kb on - strand, within OHPLBJKB_03128at 3259.682 kb on - strand, within OHPLBJKB_03128at 3259.682 kb on - strand, within OHPLBJKB_03128at 3259.682 kb on - strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.683 kb on + strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.684 kb on - strand, within OHPLBJKB_03128at 3259.794 kb on - strand, within OHPLBJKB_03128at 3259.833 kb on + strand, within OHPLBJKB_03128at 3259.925 kb on + strand, within OHPLBJKB_03128at 3259.929 kb on + strand, within OHPLBJKB_03128at 3259.929 kb on + strand, within OHPLBJKB_03128at 3259.930 kb on - strand, within OHPLBJKB_03128at 3259.940 kb on + strand, within OHPLBJKB_03128at 3260.012 kb on - strand, within OHPLBJKB_03128at 3260.103 kb on + strand, within OHPLBJKB_03128at 3260.142 kb on + strand, within OHPLBJKB_03128at 3260.290 kb on + strandat 3260.290 kb on + strandat 3260.291 kb on - strandat 3260.343 kb on - strandat 3260.499 kb on - strand, within OHPLBJKB_03129at 3260.556 kb on + strand, within OHPLBJKB_03129at 3260.557 kb on - strand, within OHPLBJKB_03129at 3260.557 kb on - strand, within OHPLBJKB_03129at 3260.670 kb on + strandat 3260.807 kb on + strand, within OHPLBJKB_03130at 3260.871 kb on - strand, within OHPLBJKB_03130at 3260.884 kb on - strand, within OHPLBJKB_03130at 3260.884 kb on - strand, within OHPLBJKB_03130at 3260.905 kb on - strand, within OHPLBJKB_03130at 3260.927 kb on - strand, within OHPLBJKB_03130at 3260.955 kb on - strand, within OHPLBJKB_03130at 3261.050 kb on + strandat 3261.050 kb on + strandat 3261.051 kb on - strandat 3261.051 kb on - strandat 3261.071 kb on - strandat 3261.093 kb on - strandat 3261.113 kb on + strandat 3261.155 kb on + strandat 3261.171 kb on + strandat 3261.172 kb on - strandat 3261.277 kb on - strand, within OHPLBJKB_03131

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI1
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3,258,520 + -0.1
3,258,601 + OHPLBJKB_03127 0.13 +0.2
3,258,602 - OHPLBJKB_03127 0.13 -0.8
3,258,611 - OHPLBJKB_03127 0.17 +1.3
3,258,613 + OHPLBJKB_03127 0.17 -0.6
3,258,613 + OHPLBJKB_03127 0.17 +0.5
3,258,613 + OHPLBJKB_03127 0.17 +0.0
3,258,613 + OHPLBJKB_03127 0.17 +0.2
3,258,614 - OHPLBJKB_03127 0.18 -0.3
3,258,614 - OHPLBJKB_03127 0.18 +1.1
3,258,614 - OHPLBJKB_03127 0.18 +0.7
3,258,661 + OHPLBJKB_03127 0.37 -0.8
3,258,662 - OHPLBJKB_03127 0.37 -0.1
3,258,689 + OHPLBJKB_03127 0.48 +0.6
3,258,689 + OHPLBJKB_03127 0.48 -0.3
3,258,689 + OHPLBJKB_03127 0.48 +1.4
3,258,689 + OHPLBJKB_03127 0.48 +0.2
3,258,690 - OHPLBJKB_03127 0.48 +1.2
3,258,690 - OHPLBJKB_03127 0.48 -0.1
3,258,708 + OHPLBJKB_03127 0.55 +0.6
3,258,725 + OHPLBJKB_03127 0.62 +0.1
3,258,725 + OHPLBJKB_03127 0.62 +0.3
3,258,726 - OHPLBJKB_03127 0.62 -0.9
3,258,726 - OHPLBJKB_03127 0.62 +1.3
3,258,726 - OHPLBJKB_03127 0.62 +0.0
3,258,798 - +0.2
3,258,838 + +0.1
3,258,839 - -0.7
3,258,898 - -1.1
3,258,948 + -0.3
3,258,948 + +1.6
3,259,046 + -0.5
3,259,138 + +0.2
3,259,138 + -1.1
3,259,138 + +0.5
3,259,138 + +0.3
3,259,139 - -0.4
3,259,139 - -0.3
3,259,163 - -0.6
3,259,163 - +0.0
3,259,173 + +0.4
3,259,173 + +0.5
3,259,174 - -1.1
3,259,262 + +0.1
3,259,263 - -0.3
3,259,322 + OHPLBJKB_03128 0.13 +0.4
3,259,322 + OHPLBJKB_03128 0.13 +0.3
3,259,323 - OHPLBJKB_03128 0.13 -0.3
3,259,344 + OHPLBJKB_03128 0.15 +0.6
3,259,344 + OHPLBJKB_03128 0.15 -0.1
3,259,344 + OHPLBJKB_03128 0.15 +0.1
3,259,345 - OHPLBJKB_03128 0.15 +0.4
3,259,345 - OHPLBJKB_03128 0.15 -0.2
3,259,378 - OHPLBJKB_03128 0.18 +0.4
3,259,422 - OHPLBJKB_03128 0.22 +0.5
3,259,502 + OHPLBJKB_03128 0.29 +0.1
3,259,503 - OHPLBJKB_03128 0.29 +0.1
3,259,503 - OHPLBJKB_03128 0.29 -0.5
3,259,619 - OHPLBJKB_03128 0.40 -1.2
3,259,681 + OHPLBJKB_03128 0.45 +1.0
3,259,681 + OHPLBJKB_03128 0.45 +0.8
3,259,681 + OHPLBJKB_03128 0.45 +0.6
3,259,681 + OHPLBJKB_03128 0.45 +0.9
3,259,681 + OHPLBJKB_03128 0.45 -0.1
3,259,681 + OHPLBJKB_03128 0.45 +0.2
3,259,682 - OHPLBJKB_03128 0.45 +0.9
3,259,682 - OHPLBJKB_03128 0.45 -0.6
3,259,682 - OHPLBJKB_03128 0.45 -0.7
3,259,682 - OHPLBJKB_03128 0.45 +0.1
3,259,682 - OHPLBJKB_03128 0.45 +0.0
3,259,683 + OHPLBJKB_03128 0.45 -0.8
3,259,683 + OHPLBJKB_03128 0.45 -0.5
3,259,683 + OHPLBJKB_03128 0.45 -0.7
3,259,683 + OHPLBJKB_03128 0.45 +0.1
3,259,683 + OHPLBJKB_03128 0.45 -0.7
3,259,683 + OHPLBJKB_03128 0.45 +0.0
3,259,683 + OHPLBJKB_03128 0.45 -0.4
3,259,683 + OHPLBJKB_03128 0.45 -0.3
3,259,683 + OHPLBJKB_03128 0.45 +1.9
3,259,684 - OHPLBJKB_03128 0.46 -1.4
3,259,684 - OHPLBJKB_03128 0.46 -0.2
3,259,684 - OHPLBJKB_03128 0.46 +0.2
3,259,684 - OHPLBJKB_03128 0.46 -0.2
3,259,684 - OHPLBJKB_03128 0.46 -0.5
3,259,684 - OHPLBJKB_03128 0.46 +0.5
3,259,684 - OHPLBJKB_03128 0.46 -0.1
3,259,684 - OHPLBJKB_03128 0.46 +0.4
3,259,684 - OHPLBJKB_03128 0.46 +0.2
3,259,684 - OHPLBJKB_03128 0.46 +0.1
3,259,684 - OHPLBJKB_03128 0.46 -0.4
3,259,684 - OHPLBJKB_03128 0.46 +0.6
3,259,684 - OHPLBJKB_03128 0.46 -1.0
3,259,684 - OHPLBJKB_03128 0.46 -0.6
3,259,684 - OHPLBJKB_03128 0.46 +0.1
3,259,684 - OHPLBJKB_03128 0.46 -0.3
3,259,684 - OHPLBJKB_03128 0.46 +0.7
3,259,684 - OHPLBJKB_03128 0.46 +0.2
3,259,684 - OHPLBJKB_03128 0.46 +0.9
3,259,794 - OHPLBJKB_03128 0.55 +0.0
3,259,833 + OHPLBJKB_03128 0.59 -0.9
3,259,925 + OHPLBJKB_03128 0.67 +0.3
3,259,929 + OHPLBJKB_03128 0.67 +0.2
3,259,929 + OHPLBJKB_03128 0.67 +1.4
3,259,930 - OHPLBJKB_03128 0.68 +0.2
3,259,940 + OHPLBJKB_03128 0.68 -0.7
3,260,012 - OHPLBJKB_03128 0.75 -0.5
3,260,103 + OHPLBJKB_03128 0.83 -0.3
3,260,142 + OHPLBJKB_03128 0.87 +0.7
3,260,290 + -0.2
3,260,290 + +0.2
3,260,291 - -0.2
3,260,343 - -1.2
3,260,499 - OHPLBJKB_03129 0.57 -0.4
3,260,556 + OHPLBJKB_03129 0.80 +0.1
3,260,557 - OHPLBJKB_03129 0.80 -0.2
3,260,557 - OHPLBJKB_03129 0.80 +0.2
3,260,670 + -0.1
3,260,807 + OHPLBJKB_03130 0.37 -0.5
3,260,871 - OHPLBJKB_03130 0.54 -0.8
3,260,884 - OHPLBJKB_03130 0.58 +0.7
3,260,884 - OHPLBJKB_03130 0.58 -0.0
3,260,905 - OHPLBJKB_03130 0.63 +0.5
3,260,927 - OHPLBJKB_03130 0.69 -0.7
3,260,955 - OHPLBJKB_03130 0.77 -0.1
3,261,050 + +0.8
3,261,050 + -0.5
3,261,051 - -0.5
3,261,051 - -0.4
3,261,071 - -0.5
3,261,093 - +0.2
3,261,113 + +0.0
3,261,155 + -0.6
3,261,171 + -0.5
3,261,172 - +1.6
3,261,277 - OHPLBJKB_03131 0.22 -1.4

Or see this region's nucleotide sequence