Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05201 and BACOVA_05202 are separated by 99 nucleotides BACOVA_05202 and BACOVA_05203 overlap by 8 nucleotides BACOVA_05203 and BACOVA_05204 are separated by 103 nucleotides
BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976
_05201
BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195
_05202
BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541
_05203
BACOVA_05204: BACOVA_05204 - 23S rRNA m2A2503 methyltransferase, at 706,645 to 707,679
_05204
Position (kb) 703
704
705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 702.507 kb on + strand, within BACOVA_05201 at 702.829 kb on - strand at 702.933 kb on - strand at 702.982 kb on + strand at 702.983 kb on - strand at 702.983 kb on - strand at 702.992 kb on + strand at 702.993 kb on - strand at 702.996 kb on + strand at 702.996 kb on + strand at 703.000 kb on - strand at 703.010 kb on + strand at 703.011 kb on - strand at 703.029 kb on + strand at 703.059 kb on + strand at 703.139 kb on + strand, within BACOVA_05202 at 703.140 kb on - strand, within BACOVA_05202 at 703.167 kb on + strand, within BACOVA_05202 at 703.182 kb on + strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.185 kb on - strand at 703.187 kb on - strand at 703.194 kb on - strand at 703.295 kb on - strand at 703.295 kb on - strand at 703.434 kb on - strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.458 kb on - strand at 703.458 kb on - strand at 703.492 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.530 kb on + strand, within BACOVA_05203 at 703.541 kb on - strand, within BACOVA_05203 at 703.598 kb on - strand, within BACOVA_05203 at 703.618 kb on + strand, within BACOVA_05203 at 703.627 kb on - strand, within BACOVA_05203 at 703.632 kb on + strand, within BACOVA_05203 at 703.636 kb on + strand, within BACOVA_05203 at 703.743 kb on + strand, within BACOVA_05203 at 703.767 kb on - strand, within BACOVA_05203 at 703.819 kb on + strand, within BACOVA_05203 at 703.835 kb on + strand, within BACOVA_05203 at 703.895 kb on - strand, within BACOVA_05203 at 704.025 kb on - strand, within BACOVA_05203 at 704.039 kb on + strand, within BACOVA_05203 at 704.040 kb on - strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.064 kb on - strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.102 kb on - strand, within BACOVA_05203 at 704.364 kb on + strand, within BACOVA_05203 at 704.398 kb on - strand, within BACOVA_05203 at 704.442 kb on - strand, within BACOVA_05203 at 704.577 kb on + strand, within BACOVA_05203 at 704.586 kb on - strand, within BACOVA_05203 at 704.590 kb on - strand, within BACOVA_05203 at 704.668 kb on + strand, within BACOVA_05203 at 704.700 kb on + strand, within BACOVA_05203 at 704.718 kb on + strand, within BACOVA_05203 at 704.719 kb on - strand, within BACOVA_05203 at 704.720 kb on + strand, within BACOVA_05203 at 704.721 kb on - strand, within BACOVA_05203 at 704.721 kb on - strand, within BACOVA_05203 at 704.761 kb on - strand, within BACOVA_05203 at 704.852 kb on + strand, within BACOVA_05203 at 704.885 kb on + strand, within BACOVA_05203 at 704.885 kb on + strand, within BACOVA_05203 at 704.977 kb on + strand, within BACOVA_05203 at 704.995 kb on - strand, within BACOVA_05203 at 705.017 kb on + strand, within BACOVA_05203 at 705.017 kb on + strand, within BACOVA_05203 at 705.017 kb on + strand, within BACOVA_05203 at 705.018 kb on - strand, within BACOVA_05203 at 705.019 kb on + strand, within BACOVA_05203 at 705.019 kb on + strand, within BACOVA_05203 at 705.102 kb on - strand, within BACOVA_05203 at 705.106 kb on - strand, within BACOVA_05203 at 705.158 kb on + strand, within BACOVA_05203 at 705.159 kb on - strand, within BACOVA_05203 at 705.159 kb on - strand, within BACOVA_05203 at 705.172 kb on - strand, within BACOVA_05203 at 705.191 kb on + strand, within BACOVA_05203 at 705.191 kb on + strand, within BACOVA_05203 at 705.191 kb on + strand, within BACOVA_05203 at 705.192 kb on - strand, within BACOVA_05203 at 705.194 kb on - strand, within BACOVA_05203 at 705.374 kb on + strand, within BACOVA_05203 at 705.375 kb on - strand, within BACOVA_05203 at 705.631 kb on - strand, within BACOVA_05203 at 705.633 kb on + strand, within BACOVA_05203 at 705.636 kb on + strand, within BACOVA_05203 at 705.637 kb on - strand, within BACOVA_05203 at 705.637 kb on - strand, within BACOVA_05203 at 705.648 kb on + strand, within BACOVA_05203 at 705.648 kb on + strand, within BACOVA_05203 at 705.648 kb on + strand, within BACOVA_05203 at 705.688 kb on - strand, within BACOVA_05203 at 705.744 kb on + strand, within BACOVA_05203 at 705.765 kb on + strand, within BACOVA_05203 at 705.765 kb on + strand, within BACOVA_05203 at 705.766 kb on - strand, within BACOVA_05203 at 705.767 kb on + strand, within BACOVA_05203 at 705.768 kb on - strand, within BACOVA_05203 at 705.892 kb on - strand, within BACOVA_05203 at 705.950 kb on - strand, within BACOVA_05203 at 705.997 kb on - strand, within BACOVA_05203 at 705.999 kb on + strand, within BACOVA_05203 at 705.999 kb on + strand, within BACOVA_05203 at 706.000 kb on - strand, within BACOVA_05203 at 706.000 kb on - strand, within BACOVA_05203 at 706.000 kb on - strand, within BACOVA_05203 at 706.004 kb on - strand, within BACOVA_05203 at 706.060 kb on + strand, within BACOVA_05203 at 706.061 kb on - strand, within BACOVA_05203 at 706.092 kb on + strand, within BACOVA_05203 at 706.092 kb on + strand, within BACOVA_05203 at 706.155 kb on - strand, within BACOVA_05203 at 706.170 kb on + strand, within BACOVA_05203 at 706.171 kb on - strand, within BACOVA_05203 at 706.178 kb on + strand, within BACOVA_05203 at 706.186 kb on - strand, within BACOVA_05203 at 706.242 kb on - strand at 706.258 kb on + strand at 706.259 kb on - strand at 706.260 kb on + strand at 706.260 kb on + strand at 706.281 kb on + strand at 706.282 kb on - strand at 706.300 kb on - strand at 706.350 kb on + strand at 706.351 kb on - strand at 706.374 kb on - strand at 706.458 kb on + strand at 706.459 kb on - strand at 706.518 kb on + strand at 706.518 kb on + strand at 706.518 kb on + strand at 706.520 kb on + strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.573 kb on + strand at 706.601 kb on + strand at 706.623 kb on + strand at 706.623 kb on + strand at 706.710 kb on + strand at 706.710 kb on + strand at 706.779 kb on + strand, within BACOVA_05204 at 706.868 kb on + strand, within BACOVA_05204 at 706.885 kb on + strand, within BACOVA_05204 at 706.893 kb on + strand, within BACOVA_05204 at 706.893 kb on + strand, within BACOVA_05204 at 706.893 kb on + strand, within BACOVA_05204 at 706.927 kb on + strand, within BACOVA_05204 at 707.020 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.051 kb on + strand, within BACOVA_05204 at 707.051 kb on + strand, within BACOVA_05204 at 707.051 kb on + strand, within BACOVA_05204 at 707.091 kb on + strand, within BACOVA_05204 at 707.099 kb on + strand, within BACOVA_05204 at 707.099 kb on + strand, within BACOVA_05204 at 707.099 kb on + strand, within BACOVA_05204 at 707.379 kb on + strand, within BACOVA_05204
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C) remove 702,507 + BACOVA_05201 0.78 -0.8 702,829 - -0.8 702,933 - -2.2 702,982 + -0.6 702,983 - -2.9 702,983 - -1.3 702,992 + -0.9 702,993 - -0.6 702,996 + -0.6 702,996 + +0.7 703,000 - -2.3 703,010 + +1.1 703,011 - +0.7 703,029 + +0.5 703,059 + +0.8 703,139 + BACOVA_05202 0.53 -0.7 703,140 - BACOVA_05202 0.53 -0.1 703,167 + BACOVA_05202 0.76 -0.2 703,182 + BACOVA_05202 0.88 -0.4 703,183 - BACOVA_05202 0.89 -0.8 703,183 - BACOVA_05202 0.89 -1.7 703,185 - -1.0 703,187 - -1.7 703,194 - -0.2 703,295 - -2.0 703,295 - -2.2 703,434 - +1.0 703,457 + -0.2 703,457 + -0.4 703,457 + +0.2 703,457 + +1.4 703,457 + +0.4 703,458 - -0.1 703,458 - +0.7 703,492 - -1.3 703,502 - +0.2 703,502 - +0.4 703,502 - +1.7 703,530 + BACOVA_05203 0.10 +0.4 703,541 - BACOVA_05203 0.11 +0.3 703,598 - BACOVA_05203 0.12 -1.0 703,618 + BACOVA_05203 0.13 -0.7 703,627 - BACOVA_05203 0.13 +1.1 703,632 + BACOVA_05203 0.13 -1.2 703,636 + BACOVA_05203 0.13 -0.7 703,743 + BACOVA_05203 0.17 +0.7 703,767 - BACOVA_05203 0.17 -0.1 703,819 + BACOVA_05203 0.19 -0.4 703,835 + BACOVA_05203 0.19 +0.7 703,895 - BACOVA_05203 0.21 +0.5 704,025 - BACOVA_05203 0.25 -0.3 704,039 + BACOVA_05203 0.25 -0.3 704,040 - BACOVA_05203 0.25 +0.6 704,043 + BACOVA_05203 0.25 +0.1 704,043 + BACOVA_05203 0.25 +1.1 704,063 + BACOVA_05203 0.26 +0.5 704,063 + BACOVA_05203 0.26 -1.7 704,064 - BACOVA_05203 0.26 -0.9 704,101 + BACOVA_05203 0.27 -1.3 704,101 + BACOVA_05203 0.27 -0.6 704,102 - BACOVA_05203 0.27 +0.1 704,364 + BACOVA_05203 0.35 -0.7 704,398 - BACOVA_05203 0.36 -0.5 704,442 - BACOVA_05203 0.37 +0.8 704,577 + BACOVA_05203 0.41 +2.0 704,586 - BACOVA_05203 0.42 +0.2 704,590 - BACOVA_05203 0.42 -2.1 704,668 + BACOVA_05203 0.44 +0.6 704,700 + BACOVA_05203 0.45 +0.3 704,718 + BACOVA_05203 0.46 +0.8 704,719 - BACOVA_05203 0.46 -0.6 704,720 + BACOVA_05203 0.46 -0.2 704,721 - BACOVA_05203 0.46 -0.5 704,721 - BACOVA_05203 0.46 +2.3 704,761 - BACOVA_05203 0.47 +0.4 704,852 + BACOVA_05203 0.50 +0.8 704,885 + BACOVA_05203 0.51 +0.9 704,885 + BACOVA_05203 0.51 +2.6 704,977 + BACOVA_05203 0.53 -0.6 704,995 - BACOVA_05203 0.54 +0.2 705,017 + BACOVA_05203 0.55 -2.1 705,017 + BACOVA_05203 0.55 +0.3 705,017 + BACOVA_05203 0.55 -0.5 705,018 - BACOVA_05203 0.55 -0.1 705,019 + BACOVA_05203 0.55 -0.4 705,019 + BACOVA_05203 0.55 -0.6 705,102 - BACOVA_05203 0.57 -0.1 705,106 - BACOVA_05203 0.57 -0.5 705,158 + BACOVA_05203 0.59 -0.3 705,159 - BACOVA_05203 0.59 -0.8 705,159 - BACOVA_05203 0.59 +0.5 705,172 - BACOVA_05203 0.59 -0.0 705,191 + BACOVA_05203 0.60 +0.5 705,191 + BACOVA_05203 0.60 -1.5 705,191 + BACOVA_05203 0.60 -2.0 705,192 - BACOVA_05203 0.60 +0.2 705,194 - BACOVA_05203 0.60 -0.1 705,374 + BACOVA_05203 0.65 -0.5 705,375 - BACOVA_05203 0.65 +0.7 705,631 - BACOVA_05203 0.73 -0.4 705,633 + BACOVA_05203 0.73 +1.0 705,636 + BACOVA_05203 0.73 -1.2 705,637 - BACOVA_05203 0.73 +0.8 705,637 - BACOVA_05203 0.73 -1.0 705,648 + BACOVA_05203 0.73 +0.3 705,648 + BACOVA_05203 0.73 +0.4 705,648 + BACOVA_05203 0.73 -3.6 705,688 - BACOVA_05203 0.75 +1.0 705,744 + BACOVA_05203 0.76 +0.8 705,765 + BACOVA_05203 0.77 -0.1 705,765 + BACOVA_05203 0.77 -1.4 705,766 - BACOVA_05203 0.77 +0.2 705,767 + BACOVA_05203 0.77 -0.8 705,768 - BACOVA_05203 0.77 +0.2 705,892 - BACOVA_05203 0.81 +1.3 705,950 - BACOVA_05203 0.82 +0.4 705,997 - BACOVA_05203 0.84 -0.6 705,999 + BACOVA_05203 0.84 +0.3 705,999 + BACOVA_05203 0.84 -0.4 706,000 - BACOVA_05203 0.84 +0.7 706,000 - BACOVA_05203 0.84 -1.1 706,000 - BACOVA_05203 0.84 +1.2 706,004 - BACOVA_05203 0.84 +0.1 706,060 + BACOVA_05203 0.86 -0.3 706,061 - BACOVA_05203 0.86 -0.8 706,092 + BACOVA_05203 0.87 -0.1 706,092 + BACOVA_05203 0.87 +0.3 706,155 - BACOVA_05203 0.88 -0.3 706,170 + BACOVA_05203 0.89 -0.9 706,171 - BACOVA_05203 0.89 -1.3 706,178 + BACOVA_05203 0.89 +0.4 706,186 - BACOVA_05203 0.89 +0.7 706,242 - -1.7 706,258 + +0.7 706,259 - -0.2 706,260 + -0.6 706,260 + -0.3 706,281 + +0.8 706,282 - -0.4 706,300 - -1.7 706,350 + +1.6 706,351 - +1.1 706,374 - -1.0 706,458 + +1.0 706,459 - -0.0 706,518 + +0.5 706,518 + -0.5 706,518 + +0.1 706,520 + +0.2 706,551 - +1.3 706,551 - -0.2 706,573 + +1.0 706,601 + +1.3 706,623 + +0.8 706,623 + -0.0 706,710 + -1.5 706,710 + +0.1 706,779 + BACOVA_05204 0.13 -0.5 706,868 + BACOVA_05204 0.22 -1.1 706,885 + BACOVA_05204 0.23 -1.0 706,893 + BACOVA_05204 0.24 +0.3 706,893 + BACOVA_05204 0.24 +0.1 706,893 + BACOVA_05204 0.24 -2.1 706,927 + BACOVA_05204 0.27 +0.4 707,020 + BACOVA_05204 0.36 +0.8 707,022 + BACOVA_05204 0.36 -0.9 707,022 + BACOVA_05204 0.36 +0.4 707,022 + BACOVA_05204 0.36 -0.2 707,022 + BACOVA_05204 0.36 -0.0 707,051 + BACOVA_05204 0.39 -1.1 707,051 + BACOVA_05204 0.39 +0.1 707,051 + BACOVA_05204 0.39 -0.2 707,091 + BACOVA_05204 0.43 -0.5 707,099 + BACOVA_05204 0.44 -0.6 707,099 + BACOVA_05204 0.44 -0.2 707,099 + BACOVA_05204 0.44 -1.2 707,379 + BACOVA_05204 0.71 -1.0
Or see this region's nucleotide sequence