Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03492

Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03491 and BACOVA_03492 are separated by 216 nucleotidesBACOVA_03492 and BACOVA_03493 are separated by 9 nucleotides BACOVA_03491: BACOVA_03491 - hypothetical protein, at 247,613 to 249,346 _03491 BACOVA_03492: BACOVA_03492 - glycosyl hydrolase, family 43, at 249,563 to 250,609 _03492 BACOVA_03493: BACOVA_03493 - hypothetical protein, at 250,619 to 251,914 _03493 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2at 248.564 kb on + strand, within BACOVA_03491at 248.567 kb on + strand, within BACOVA_03491at 248.567 kb on + strand, within BACOVA_03491at 248.571 kb on - strand, within BACOVA_03491at 248.661 kb on - strand, within BACOVA_03491at 248.661 kb on - strand, within BACOVA_03491at 248.661 kb on - strand, within BACOVA_03491at 248.696 kb on - strand, within BACOVA_03491at 248.703 kb on + strand, within BACOVA_03491at 248.705 kb on + strand, within BACOVA_03491at 248.705 kb on + strand, within BACOVA_03491at 248.705 kb on + strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.732 kb on + strand, within BACOVA_03491at 248.733 kb on - strand, within BACOVA_03491at 248.733 kb on - strand, within BACOVA_03491at 248.737 kb on + strand, within BACOVA_03491at 248.738 kb on - strand, within BACOVA_03491at 248.738 kb on - strand, within BACOVA_03491at 248.745 kb on - strand, within BACOVA_03491at 248.786 kb on - strand, within BACOVA_03491at 248.837 kb on + strand, within BACOVA_03491at 248.837 kb on + strand, within BACOVA_03491at 248.839 kb on + strand, within BACOVA_03491at 248.839 kb on + strand, within BACOVA_03491at 248.840 kb on - strand, within BACOVA_03491at 248.840 kb on - strand, within BACOVA_03491at 248.895 kb on - strand, within BACOVA_03491at 248.898 kb on - strand, within BACOVA_03491at 248.916 kb on + strand, within BACOVA_03491at 248.934 kb on - strand, within BACOVA_03491at 248.934 kb on - strand, within BACOVA_03491at 249.059 kb on - strand, within BACOVA_03491at 249.059 kb on - strand, within BACOVA_03491at 249.117 kb on - strand, within BACOVA_03491at 249.117 kb on - strand, within BACOVA_03491at 249.120 kb on + strand, within BACOVA_03491at 249.153 kb on - strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.167 kb on + strand, within BACOVA_03491at 249.168 kb on - strand, within BACOVA_03491at 249.169 kb on + strand, within BACOVA_03491at 249.239 kb on + strandat 249.240 kb on - strandat 249.241 kb on + strandat 249.254 kb on + strandat 249.255 kb on - strandat 249.283 kb on + strandat 249.297 kb on + strandat 249.298 kb on - strandat 249.298 kb on - strandat 249.303 kb on + strandat 249.305 kb on + strandat 249.305 kb on + strandat 249.306 kb on - strandat 249.307 kb on + strandat 249.307 kb on + strandat 249.307 kb on + strandat 249.307 kb on + strandat 249.404 kb on - strandat 249.407 kb on - strandat 249.408 kb on + strandat 249.409 kb on - strandat 249.409 kb on - strandat 249.448 kb on + strandat 249.448 kb on + strandat 249.448 kb on + strandat 249.452 kb on - strandat 249.456 kb on + strandat 249.456 kb on + strandat 249.462 kb on + strandat 249.482 kb on + strandat 249.499 kb on - strandat 249.500 kb on + strandat 249.501 kb on - strandat 249.501 kb on - strandat 249.501 kb on - strandat 249.523 kb on + strandat 249.536 kb on - strandat 249.556 kb on + strandat 249.568 kb on + strandat 249.593 kb on - strandat 249.599 kb on - strandat 249.601 kb on - strandat 249.603 kb on + strandat 249.604 kb on - strandat 249.606 kb on + strandat 249.619 kb on + strandat 249.620 kb on - strandat 249.627 kb on + strandat 249.637 kb on - strandat 249.637 kb on - strandat 249.656 kb on + strandat 249.657 kb on - strandat 249.659 kb on - strandat 249.732 kb on + strand, within BACOVA_03492at 249.733 kb on - strand, within BACOVA_03492at 249.733 kb on - strand, within BACOVA_03492at 249.733 kb on - strand, within BACOVA_03492at 249.735 kb on - strand, within BACOVA_03492at 249.739 kb on + strand, within BACOVA_03492at 249.749 kb on + strand, within BACOVA_03492at 249.750 kb on - strand, within BACOVA_03492at 249.752 kb on + strand, within BACOVA_03492at 249.758 kb on + strand, within BACOVA_03492at 249.759 kb on - strand, within BACOVA_03492at 249.767 kb on + strand, within BACOVA_03492at 249.767 kb on + strand, within BACOVA_03492at 249.803 kb on - strand, within BACOVA_03492at 249.820 kb on + strand, within BACOVA_03492at 249.837 kb on + strand, within BACOVA_03492at 249.846 kb on - strand, within BACOVA_03492at 249.940 kb on - strand, within BACOVA_03492at 249.965 kb on - strand, within BACOVA_03492at 249.987 kb on + strand, within BACOVA_03492at 250.016 kb on + strand, within BACOVA_03492at 250.016 kb on + strand, within BACOVA_03492at 250.016 kb on + strand, within BACOVA_03492at 250.021 kb on + strand, within BACOVA_03492at 250.148 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.185 kb on - strand, within BACOVA_03492at 250.187 kb on - strand, within BACOVA_03492at 250.187 kb on - strand, within BACOVA_03492at 250.208 kb on + strand, within BACOVA_03492at 250.208 kb on + strand, within BACOVA_03492at 250.231 kb on + strand, within BACOVA_03492at 250.276 kb on + strand, within BACOVA_03492at 250.277 kb on - strand, within BACOVA_03492at 250.282 kb on + strand, within BACOVA_03492at 250.288 kb on + strand, within BACOVA_03492at 250.288 kb on + strand, within BACOVA_03492at 250.297 kb on + strand, within BACOVA_03492at 250.303 kb on - strand, within BACOVA_03492at 250.330 kb on + strand, within BACOVA_03492at 250.330 kb on + strand, within BACOVA_03492at 250.360 kb on + strand, within BACOVA_03492at 250.361 kb on - strand, within BACOVA_03492at 250.363 kb on + strand, within BACOVA_03492at 250.364 kb on - strand, within BACOVA_03492at 250.396 kb on + strand, within BACOVA_03492at 250.436 kb on - strand, within BACOVA_03492at 250.439 kb on + strand, within BACOVA_03492at 250.440 kb on - strand, within BACOVA_03492at 250.440 kb on - strand, within BACOVA_03492at 250.472 kb on + strand, within BACOVA_03492at 250.474 kb on + strand, within BACOVA_03492at 250.474 kb on + strand, within BACOVA_03492at 250.474 kb on + strand, within BACOVA_03492at 250.475 kb on - strand, within BACOVA_03492at 250.523 kb on + strandat 250.527 kb on + strandat 250.527 kb on + strandat 250.528 kb on - strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.709 kb on - strandat 250.714 kb on + strandat 250.714 kb on + strandat 250.775 kb on + strand, within BACOVA_03493at 250.776 kb on - strand, within BACOVA_03493at 250.776 kb on - strand, within BACOVA_03493at 250.776 kb on - strand, within BACOVA_03493at 250.776 kb on - strand, within BACOVA_03493at 250.776 kb on - strand, within BACOVA_03493at 250.777 kb on + strand, within BACOVA_03493at 250.787 kb on + strand, within BACOVA_03493at 250.803 kb on - strand, within BACOVA_03493at 250.809 kb on + strand, within BACOVA_03493at 250.849 kb on - strand, within BACOVA_03493at 250.891 kb on + strand, within BACOVA_03493at 250.894 kb on - strand, within BACOVA_03493at 250.909 kb on - strand, within BACOVA_03493at 250.923 kb on - strand, within BACOVA_03493at 250.924 kb on + strand, within BACOVA_03493at 250.924 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.932 kb on + strand, within BACOVA_03493at 250.961 kb on - strand, within BACOVA_03493at 251.058 kb on - strand, within BACOVA_03493at 251.079 kb on + strand, within BACOVA_03493at 251.079 kb on + strand, within BACOVA_03493at 251.080 kb on - strand, within BACOVA_03493at 251.175 kb on + strand, within BACOVA_03493at 251.175 kb on + strand, within BACOVA_03493at 251.176 kb on - strand, within BACOVA_03493at 251.195 kb on - strand, within BACOVA_03493at 251.208 kb on - strand, within BACOVA_03493at 251.219 kb on + strand, within BACOVA_03493at 251.293 kb on + strand, within BACOVA_03493at 251.335 kb on + strand, within BACOVA_03493at 251.387 kb on + strand, within BACOVA_03493at 251.387 kb on + strand, within BACOVA_03493at 251.388 kb on - strand, within BACOVA_03493at 251.434 kb on + strand, within BACOVA_03493at 251.463 kb on - strand, within BACOVA_03493at 251.465 kb on - strand, within BACOVA_03493at 251.466 kb on + strand, within BACOVA_03493at 251.466 kb on + strand, within BACOVA_03493at 251.467 kb on - strand, within BACOVA_03493at 251.467 kb on - strand, within BACOVA_03493at 251.471 kb on - strand, within BACOVA_03493at 251.471 kb on - strand, within BACOVA_03493at 251.475 kb on - strand, within BACOVA_03493at 251.553 kb on + strand, within BACOVA_03493at 251.575 kb on + strand, within BACOVA_03493at 251.608 kb on + strand, within BACOVA_03493at 251.609 kb on - strand, within BACOVA_03493

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C)
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248,564 + BACOVA_03491 0.55 -0.2
248,567 + BACOVA_03491 0.55 -0.2
248,567 + BACOVA_03491 0.55 +0.2
248,571 - BACOVA_03491 0.55 -0.0
248,661 - BACOVA_03491 0.60 -0.2
248,661 - BACOVA_03491 0.60 -0.7
248,661 - BACOVA_03491 0.60 -0.1
248,696 - BACOVA_03491 0.62 +0.5
248,703 + BACOVA_03491 0.63 -0.4
248,705 + BACOVA_03491 0.63 +0.0
248,705 + BACOVA_03491 0.63 -0.8
248,705 + BACOVA_03491 0.63 +1.0
248,706 - BACOVA_03491 0.63 -0.8
248,706 - BACOVA_03491 0.63 -0.6
248,706 - BACOVA_03491 0.63 +0.7
248,706 - BACOVA_03491 0.63 -0.1
248,732 + BACOVA_03491 0.65 +0.4
248,733 - BACOVA_03491 0.65 -1.0
248,733 - BACOVA_03491 0.65 -0.3
248,737 + BACOVA_03491 0.65 -0.2
248,738 - BACOVA_03491 0.65 -0.6
248,738 - BACOVA_03491 0.65 -0.9
248,745 - BACOVA_03491 0.65 +0.6
248,786 - BACOVA_03491 0.68 +0.8
248,837 + BACOVA_03491 0.71 +0.5
248,837 + BACOVA_03491 0.71 +0.4
248,839 + BACOVA_03491 0.71 -0.0
248,839 + BACOVA_03491 0.71 -0.7
248,840 - BACOVA_03491 0.71 -0.7
248,840 - BACOVA_03491 0.71 +1.6
248,895 - BACOVA_03491 0.74 +0.5
248,898 - BACOVA_03491 0.74 +0.3
248,916 + BACOVA_03491 0.75 -1.1
248,934 - BACOVA_03491 0.76 -0.4
248,934 - BACOVA_03491 0.76 -0.3
249,059 - BACOVA_03491 0.83 +0.5
249,059 - BACOVA_03491 0.83 +0.4
249,117 - BACOVA_03491 0.87 -0.0
249,117 - BACOVA_03491 0.87 -0.2
249,120 + BACOVA_03491 0.87 -1.6
249,153 - BACOVA_03491 0.89 -0.2
249,165 + BACOVA_03491 0.90 -1.6
249,165 + BACOVA_03491 0.90 +0.1
249,165 + BACOVA_03491 0.90 -0.4
249,165 + BACOVA_03491 0.90 -0.9
249,166 - BACOVA_03491 0.90 +0.3
249,166 - BACOVA_03491 0.90 +0.4
249,166 - BACOVA_03491 0.90 +0.4
249,166 - BACOVA_03491 0.90 +0.2
249,167 + BACOVA_03491 0.90 +0.2
249,168 - BACOVA_03491 0.90 +0.0
249,169 + BACOVA_03491 0.90 -0.2
249,239 + -0.0
249,240 - +0.9
249,241 + +0.3
249,254 + +0.6
249,255 - -0.7
249,283 + -0.2
249,297 + -0.3
249,298 - -0.6
249,298 - +1.0
249,303 + +0.1
249,305 + +0.0
249,305 + -1.0
249,306 - -1.1
249,307 + -0.3
249,307 + -0.5
249,307 + +0.0
249,307 + +1.6
249,404 - +0.0
249,407 - -0.4
249,408 + -0.7
249,409 - +0.4
249,409 - +0.3
249,448 + +0.5
249,448 + +0.4
249,448 + -0.6
249,452 - -0.1
249,456 + +1.7
249,456 + -0.6
249,462 + +0.0
249,482 + -0.7
249,499 - -0.7
249,500 + +0.3
249,501 - +0.2
249,501 - -0.5
249,501 - -0.8
249,523 + -0.3
249,536 - +0.1
249,556 + -0.6
249,568 + -1.1
249,593 - -1.7
249,599 - -0.7
249,601 - -0.7
249,603 + -0.9
249,604 - -1.1
249,606 + +0.6
249,619 + -1.1
249,620 - -0.1
249,627 + -0.3
249,637 - +0.1
249,637 - +1.5
249,656 + +0.5
249,657 - +0.3
249,659 - -0.7
249,732 + BACOVA_03492 0.16 -0.6
249,733 - BACOVA_03492 0.16 -0.7
249,733 - BACOVA_03492 0.16 -0.4
249,733 - BACOVA_03492 0.16 -0.6
249,735 - BACOVA_03492 0.16 +0.4
249,739 + BACOVA_03492 0.17 -0.9
249,749 + BACOVA_03492 0.18 -0.6
249,750 - BACOVA_03492 0.18 -0.6
249,752 + BACOVA_03492 0.18 -0.9
249,758 + BACOVA_03492 0.19 +0.1
249,759 - BACOVA_03492 0.19 +0.0
249,767 + BACOVA_03492 0.19 -2.0
249,767 + BACOVA_03492 0.19 +0.4
249,803 - BACOVA_03492 0.23 +0.3
249,820 + BACOVA_03492 0.25 -0.2
249,837 + BACOVA_03492 0.26 -0.1
249,846 - BACOVA_03492 0.27 -0.1
249,940 - BACOVA_03492 0.36 -0.3
249,965 - BACOVA_03492 0.38 -0.6
249,987 + BACOVA_03492 0.40 +0.5
250,016 + BACOVA_03492 0.43 -1.0
250,016 + BACOVA_03492 0.43 +0.7
250,016 + BACOVA_03492 0.43 +0.6
250,021 + BACOVA_03492 0.44 +0.4
250,148 + BACOVA_03492 0.56 +0.6
250,184 + BACOVA_03492 0.59 -0.2
250,184 + BACOVA_03492 0.59 -0.7
250,184 + BACOVA_03492 0.59 -1.9
250,184 + BACOVA_03492 0.59 +1.0
250,184 + BACOVA_03492 0.59 -0.1
250,185 - BACOVA_03492 0.59 -1.3
250,187 - BACOVA_03492 0.60 +0.2
250,187 - BACOVA_03492 0.60 +0.1
250,208 + BACOVA_03492 0.62 -0.1
250,208 + BACOVA_03492 0.62 -0.3
250,231 + BACOVA_03492 0.64 +0.0
250,276 + BACOVA_03492 0.68 -0.5
250,277 - BACOVA_03492 0.68 -0.7
250,282 + BACOVA_03492 0.69 -0.7
250,288 + BACOVA_03492 0.69 -1.6
250,288 + BACOVA_03492 0.69 -0.4
250,297 + BACOVA_03492 0.70 +2.3
250,303 - BACOVA_03492 0.71 +1.0
250,330 + BACOVA_03492 0.73 -0.7
250,330 + BACOVA_03492 0.73 -0.0
250,360 + BACOVA_03492 0.76 -1.2
250,361 - BACOVA_03492 0.76 +0.3
250,363 + BACOVA_03492 0.76 -1.0
250,364 - BACOVA_03492 0.77 +0.0
250,396 + BACOVA_03492 0.80 +0.3
250,436 - BACOVA_03492 0.83 -1.6
250,439 + BACOVA_03492 0.84 +1.6
250,440 - BACOVA_03492 0.84 +0.4
250,440 - BACOVA_03492 0.84 -1.0
250,472 + BACOVA_03492 0.87 -0.7
250,474 + BACOVA_03492 0.87 +0.9
250,474 + BACOVA_03492 0.87 +0.5
250,474 + BACOVA_03492 0.87 +1.4
250,475 - BACOVA_03492 0.87 +0.4
250,523 + +0.3
250,527 + +0.5
250,527 + -0.5
250,528 - -0.4
250,560 + -0.3
250,560 + -0.7
250,709 - +0.0
250,714 + -0.2
250,714 + +0.4
250,775 + BACOVA_03493 0.12 +0.6
250,776 - BACOVA_03493 0.12 +0.2
250,776 - BACOVA_03493 0.12 -1.6
250,776 - BACOVA_03493 0.12 +0.2
250,776 - BACOVA_03493 0.12 -0.1
250,776 - BACOVA_03493 0.12 -0.7
250,777 + BACOVA_03493 0.12 -0.3
250,787 + BACOVA_03493 0.13 -0.2
250,803 - BACOVA_03493 0.14 +0.0
250,809 + BACOVA_03493 0.15 +0.2
250,849 - BACOVA_03493 0.18 +0.1
250,891 + BACOVA_03493 0.21 +0.3
250,894 - BACOVA_03493 0.21 -0.4
250,909 - BACOVA_03493 0.22 +0.0
250,923 - BACOVA_03493 0.23 +0.8
250,924 + BACOVA_03493 0.24 -0.7
250,924 + BACOVA_03493 0.24 -0.9
250,926 + BACOVA_03493 0.24 +0.4
250,926 + BACOVA_03493 0.24 +1.0
250,926 + BACOVA_03493 0.24 +0.0
250,926 + BACOVA_03493 0.24 +0.2
250,927 - BACOVA_03493 0.24 -0.2
250,927 - BACOVA_03493 0.24 +0.0
250,927 - BACOVA_03493 0.24 +0.9
250,927 - BACOVA_03493 0.24 -0.2
250,932 + BACOVA_03493 0.24 -0.5
250,961 - BACOVA_03493 0.26 +0.7
251,058 - BACOVA_03493 0.34 -0.8
251,079 + BACOVA_03493 0.35 -0.2
251,079 + BACOVA_03493 0.35 -1.2
251,080 - BACOVA_03493 0.36 +0.4
251,175 + BACOVA_03493 0.43 -0.1
251,175 + BACOVA_03493 0.43 +0.1
251,176 - BACOVA_03493 0.43 -0.7
251,195 - BACOVA_03493 0.44 +1.0
251,208 - BACOVA_03493 0.45 +0.0
251,219 + BACOVA_03493 0.46 -0.9
251,293 + BACOVA_03493 0.52 -1.2
251,335 + BACOVA_03493 0.55 -1.0
251,387 + BACOVA_03493 0.59 -1.1
251,387 + BACOVA_03493 0.59 +0.0
251,388 - BACOVA_03493 0.59 -1.4
251,434 + BACOVA_03493 0.63 -0.5
251,463 - BACOVA_03493 0.65 +0.2
251,465 - BACOVA_03493 0.65 -1.4
251,466 + BACOVA_03493 0.65 +0.2
251,466 + BACOVA_03493 0.65 -0.3
251,467 - BACOVA_03493 0.65 -0.1
251,467 - BACOVA_03493 0.65 +0.4
251,471 - BACOVA_03493 0.66 +1.4
251,471 - BACOVA_03493 0.66 -0.5
251,475 - BACOVA_03493 0.66 -1.0
251,553 + BACOVA_03493 0.72 +0.6
251,575 + BACOVA_03493 0.74 -0.3
251,608 + BACOVA_03493 0.76 +0.3
251,609 - BACOVA_03493 0.76 +0.5

Or see this region's nucleotide sequence