Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05201 and BACOVA_05202 are separated by 99 nucleotides BACOVA_05202 and BACOVA_05203 overlap by 8 nucleotides
BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976
_05201
BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195
_05202
BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541
_05203
Position (kb) 703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 702.507 kb on + strand, within BACOVA_05201 at 702.829 kb on - strand at 702.933 kb on - strand at 702.982 kb on + strand at 702.983 kb on - strand at 702.983 kb on - strand at 702.992 kb on + strand at 702.993 kb on - strand at 702.996 kb on + strand at 702.996 kb on + strand at 703.000 kb on - strand at 703.010 kb on + strand at 703.011 kb on - strand at 703.029 kb on + strand at 703.059 kb on + strand at 703.139 kb on + strand, within BACOVA_05202 at 703.140 kb on - strand, within BACOVA_05202 at 703.167 kb on + strand, within BACOVA_05202 at 703.182 kb on + strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.185 kb on - strand at 703.187 kb on - strand at 703.194 kb on - strand at 703.295 kb on - strand at 703.295 kb on - strand at 703.434 kb on - strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.458 kb on - strand at 703.458 kb on - strand at 703.492 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.530 kb on + strand, within BACOVA_05203 at 703.541 kb on - strand, within BACOVA_05203 at 703.598 kb on - strand, within BACOVA_05203 at 703.618 kb on + strand, within BACOVA_05203 at 703.627 kb on - strand, within BACOVA_05203 at 703.632 kb on + strand, within BACOVA_05203 at 703.636 kb on + strand, within BACOVA_05203 at 703.743 kb on + strand, within BACOVA_05203 at 703.767 kb on - strand, within BACOVA_05203 at 703.819 kb on + strand, within BACOVA_05203 at 703.835 kb on + strand, within BACOVA_05203 at 703.895 kb on - strand, within BACOVA_05203 at 704.025 kb on - strand, within BACOVA_05203 at 704.039 kb on + strand, within BACOVA_05203 at 704.040 kb on - strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.064 kb on - strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.102 kb on - strand, within BACOVA_05203
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C) remove 702,507 + BACOVA_05201 0.78 -0.8 702,829 - -0.8 702,933 - -2.2 702,982 + -0.6 702,983 - -2.9 702,983 - -1.3 702,992 + -0.9 702,993 - -0.6 702,996 + -0.6 702,996 + +0.7 703,000 - -2.3 703,010 + +1.1 703,011 - +0.7 703,029 + +0.5 703,059 + +0.8 703,139 + BACOVA_05202 0.53 -0.7 703,140 - BACOVA_05202 0.53 -0.1 703,167 + BACOVA_05202 0.76 -0.2 703,182 + BACOVA_05202 0.88 -0.4 703,183 - BACOVA_05202 0.89 -0.8 703,183 - BACOVA_05202 0.89 -1.7 703,185 - -1.0 703,187 - -1.7 703,194 - -0.2 703,295 - -2.0 703,295 - -2.2 703,434 - +1.0 703,457 + -0.2 703,457 + -0.4 703,457 + +0.2 703,457 + +1.4 703,457 + +0.4 703,458 - -0.1 703,458 - +0.7 703,492 - -1.3 703,502 - +0.2 703,502 - +0.4 703,502 - +1.7 703,530 + BACOVA_05203 0.10 +0.4 703,541 - BACOVA_05203 0.11 +0.3 703,598 - BACOVA_05203 0.12 -1.0 703,618 + BACOVA_05203 0.13 -0.7 703,627 - BACOVA_05203 0.13 +1.1 703,632 + BACOVA_05203 0.13 -1.2 703,636 + BACOVA_05203 0.13 -0.7 703,743 + BACOVA_05203 0.17 +0.7 703,767 - BACOVA_05203 0.17 -0.1 703,819 + BACOVA_05203 0.19 -0.4 703,835 + BACOVA_05203 0.19 +0.7 703,895 - BACOVA_05203 0.21 +0.5 704,025 - BACOVA_05203 0.25 -0.3 704,039 + BACOVA_05203 0.25 -0.3 704,040 - BACOVA_05203 0.25 +0.6 704,043 + BACOVA_05203 0.25 +0.1 704,043 + BACOVA_05203 0.25 +1.1 704,063 + BACOVA_05203 0.26 +0.5 704,063 + BACOVA_05203 0.26 -1.7 704,064 - BACOVA_05203 0.26 -0.9 704,101 + BACOVA_05203 0.27 -1.3 704,101 + BACOVA_05203 0.27 -0.6 704,102 - BACOVA_05203 0.27 +0.1
Or see this region's nucleotide sequence