Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05151 and BACOVA_05152 are separated by 34 nucleotides BACOVA_05152 and BACOVA_05153 are separated by 116 nucleotides BACOVA_05153 and BACOVA_05154 are separated by 139 nucleotides BACOVA_05154 and BACOVA_05155 are separated by 130 nucleotides
BACOVA_05151: BACOVA_05151 - RNA polymerase sigma-70 factor, at 632,308 to 632,862
_05151
BACOVA_05152: BACOVA_05152 - cyclic nucleotide-binding domain protein, at 632,897 to 633,598
_05152
BACOVA_05153: BACOVA_05153 - glutamate--ammonia ligase, catalytic domain protein, at 633,715 to 635,904
_05153
BACOVA_05154: BACOVA_05154 - hypothetical protein, at 636,044 to 636,517
_05154
BACOVA_05155: BACOVA_05155 - hypothetical protein, at 636,648 to 636,818
_05155
Position (kb) 633
634
635
636 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 632.750 kb on + strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.781 kb on - strand, within BACOVA_05151 at 632.783 kb on + strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.794 kb on + strand, within BACOVA_05151 at 632.795 kb on - strand, within BACOVA_05151 at 632.828 kb on - strand at 632.840 kb on - strand at 632.850 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.867 kb on + strand at 632.898 kb on + strand at 633.226 kb on + strand, within BACOVA_05152 at 633.260 kb on - strand, within BACOVA_05152 at 633.483 kb on + strand, within BACOVA_05152 at 633.492 kb on - strand, within BACOVA_05152 at 633.542 kb on + strand at 633.619 kb on - strand at 633.667 kb on - strand at 633.738 kb on + strand at 633.878 kb on - strand at 633.911 kb on - strand at 634.119 kb on - strand, within BACOVA_05153 at 634.183 kb on - strand, within BACOVA_05153 at 634.209 kb on + strand, within BACOVA_05153 at 634.210 kb on - strand, within BACOVA_05153 at 634.394 kb on - strand, within BACOVA_05153 at 634.765 kb on - strand, within BACOVA_05153 at 634.802 kb on + strand, within BACOVA_05153 at 635.227 kb on - strand, within BACOVA_05153 at 635.230 kb on + strand, within BACOVA_05153 at 635.243 kb on - strand, within BACOVA_05153 at 635.277 kb on + strand, within BACOVA_05153 at 635.282 kb on - strand, within BACOVA_05153 at 635.389 kb on - strand, within BACOVA_05153 at 635.431 kb on + strand, within BACOVA_05153 at 635.466 kb on - strand, within BACOVA_05153 at 635.718 kb on + strand at 635.725 kb on - strand at 635.982 kb on - strand at 636.012 kb on + strand at 636.039 kb on + strand at 636.045 kb on + strand at 636.070 kb on + strand at 636.103 kb on + strand, within BACOVA_05154 at 636.103 kb on + strand, within BACOVA_05154 at 636.106 kb on - strand, within BACOVA_05154 at 636.209 kb on - strand, within BACOVA_05154 at 636.236 kb on + strand, within BACOVA_05154 at 636.237 kb on - strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.354 kb on - strand, within BACOVA_05154 at 636.471 kb on - strand at 636.492 kb on - strand at 636.500 kb on - strand at 636.517 kb on + strand at 636.520 kb on + strand at 636.521 kb on - strand at 636.522 kb on + strand at 636.527 kb on - strand at 636.527 kb on - strand at 636.558 kb on - strand at 636.616 kb on + strand at 636.617 kb on - strand at 636.648 kb on - strand at 636.722 kb on + strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.784 kb on - strand, within BACOVA_05155 at 636.786 kb on - strand, within BACOVA_05155 at 636.806 kb on + strand at 636.807 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.812 kb on - strand at 636.812 kb on - strand at 636.813 kb on + strand at 636.813 kb on + strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.816 kb on + strand at 636.816 kb on + strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.820 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.830 kb on - strand at 636.867 kb on - strand at 636.867 kb on - strand at 636.871 kb on + strand at 636.871 kb on + strand at 636.894 kb on + strand at 636.901 kb on - strand at 636.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C) remove 632,750 + BACOVA_05151 0.80 -0.4 632,776 - BACOVA_05151 0.84 -0.5 632,776 - BACOVA_05151 0.84 -0.5 632,780 + BACOVA_05151 0.85 +1.2 632,780 + BACOVA_05151 0.85 +0.5 632,781 - BACOVA_05151 0.85 -0.7 632,783 + BACOVA_05151 0.86 +1.4 632,784 - BACOVA_05151 0.86 -0.9 632,784 - BACOVA_05151 0.86 -2.1 632,794 + BACOVA_05151 0.88 +0.5 632,795 - BACOVA_05151 0.88 -2.4 632,828 - +0.5 632,840 - -1.7 632,850 + +0.5 632,854 + +0.9 632,854 + +0.2 632,854 + +0.5 632,855 - +1.4 632,855 - +0.7 632,855 - -0.1 632,855 - -0.0 632,855 - +1.1 632,867 + +1.4 632,898 + -0.1 633,226 + BACOVA_05152 0.47 -1.4 633,260 - BACOVA_05152 0.52 +0.8 633,483 + BACOVA_05152 0.83 -0.8 633,492 - BACOVA_05152 0.85 -1.8 633,542 + -1.6 633,619 - -1.8 633,667 - -1.4 633,738 + -0.4 633,878 - -1.7 633,911 - -2.1 634,119 - BACOVA_05153 0.18 -0.8 634,183 - BACOVA_05153 0.21 -1.6 634,209 + BACOVA_05153 0.23 -2.4 634,210 - BACOVA_05153 0.23 -2.1 634,394 - BACOVA_05153 0.31 -2.4 634,765 - BACOVA_05153 0.48 -1.4 634,802 + BACOVA_05153 0.50 -0.2 635,227 - BACOVA_05153 0.69 -1.6 635,230 + BACOVA_05153 0.69 -0.6 635,243 - BACOVA_05153 0.70 -1.4 635,277 + BACOVA_05153 0.71 -1.2 635,282 - BACOVA_05153 0.72 -1.6 635,389 - BACOVA_05153 0.76 -1.0 635,431 + BACOVA_05153 0.78 +0.8 635,466 - BACOVA_05153 0.80 -1.0 635,718 + -0.8 635,725 - -1.1 635,982 - -0.0 636,012 + +0.8 636,039 + -0.9 636,045 + -0.3 636,070 + -0.8 636,103 + BACOVA_05154 0.12 +1.8 636,103 + BACOVA_05154 0.12 -1.7 636,106 - BACOVA_05154 0.13 -0.8 636,209 - BACOVA_05154 0.35 +0.8 636,236 + BACOVA_05154 0.41 -1.2 636,237 - BACOVA_05154 0.41 -0.7 636,353 + BACOVA_05154 0.65 +0.6 636,353 + BACOVA_05154 0.65 +0.1 636,354 - BACOVA_05154 0.65 +0.1 636,471 - -0.9 636,492 - -0.4 636,500 - +0.5 636,517 + -0.7 636,520 + -1.4 636,521 - +0.5 636,522 + +0.4 636,527 - -0.4 636,527 - -0.5 636,558 - -0.9 636,616 + -0.4 636,617 - +0.1 636,648 - +0.6 636,722 + BACOVA_05155 0.43 -1.5 636,723 - BACOVA_05155 0.44 -0.7 636,723 - BACOVA_05155 0.44 +0.4 636,761 - BACOVA_05155 0.66 +0.7 636,761 - BACOVA_05155 0.66 +0.6 636,784 - BACOVA_05155 0.80 -0.3 636,786 - BACOVA_05155 0.81 +1.1 636,806 + -1.0 636,807 - +0.6 636,810 - +0.2 636,810 - +0.2 636,810 - -0.6 636,812 - +0.8 636,812 - +0.7 636,813 + -1.3 636,813 + -0.3 636,814 - -0.2 636,814 - -0.5 636,814 - -0.9 636,814 - -0.0 636,816 + -0.2 636,816 + +0.1 636,817 - -0.2 636,817 - +0.1 636,817 - +0.1 636,817 - -0.5 636,820 - +0.9 636,825 - +0.3 636,825 - +0.5 636,825 - -0.6 636,827 - +0.4 636,827 - -0.4 636,827 - -0.5 636,830 - -3.9 636,867 - -0.7 636,867 - -0.2 636,871 + -0.4 636,871 + +0.1 636,894 + -0.0 636,901 - -0.7 636,901 - +0.4
Or see this region's nucleotide sequence