Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04184 and BACOVA_04185 overlap by 14 nucleotides BACOVA_04185 and BACOVA_04186 are separated by 19 nucleotides
BACOVA_04184: BACOVA_04184 - BNR/Asp-box repeat protein, at 57,225 to 58,385
_04184
BACOVA_04185: BACOVA_04185 - SusD family protein, at 58,372 to 59,826
_04185
BACOVA_04186: BACOVA_04186 - TonB-linked outer membrane protein, SusC/RagA family, at 59,846 to 63,136
_04186
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.407 kb on + strand, within BACOVA_04184 at 57.411 kb on - strand, within BACOVA_04184 at 57.416 kb on + strand, within BACOVA_04184 at 57.419 kb on + strand, within BACOVA_04184 at 57.420 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.468 kb on + strand, within BACOVA_04184 at 57.469 kb on - strand, within BACOVA_04184 at 57.474 kb on + strand, within BACOVA_04184 at 57.475 kb on - strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.480 kb on - strand, within BACOVA_04184 at 57.482 kb on + strand, within BACOVA_04184 at 57.483 kb on - strand, within BACOVA_04184 at 57.494 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.554 kb on + strand, within BACOVA_04184 at 57.557 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.700 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.723 kb on + strand, within BACOVA_04184 at 57.743 kb on + strand, within BACOVA_04184 at 57.747 kb on - strand, within BACOVA_04184 at 57.751 kb on + strand, within BACOVA_04184 at 57.752 kb on - strand, within BACOVA_04184 at 57.765 kb on + strand, within BACOVA_04184 at 57.901 kb on + strand, within BACOVA_04184 at 57.906 kb on - strand, within BACOVA_04184 at 57.907 kb on + strand, within BACOVA_04184 at 57.908 kb on - strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.998 kb on + strand, within BACOVA_04184 at 58.062 kb on + strand, within BACOVA_04184 at 58.071 kb on - strand, within BACOVA_04184 at 58.116 kb on + strand, within BACOVA_04184 at 58.117 kb on - strand, within BACOVA_04184 at 58.171 kb on - strand, within BACOVA_04184 at 58.175 kb on + strand, within BACOVA_04184 at 58.176 kb on - strand, within BACOVA_04184 at 58.178 kb on + strand, within BACOVA_04184 at 58.203 kb on + strand, within BACOVA_04184 at 58.204 kb on - strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.209 kb on - strand, within BACOVA_04184 at 58.219 kb on + strand, within BACOVA_04184 at 58.239 kb on - strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.241 kb on - strand, within BACOVA_04184 at 58.246 kb on + strand, within BACOVA_04184 at 58.247 kb on - strand, within BACOVA_04184 at 58.299 kb on - strand at 58.338 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.357 kb on - strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.359 kb on - strand at 58.359 kb on - strand at 58.413 kb on + strand at 58.414 kb on - strand at 58.417 kb on - strand at 58.417 kb on - strand at 58.447 kb on + strand at 58.459 kb on - strand at 58.461 kb on + strand at 58.471 kb on - strand at 58.471 kb on - strand at 58.503 kb on - strand at 58.503 kb on - strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.511 kb on - strand at 58.566 kb on - strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.620 kb on + strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.635 kb on + strand, within BACOVA_04185 at 58.636 kb on - strand, within BACOVA_04185 at 58.639 kb on + strand, within BACOVA_04185 at 58.666 kb on + strand, within BACOVA_04185 at 58.706 kb on + strand, within BACOVA_04185 at 58.727 kb on + strand, within BACOVA_04185 at 58.752 kb on + strand, within BACOVA_04185 at 58.767 kb on - strand, within BACOVA_04185 at 58.770 kb on + strand, within BACOVA_04185 at 58.771 kb on - strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.843 kb on - strand, within BACOVA_04185 at 58.852 kb on - strand, within BACOVA_04185 at 58.873 kb on - strand, within BACOVA_04185 at 58.890 kb on - strand, within BACOVA_04185 at 58.926 kb on + strand, within BACOVA_04185 at 58.949 kb on + strand, within BACOVA_04185 at 58.987 kb on + strand, within BACOVA_04185 at 59.014 kb on - strand, within BACOVA_04185 at 59.057 kb on - strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.079 kb on + strand, within BACOVA_04185 at 59.089 kb on - strand, within BACOVA_04185 at 59.121 kb on + strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.145 kb on + strand, within BACOVA_04185 at 59.219 kb on + strand, within BACOVA_04185 at 59.302 kb on + strand, within BACOVA_04185 at 59.303 kb on - strand, within BACOVA_04185 at 59.342 kb on - strand, within BACOVA_04185 at 59.353 kb on - strand, within BACOVA_04185 at 59.380 kb on + strand, within BACOVA_04185 at 59.381 kb on - strand, within BACOVA_04185 at 59.382 kb on + strand, within BACOVA_04185 at 59.400 kb on + strand, within BACOVA_04185 at 59.417 kb on + strand, within BACOVA_04185 at 59.418 kb on - strand, within BACOVA_04185 at 59.418 kb on - strand, within BACOVA_04185 at 59.421 kb on + strand, within BACOVA_04185 at 59.422 kb on - strand, within BACOVA_04185 at 59.438 kb on + strand, within BACOVA_04185 at 59.439 kb on - strand, within BACOVA_04185 at 59.439 kb on - strand, within BACOVA_04185 at 59.504 kb on - strand, within BACOVA_04185 at 59.512 kb on - strand, within BACOVA_04185 at 59.616 kb on + strand, within BACOVA_04185 at 59.616 kb on + strand, within BACOVA_04185 at 59.656 kb on - strand, within BACOVA_04185 at 59.668 kb on + strand, within BACOVA_04185 at 59.677 kb on - strand, within BACOVA_04185 at 59.677 kb on - strand, within BACOVA_04185 at 59.678 kb on + strand, within BACOVA_04185 at 59.679 kb on - strand, within BACOVA_04185 at 59.679 kb on - strand, within BACOVA_04185 at 59.682 kb on + strand at 59.682 kb on + strand at 59.686 kb on + strand at 59.701 kb on + strand at 59.701 kb on + strand at 59.715 kb on + strand at 59.738 kb on - strand at 59.755 kb on + strand at 59.806 kb on + strand at 59.814 kb on + strand at 59.872 kb on + strand at 59.873 kb on - strand at 59.874 kb on + strand at 59.875 kb on - strand at 59.894 kb on + strand at 59.940 kb on + strand at 59.948 kb on + strand at 59.951 kb on - strand at 59.953 kb on - strand at 59.962 kb on + strand at 59.962 kb on + strand at 59.963 kb on - strand at 59.963 kb on - strand at 59.963 kb on - strand at 59.964 kb on + strand at 60.023 kb on + strand at 60.024 kb on - strand at 60.024 kb on - strand at 60.028 kb on + strand at 60.028 kb on + strand at 60.028 kb on + strand at 60.036 kb on - strand at 60.049 kb on + strand at 60.060 kb on + strand at 60.074 kb on - strand at 60.137 kb on - strand at 60.137 kb on - strand at 60.173 kb on + strand at 60.175 kb on + strand, within BACOVA_04186 at 60.177 kb on + strand, within BACOVA_04186 at 60.236 kb on + strand, within BACOVA_04186 at 60.237 kb on - strand, within BACOVA_04186 at 60.253 kb on + strand, within BACOVA_04186 at 60.269 kb on + strand, within BACOVA_04186 at 60.270 kb on - strand, within BACOVA_04186 at 60.270 kb on - strand, within BACOVA_04186 at 60.290 kb on - strand, within BACOVA_04186 at 60.293 kb on + strand, within BACOVA_04186 at 60.320 kb on + strand, within BACOVA_04186 at 60.364 kb on + strand, within BACOVA_04186 at 60.365 kb on - strand, within BACOVA_04186 at 60.371 kb on + strand, within BACOVA_04186 at 60.390 kb on + strand, within BACOVA_04186 at 60.391 kb on - strand, within BACOVA_04186 at 60.412 kb on + strand, within BACOVA_04186 at 60.413 kb on - strand, within BACOVA_04186 at 60.528 kb on + strand, within BACOVA_04186 at 60.536 kb on + strand, within BACOVA_04186 at 60.537 kb on - strand, within BACOVA_04186 at 60.540 kb on + strand, within BACOVA_04186 at 60.621 kb on + strand, within BACOVA_04186 at 60.661 kb on + strand, within BACOVA_04186 at 60.668 kb on + strand, within BACOVA_04186 at 60.678 kb on - strand, within BACOVA_04186 at 60.711 kb on - strand, within BACOVA_04186 at 60.745 kb on + strand, within BACOVA_04186 at 60.746 kb on - strand, within BACOVA_04186 at 60.746 kb on - strand, within BACOVA_04186 at 60.793 kb on + strand, within BACOVA_04186 at 60.793 kb on + strand, within BACOVA_04186 at 60.793 kb on + strand, within BACOVA_04186
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C) remove 57,407 + BACOVA_04184 0.16 +0.0 57,411 - BACOVA_04184 0.16 +1.6 57,416 + BACOVA_04184 0.16 +0.4 57,419 + BACOVA_04184 0.17 -0.9 57,420 - BACOVA_04184 0.17 -0.9 57,423 - BACOVA_04184 0.17 -1.2 57,423 - BACOVA_04184 0.17 -0.9 57,468 + BACOVA_04184 0.21 -0.9 57,469 - BACOVA_04184 0.21 -0.5 57,474 + BACOVA_04184 0.21 -0.0 57,475 - BACOVA_04184 0.22 -0.3 57,477 + BACOVA_04184 0.22 -0.2 57,477 + BACOVA_04184 0.22 -0.8 57,480 - BACOVA_04184 0.22 +0.6 57,482 + BACOVA_04184 0.22 -0.5 57,483 - BACOVA_04184 0.22 +0.1 57,494 + BACOVA_04184 0.23 +0.1 57,537 + BACOVA_04184 0.27 -0.5 57,537 + BACOVA_04184 0.27 +0.1 57,539 + BACOVA_04184 0.27 +0.0 57,539 + BACOVA_04184 0.27 -0.0 57,540 - BACOVA_04184 0.27 +0.7 57,540 - BACOVA_04184 0.27 -0.3 57,554 + BACOVA_04184 0.28 +0.3 57,557 + BACOVA_04184 0.29 -0.9 57,603 + BACOVA_04184 0.33 -0.4 57,603 + BACOVA_04184 0.33 -0.7 57,603 + BACOVA_04184 0.33 -0.5 57,700 + BACOVA_04184 0.41 -0.6 57,704 + BACOVA_04184 0.41 +0.8 57,704 + BACOVA_04184 0.41 -0.9 57,723 + BACOVA_04184 0.43 -2.0 57,743 + BACOVA_04184 0.45 +0.5 57,747 - BACOVA_04184 0.45 +0.7 57,751 + BACOVA_04184 0.45 -1.1 57,752 - BACOVA_04184 0.45 -0.8 57,765 + BACOVA_04184 0.47 +0.5 57,901 + BACOVA_04184 0.58 -0.2 57,906 - BACOVA_04184 0.59 -0.1 57,907 + BACOVA_04184 0.59 +0.4 57,908 - BACOVA_04184 0.59 +1.1 57,910 + BACOVA_04184 0.59 +0.5 57,910 + BACOVA_04184 0.59 -0.7 57,998 + BACOVA_04184 0.67 -0.7 58,062 + BACOVA_04184 0.72 +2.0 58,071 - BACOVA_04184 0.73 -0.6 58,116 + BACOVA_04184 0.77 +0.1 58,117 - BACOVA_04184 0.77 -0.1 58,171 - BACOVA_04184 0.81 -1.0 58,175 + BACOVA_04184 0.82 +1.0 58,176 - BACOVA_04184 0.82 -0.1 58,178 + BACOVA_04184 0.82 +0.2 58,203 + BACOVA_04184 0.84 -0.6 58,204 - BACOVA_04184 0.84 -0.3 58,208 + BACOVA_04184 0.85 +0.3 58,208 + BACOVA_04184 0.85 -1.1 58,209 - BACOVA_04184 0.85 +0.4 58,219 + BACOVA_04184 0.86 -1.3 58,239 - BACOVA_04184 0.87 -0.5 58,240 + BACOVA_04184 0.87 -1.0 58,240 + BACOVA_04184 0.87 +0.5 58,241 - BACOVA_04184 0.88 +0.9 58,246 + BACOVA_04184 0.88 +1.2 58,247 - BACOVA_04184 0.88 -0.3 58,299 - +0.1 58,338 + -0.3 58,356 + -0.3 58,356 + -0.4 58,357 - +0.3 58,358 + -0.0 58,358 + -0.3 58,358 + -2.0 58,359 - -0.0 58,359 - +1.1 58,413 + +0.6 58,414 - +0.5 58,417 - +1.0 58,417 - +1.1 58,447 + -0.3 58,459 - -0.1 58,461 + -0.4 58,471 - +0.0 58,471 - +1.1 58,503 - -0.9 58,503 - -1.3 58,510 + -1.1 58,510 + -0.1 58,510 + -1.1 58,511 - +0.4 58,566 - BACOVA_04185 0.13 -0.6 58,567 + BACOVA_04185 0.13 +0.3 58,567 + BACOVA_04185 0.13 +0.4 58,620 + BACOVA_04185 0.17 -2.2 58,632 - BACOVA_04185 0.18 -0.1 58,632 - BACOVA_04185 0.18 +0.5 58,632 - BACOVA_04185 0.18 +0.2 58,635 + BACOVA_04185 0.18 -0.1 58,636 - BACOVA_04185 0.18 -0.1 58,639 + BACOVA_04185 0.18 -0.3 58,666 + BACOVA_04185 0.20 -0.1 58,706 + BACOVA_04185 0.23 +0.1 58,727 + BACOVA_04185 0.24 +0.1 58,752 + BACOVA_04185 0.26 +1.1 58,767 - BACOVA_04185 0.27 +0.0 58,770 + BACOVA_04185 0.27 -0.2 58,771 - BACOVA_04185 0.27 +0.7 58,842 + BACOVA_04185 0.32 -0.3 58,842 + BACOVA_04185 0.32 -1.0 58,843 - BACOVA_04185 0.32 -0.6 58,852 - BACOVA_04185 0.33 -0.3 58,873 - BACOVA_04185 0.34 +0.1 58,890 - BACOVA_04185 0.36 -2.1 58,926 + BACOVA_04185 0.38 +0.3 58,949 + BACOVA_04185 0.40 -1.6 58,987 + BACOVA_04185 0.42 +0.6 59,014 - BACOVA_04185 0.44 +0.3 59,057 - BACOVA_04185 0.47 +0.5 59,076 + BACOVA_04185 0.48 -1.8 59,076 + BACOVA_04185 0.48 -0.5 59,077 - BACOVA_04185 0.48 +0.3 59,077 - BACOVA_04185 0.48 +0.1 59,079 + BACOVA_04185 0.49 +0.3 59,089 - BACOVA_04185 0.49 +1.1 59,121 + BACOVA_04185 0.51 -0.3 59,122 - BACOVA_04185 0.52 -0.1 59,122 - BACOVA_04185 0.52 +0.6 59,145 + BACOVA_04185 0.53 +0.2 59,219 + BACOVA_04185 0.58 -0.5 59,302 + BACOVA_04185 0.64 +0.2 59,303 - BACOVA_04185 0.64 +0.0 59,342 - BACOVA_04185 0.67 -1.3 59,353 - BACOVA_04185 0.67 -0.9 59,380 + BACOVA_04185 0.69 +0.1 59,381 - BACOVA_04185 0.69 -0.8 59,382 + BACOVA_04185 0.69 -1.4 59,400 + BACOVA_04185 0.71 -1.1 59,417 + BACOVA_04185 0.72 +0.1 59,418 - BACOVA_04185 0.72 +1.1 59,418 - BACOVA_04185 0.72 +0.9 59,421 + BACOVA_04185 0.72 -0.6 59,422 - BACOVA_04185 0.72 +2.3 59,438 + BACOVA_04185 0.73 -0.1 59,439 - BACOVA_04185 0.73 -0.7 59,439 - BACOVA_04185 0.73 -0.3 59,504 - BACOVA_04185 0.78 -2.1 59,512 - BACOVA_04185 0.78 -0.3 59,616 + BACOVA_04185 0.85 -1.1 59,616 + BACOVA_04185 0.85 -1.0 59,656 - BACOVA_04185 0.88 -0.4 59,668 + BACOVA_04185 0.89 +0.5 59,677 - BACOVA_04185 0.90 -1.9 59,677 - BACOVA_04185 0.90 -0.1 59,678 + BACOVA_04185 0.90 +0.1 59,679 - BACOVA_04185 0.90 +0.2 59,679 - BACOVA_04185 0.90 +0.3 59,682 + -0.3 59,682 + +0.4 59,686 + +0.5 59,701 + -0.7 59,701 + -1.3 59,715 + -0.3 59,738 - -0.3 59,755 + +0.1 59,806 + -0.9 59,814 + -0.9 59,872 + -0.0 59,873 - -0.6 59,874 + -0.7 59,875 - -1.0 59,894 + -0.8 59,940 + +1.0 59,948 + -0.5 59,951 - -0.0 59,953 - -0.5 59,962 + -0.4 59,962 + -1.1 59,963 - +0.1 59,963 - -0.6 59,963 - +0.1 59,964 + -0.2 60,023 + -0.4 60,024 - -0.9 60,024 - +0.1 60,028 + +0.2 60,028 + -0.4 60,028 + +0.4 60,036 - -0.1 60,049 + +1.0 60,060 + +0.0 60,074 - -1.0 60,137 - +0.9 60,137 - +1.0 60,173 + -0.6 60,175 + BACOVA_04186 0.10 -0.3 60,177 + BACOVA_04186 0.10 -0.0 60,236 + BACOVA_04186 0.12 -1.3 60,237 - BACOVA_04186 0.12 -0.3 60,253 + BACOVA_04186 0.12 -0.3 60,269 + BACOVA_04186 0.13 +0.9 60,270 - BACOVA_04186 0.13 +0.1 60,270 - BACOVA_04186 0.13 -0.3 60,290 - BACOVA_04186 0.13 -0.0 60,293 + BACOVA_04186 0.14 -0.4 60,320 + BACOVA_04186 0.14 -0.1 60,364 + BACOVA_04186 0.16 -0.1 60,365 - BACOVA_04186 0.16 -0.4 60,371 + BACOVA_04186 0.16 -0.8 60,390 + BACOVA_04186 0.17 +0.5 60,391 - BACOVA_04186 0.17 -0.4 60,412 + BACOVA_04186 0.17 +0.2 60,413 - BACOVA_04186 0.17 -1.0 60,528 + BACOVA_04186 0.21 +0.6 60,536 + BACOVA_04186 0.21 +0.3 60,537 - BACOVA_04186 0.21 -1.0 60,540 + BACOVA_04186 0.21 +0.4 60,621 + BACOVA_04186 0.24 +0.6 60,661 + BACOVA_04186 0.25 +1.0 60,668 + BACOVA_04186 0.25 -0.3 60,678 - BACOVA_04186 0.25 -1.0 60,711 - BACOVA_04186 0.26 -1.2 60,745 + BACOVA_04186 0.27 +0.5 60,746 - BACOVA_04186 0.27 +0.1 60,746 - BACOVA_04186 0.27 +0.1 60,793 + BACOVA_04186 0.29 +0.4 60,793 + BACOVA_04186 0.29 +1.4 60,793 + BACOVA_04186 0.29 -1.1
Or see this region's nucleotide sequence