Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04446

Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04443 and BACOVA_04444 are separated by 123 nucleotidesBACOVA_04444 and BACOVA_04445 are separated by 275 nucleotidesBACOVA_04445 and BACOVA_04446 are separated by 16 nucleotidesBACOVA_04446 and BACOVA_04447 are separated by 260 nucleotides BACOVA_04443: BACOVA_04443 - hypothetical protein, at 356,790 to 357,221 _04443 BACOVA_04444: BACOVA_04444 - hypothetical protein, at 357,345 to 357,512 _04444 BACOVA_04445: BACOVA_04445 - hypothetical protein, at 357,788 to 357,913 _04445 BACOVA_04446: BACOVA_04446 - hypothetical protein, at 357,930 to 358,055 _04446 BACOVA_04447: BACOVA_04447 - efflux transporter, RND family, MFP subunit, at 358,316 to 359,371 _04447 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1at 356.960 kb on + strand, within BACOVA_04443at 356.971 kb on - strand, within BACOVA_04443at 356.972 kb on + strand, within BACOVA_04443at 356.978 kb on + strand, within BACOVA_04443at 356.998 kb on + strand, within BACOVA_04443at 356.998 kb on + strand, within BACOVA_04443at 357.024 kb on + strand, within BACOVA_04443at 357.024 kb on + strand, within BACOVA_04443at 357.025 kb on - strand, within BACOVA_04443at 357.035 kb on + strand, within BACOVA_04443at 357.035 kb on + strand, within BACOVA_04443at 357.077 kb on - strand, within BACOVA_04443at 357.077 kb on - strand, within BACOVA_04443at 357.088 kb on + strand, within BACOVA_04443at 357.089 kb on - strand, within BACOVA_04443at 357.098 kb on - strand, within BACOVA_04443at 357.164 kb on + strand, within BACOVA_04443at 357.172 kb on + strand, within BACOVA_04443at 357.172 kb on + strand, within BACOVA_04443at 357.172 kb on + strand, within BACOVA_04443at 357.223 kb on + strandat 357.223 kb on + strandat 357.227 kb on + strandat 357.261 kb on + strandat 357.270 kb on - strandat 357.274 kb on + strandat 357.275 kb on - strandat 357.285 kb on + strandat 357.385 kb on - strand, within BACOVA_04444at 357.455 kb on - strand, within BACOVA_04444at 357.516 kb on - strandat 357.524 kb on + strandat 357.681 kb on - strandat 357.681 kb on - strandat 357.780 kb on - strandat 357.977 kb on - strand, within BACOVA_04446at 357.977 kb on - strand, within BACOVA_04446at 358.036 kb on - strand, within BACOVA_04446at 358.063 kb on - strandat 358.074 kb on - strandat 358.083 kb on - strandat 358.083 kb on - strandat 358.087 kb on + strandat 358.088 kb on - strandat 358.090 kb on + strandat 358.091 kb on - strandat 358.103 kb on + strandat 358.108 kb on - strandat 358.169 kb on + strandat 358.169 kb on + strandat 358.198 kb on + strandat 358.199 kb on - strandat 358.206 kb on - strandat 358.246 kb on + strandat 358.265 kb on + strandat 358.267 kb on + strandat 358.268 kb on - strandat 358.270 kb on + strandat 358.270 kb on + strandat 358.271 kb on - strandat 358.271 kb on - strandat 358.282 kb on - strandat 358.282 kb on - strandat 358.481 kb on + strand, within BACOVA_04447at 358.482 kb on - strand, within BACOVA_04447at 358.601 kb on + strand, within BACOVA_04447at 358.757 kb on - strand, within BACOVA_04447at 358.864 kb on + strand, within BACOVA_04447at 358.904 kb on + strand, within BACOVA_04447at 358.904 kb on + strand, within BACOVA_04447at 358.945 kb on - strand, within BACOVA_04447at 358.960 kb on + strand, within BACOVA_04447at 359.002 kb on + strand, within BACOVA_04447at 359.002 kb on + strand, within BACOVA_04447

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C)
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356,960 + BACOVA_04443 0.39 -1.9
356,971 - BACOVA_04443 0.42 -0.1
356,972 + BACOVA_04443 0.42 +0.9
356,978 + BACOVA_04443 0.44 -0.9
356,998 + BACOVA_04443 0.48 +0.5
356,998 + BACOVA_04443 0.48 +0.4
357,024 + BACOVA_04443 0.54 -0.8
357,024 + BACOVA_04443 0.54 +0.6
357,025 - BACOVA_04443 0.54 +0.5
357,035 + BACOVA_04443 0.57 +0.7
357,035 + BACOVA_04443 0.57 -0.2
357,077 - BACOVA_04443 0.66 +0.3
357,077 - BACOVA_04443 0.66 -0.3
357,088 + BACOVA_04443 0.69 -0.1
357,089 - BACOVA_04443 0.69 -0.1
357,098 - BACOVA_04443 0.71 +0.6
357,164 + BACOVA_04443 0.87 +0.0
357,172 + BACOVA_04443 0.88 -0.4
357,172 + BACOVA_04443 0.88 -0.6
357,172 + BACOVA_04443 0.88 -1.0
357,223 + +0.8
357,223 + -0.4
357,227 + +0.3
357,261 + -1.3
357,270 - +0.6
357,274 + -0.7
357,275 - -0.6
357,285 + -1.3
357,385 - BACOVA_04444 0.24 -0.4
357,455 - BACOVA_04444 0.65 +1.1
357,516 - +0.8
357,524 + +0.7
357,681 - +1.0
357,681 - +0.5
357,780 - -0.2
357,977 - BACOVA_04446 0.37 +0.8
357,977 - BACOVA_04446 0.37 +1.3
358,036 - BACOVA_04446 0.84 +0.4
358,063 - +0.4
358,074 - +1.6
358,083 - -0.2
358,083 - +0.8
358,087 + +0.2
358,088 - +0.5
358,090 + +1.0
358,091 - -0.0
358,103 + -0.0
358,108 - +0.3
358,169 + -1.2
358,169 + +0.4
358,198 + -0.3
358,199 - -1.6
358,206 - +0.1
358,246 + -0.8
358,265 + -1.5
358,267 + -1.7
358,268 - +0.2
358,270 + +0.4
358,270 + -0.0
358,271 - -0.2
358,271 - -1.4
358,282 - +0.4
358,282 - -0.8
358,481 + BACOVA_04447 0.16 -0.3
358,482 - BACOVA_04447 0.16 -1.0
358,601 + BACOVA_04447 0.27 -1.0
358,757 - BACOVA_04447 0.42 +0.5
358,864 + BACOVA_04447 0.52 -0.1
358,904 + BACOVA_04447 0.56 +0.1
358,904 + BACOVA_04447 0.56 +0.3
358,945 - BACOVA_04447 0.60 -0.5
358,960 + BACOVA_04447 0.61 -0.8
359,002 + BACOVA_04447 0.65 -0.4
359,002 + BACOVA_04447 0.65 +0.6

Or see this region's nucleotide sequence