Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04183

Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04182 and BACOVA_04183 are separated by 119 nucleotidesBACOVA_04183 and BACOVA_04184 overlap by 4 nucleotides BACOVA_04182: BACOVA_04182 - PKD domain protein, at 55,355 to 56,926 _04182 BACOVA_04183: BACOVA_04183 - hypothetical protein, at 57,046 to 57,228 _04183 BACOVA_04184: BACOVA_04184 - BNR/Asp-box repeat protein, at 57,225 to 58,385 _04184 Position (kb) 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 56.055 kb on + strand, within BACOVA_04182at 56.085 kb on + strand, within BACOVA_04182at 56.085 kb on + strand, within BACOVA_04182at 56.086 kb on - strand, within BACOVA_04182at 56.086 kb on - strand, within BACOVA_04182at 56.087 kb on + strand, within BACOVA_04182at 56.087 kb on + strand, within BACOVA_04182at 56.087 kb on + strand, within BACOVA_04182at 56.087 kb on + strand, within BACOVA_04182at 56.088 kb on - strand, within BACOVA_04182at 56.088 kb on - strand, within BACOVA_04182at 56.092 kb on - strand, within BACOVA_04182at 56.092 kb on - strand, within BACOVA_04182at 56.108 kb on + strand, within BACOVA_04182at 56.210 kb on - strand, within BACOVA_04182at 56.261 kb on + strand, within BACOVA_04182at 56.272 kb on + strand, within BACOVA_04182at 56.272 kb on + strand, within BACOVA_04182at 56.274 kb on + strand, within BACOVA_04182at 56.274 kb on + strand, within BACOVA_04182at 56.275 kb on - strand, within BACOVA_04182at 56.287 kb on - strand, within BACOVA_04182at 56.287 kb on - strand, within BACOVA_04182at 56.347 kb on + strand, within BACOVA_04182at 56.350 kb on - strand, within BACOVA_04182at 56.360 kb on + strand, within BACOVA_04182at 56.401 kb on + strand, within BACOVA_04182at 56.407 kb on + strand, within BACOVA_04182at 56.455 kb on + strand, within BACOVA_04182at 56.516 kb on - strand, within BACOVA_04182at 56.536 kb on + strand, within BACOVA_04182at 56.540 kb on - strand, within BACOVA_04182at 56.540 kb on - strand, within BACOVA_04182at 56.557 kb on + strand, within BACOVA_04182at 56.558 kb on - strand, within BACOVA_04182at 56.585 kb on + strand, within BACOVA_04182at 56.586 kb on - strand, within BACOVA_04182at 56.609 kb on - strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.611 kb on + strand, within BACOVA_04182at 56.640 kb on + strand, within BACOVA_04182at 56.687 kb on - strand, within BACOVA_04182at 56.691 kb on + strand, within BACOVA_04182at 56.691 kb on + strand, within BACOVA_04182at 56.712 kb on - strand, within BACOVA_04182at 56.759 kb on - strand, within BACOVA_04182at 56.774 kb on - strandat 56.774 kb on - strandat 56.777 kb on - strandat 56.843 kb on + strandat 56.879 kb on + strandat 56.879 kb on + strandat 56.879 kb on + strandat 56.883 kb on - strandat 56.935 kb on + strandat 56.936 kb on - strandat 56.936 kb on - strandat 57.047 kb on + strandat 57.048 kb on - strandat 57.075 kb on + strand, within BACOVA_04183at 57.077 kb on + strand, within BACOVA_04183at 57.077 kb on + strand, within BACOVA_04183at 57.077 kb on + strand, within BACOVA_04183at 57.077 kb on + strand, within BACOVA_04183at 57.077 kb on + strand, within BACOVA_04183at 57.079 kb on + strand, within BACOVA_04183at 57.080 kb on - strand, within BACOVA_04183at 57.080 kb on - strand, within BACOVA_04183at 57.080 kb on - strand, within BACOVA_04183at 57.086 kb on + strand, within BACOVA_04183at 57.111 kb on + strand, within BACOVA_04183at 57.128 kb on - strand, within BACOVA_04183at 57.136 kb on - strand, within BACOVA_04183at 57.136 kb on - strand, within BACOVA_04183at 57.136 kb on - strand, within BACOVA_04183at 57.139 kb on + strand, within BACOVA_04183at 57.148 kb on + strand, within BACOVA_04183at 57.154 kb on + strand, within BACOVA_04183at 57.208 kb on + strand, within BACOVA_04183at 57.212 kb on + strandat 57.212 kb on + strandat 57.212 kb on + strandat 57.213 kb on - strandat 57.213 kb on - strandat 57.296 kb on - strandat 57.297 kb on + strandat 57.298 kb on - strandat 57.298 kb on - strandat 57.300 kb on - strandat 57.358 kb on + strand, within BACOVA_04184at 57.365 kb on + strand, within BACOVA_04184at 57.366 kb on - strand, within BACOVA_04184at 57.407 kb on + strand, within BACOVA_04184at 57.411 kb on - strand, within BACOVA_04184at 57.416 kb on + strand, within BACOVA_04184at 57.419 kb on + strand, within BACOVA_04184at 57.420 kb on - strand, within BACOVA_04184at 57.423 kb on - strand, within BACOVA_04184at 57.423 kb on - strand, within BACOVA_04184at 57.468 kb on + strand, within BACOVA_04184at 57.469 kb on - strand, within BACOVA_04184at 57.474 kb on + strand, within BACOVA_04184at 57.475 kb on - strand, within BACOVA_04184at 57.477 kb on + strand, within BACOVA_04184at 57.477 kb on + strand, within BACOVA_04184at 57.480 kb on - strand, within BACOVA_04184at 57.482 kb on + strand, within BACOVA_04184at 57.483 kb on - strand, within BACOVA_04184at 57.494 kb on + strand, within BACOVA_04184at 57.537 kb on + strand, within BACOVA_04184at 57.537 kb on + strand, within BACOVA_04184at 57.539 kb on + strand, within BACOVA_04184at 57.539 kb on + strand, within BACOVA_04184at 57.540 kb on - strand, within BACOVA_04184at 57.540 kb on - strand, within BACOVA_04184at 57.554 kb on + strand, within BACOVA_04184at 57.557 kb on + strand, within BACOVA_04184at 57.603 kb on + strand, within BACOVA_04184at 57.603 kb on + strand, within BACOVA_04184at 57.603 kb on + strand, within BACOVA_04184at 57.700 kb on + strand, within BACOVA_04184at 57.704 kb on + strand, within BACOVA_04184at 57.704 kb on + strand, within BACOVA_04184at 57.723 kb on + strand, within BACOVA_04184at 57.743 kb on + strand, within BACOVA_04184at 57.747 kb on - strand, within BACOVA_04184at 57.751 kb on + strand, within BACOVA_04184at 57.752 kb on - strand, within BACOVA_04184at 57.765 kb on + strand, within BACOVA_04184at 57.901 kb on + strand, within BACOVA_04184at 57.906 kb on - strand, within BACOVA_04184at 57.907 kb on + strand, within BACOVA_04184at 57.908 kb on - strand, within BACOVA_04184at 57.910 kb on + strand, within BACOVA_04184at 57.910 kb on + strand, within BACOVA_04184at 57.998 kb on + strand, within BACOVA_04184at 58.062 kb on + strand, within BACOVA_04184at 58.071 kb on - strand, within BACOVA_04184at 58.116 kb on + strand, within BACOVA_04184at 58.117 kb on - strand, within BACOVA_04184at 58.171 kb on - strand, within BACOVA_04184at 58.175 kb on + strand, within BACOVA_04184at 58.176 kb on - strand, within BACOVA_04184at 58.178 kb on + strand, within BACOVA_04184at 58.203 kb on + strand, within BACOVA_04184at 58.204 kb on - strand, within BACOVA_04184at 58.208 kb on + strand, within BACOVA_04184at 58.208 kb on + strand, within BACOVA_04184at 58.209 kb on - strand, within BACOVA_04184at 58.219 kb on + strand, within BACOVA_04184

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C)
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56,055 + BACOVA_04182 0.45 +0.1
56,085 + BACOVA_04182 0.46 +0.7
56,085 + BACOVA_04182 0.46 -0.1
56,086 - BACOVA_04182 0.47 +1.1
56,086 - BACOVA_04182 0.47 -0.7
56,087 + BACOVA_04182 0.47 -0.3
56,087 + BACOVA_04182 0.47 -0.1
56,087 + BACOVA_04182 0.47 -0.4
56,087 + BACOVA_04182 0.47 -0.1
56,088 - BACOVA_04182 0.47 +0.8
56,088 - BACOVA_04182 0.47 -0.2
56,092 - BACOVA_04182 0.47 -1.7
56,092 - BACOVA_04182 0.47 +1.2
56,108 + BACOVA_04182 0.48 -0.0
56,210 - BACOVA_04182 0.54 -1.8
56,261 + BACOVA_04182 0.58 -0.2
56,272 + BACOVA_04182 0.58 -0.8
56,272 + BACOVA_04182 0.58 -1.7
56,274 + BACOVA_04182 0.58 +0.2
56,274 + BACOVA_04182 0.58 -1.0
56,275 - BACOVA_04182 0.59 -0.0
56,287 - BACOVA_04182 0.59 -0.6
56,287 - BACOVA_04182 0.59 +0.4
56,347 + BACOVA_04182 0.63 -1.0
56,350 - BACOVA_04182 0.63 -1.9
56,360 + BACOVA_04182 0.64 +0.1
56,401 + BACOVA_04182 0.67 +0.0
56,407 + BACOVA_04182 0.67 +0.4
56,455 + BACOVA_04182 0.70 -0.6
56,516 - BACOVA_04182 0.74 +0.3
56,536 + BACOVA_04182 0.75 +0.4
56,540 - BACOVA_04182 0.75 -0.9
56,540 - BACOVA_04182 0.75 -0.2
56,557 + BACOVA_04182 0.76 -0.1
56,558 - BACOVA_04182 0.77 -0.3
56,585 + BACOVA_04182 0.78 -0.5
56,586 - BACOVA_04182 0.78 +0.5
56,609 - BACOVA_04182 0.80 -0.0
56,611 + BACOVA_04182 0.80 +0.1
56,611 + BACOVA_04182 0.80 +0.3
56,611 + BACOVA_04182 0.80 +0.6
56,611 + BACOVA_04182 0.80 -0.8
56,611 + BACOVA_04182 0.80 -0.7
56,611 + BACOVA_04182 0.80 -1.9
56,611 + BACOVA_04182 0.80 +0.3
56,611 + BACOVA_04182 0.80 +0.0
56,640 + BACOVA_04182 0.82 +0.1
56,687 - BACOVA_04182 0.85 +0.6
56,691 + BACOVA_04182 0.85 +0.5
56,691 + BACOVA_04182 0.85 -0.6
56,712 - BACOVA_04182 0.86 +0.6
56,759 - BACOVA_04182 0.89 -0.0
56,774 - +0.3
56,774 - -1.0
56,777 - +0.6
56,843 + -1.2
56,879 + -0.2
56,879 + +0.5
56,879 + +0.6
56,883 - -1.1
56,935 + +1.2
56,936 - +0.9
56,936 - -0.4
57,047 + -0.2
57,048 - -0.1
57,075 + BACOVA_04183 0.16 -0.1
57,077 + BACOVA_04183 0.17 -0.2
57,077 + BACOVA_04183 0.17 -0.7
57,077 + BACOVA_04183 0.17 -0.2
57,077 + BACOVA_04183 0.17 +2.3
57,077 + BACOVA_04183 0.17 -2.5
57,079 + BACOVA_04183 0.18 +0.0
57,080 - BACOVA_04183 0.19 -0.3
57,080 - BACOVA_04183 0.19 -1.3
57,080 - BACOVA_04183 0.19 -0.6
57,086 + BACOVA_04183 0.22 -0.1
57,111 + BACOVA_04183 0.36 -0.2
57,128 - BACOVA_04183 0.45 -1.4
57,136 - BACOVA_04183 0.49 +0.5
57,136 - BACOVA_04183 0.49 +0.4
57,136 - BACOVA_04183 0.49 -0.1
57,139 + BACOVA_04183 0.51 -0.0
57,148 + BACOVA_04183 0.56 +0.1
57,154 + BACOVA_04183 0.59 -1.2
57,208 + BACOVA_04183 0.89 +0.2
57,212 + +0.0
57,212 + -0.0
57,212 + -0.2
57,213 - +0.3
57,213 - -0.7
57,296 - -1.8
57,297 + +1.0
57,298 - +1.4
57,298 - +0.0
57,300 - +0.9
57,358 + BACOVA_04184 0.11 -0.3
57,365 + BACOVA_04184 0.12 +0.2
57,366 - BACOVA_04184 0.12 -1.0
57,407 + BACOVA_04184 0.16 +0.0
57,411 - BACOVA_04184 0.16 +1.6
57,416 + BACOVA_04184 0.16 +0.4
57,419 + BACOVA_04184 0.17 -0.9
57,420 - BACOVA_04184 0.17 -0.9
57,423 - BACOVA_04184 0.17 -1.2
57,423 - BACOVA_04184 0.17 -0.9
57,468 + BACOVA_04184 0.21 -0.9
57,469 - BACOVA_04184 0.21 -0.5
57,474 + BACOVA_04184 0.21 -0.0
57,475 - BACOVA_04184 0.22 -0.3
57,477 + BACOVA_04184 0.22 -0.2
57,477 + BACOVA_04184 0.22 -0.8
57,480 - BACOVA_04184 0.22 +0.6
57,482 + BACOVA_04184 0.22 -0.5
57,483 - BACOVA_04184 0.22 +0.1
57,494 + BACOVA_04184 0.23 +0.1
57,537 + BACOVA_04184 0.27 -0.5
57,537 + BACOVA_04184 0.27 +0.1
57,539 + BACOVA_04184 0.27 +0.0
57,539 + BACOVA_04184 0.27 -0.0
57,540 - BACOVA_04184 0.27 +0.7
57,540 - BACOVA_04184 0.27 -0.3
57,554 + BACOVA_04184 0.28 +0.3
57,557 + BACOVA_04184 0.29 -0.9
57,603 + BACOVA_04184 0.33 -0.4
57,603 + BACOVA_04184 0.33 -0.7
57,603 + BACOVA_04184 0.33 -0.5
57,700 + BACOVA_04184 0.41 -0.6
57,704 + BACOVA_04184 0.41 +0.8
57,704 + BACOVA_04184 0.41 -0.9
57,723 + BACOVA_04184 0.43 -2.0
57,743 + BACOVA_04184 0.45 +0.5
57,747 - BACOVA_04184 0.45 +0.7
57,751 + BACOVA_04184 0.45 -1.1
57,752 - BACOVA_04184 0.45 -0.8
57,765 + BACOVA_04184 0.47 +0.5
57,901 + BACOVA_04184 0.58 -0.2
57,906 - BACOVA_04184 0.59 -0.1
57,907 + BACOVA_04184 0.59 +0.4
57,908 - BACOVA_04184 0.59 +1.1
57,910 + BACOVA_04184 0.59 +0.5
57,910 + BACOVA_04184 0.59 -0.7
57,998 + BACOVA_04184 0.67 -0.7
58,062 + BACOVA_04184 0.72 +2.0
58,071 - BACOVA_04184 0.73 -0.6
58,116 + BACOVA_04184 0.77 +0.1
58,117 - BACOVA_04184 0.77 -0.1
58,171 - BACOVA_04184 0.81 -1.0
58,175 + BACOVA_04184 0.82 +1.0
58,176 - BACOVA_04184 0.82 -0.1
58,178 + BACOVA_04184 0.82 +0.2
58,203 + BACOVA_04184 0.84 -0.6
58,204 - BACOVA_04184 0.84 -0.3
58,208 + BACOVA_04184 0.85 +0.3
58,208 + BACOVA_04184 0.85 -1.1
58,209 - BACOVA_04184 0.85 +0.4
58,219 + BACOVA_04184 0.86 -1.3

Or see this region's nucleotide sequence