Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02848 and BACOVA_02849 are separated by 9 nucleotides BACOVA_02849 and BACOVA_02850 are separated by 17 nucleotides BACOVA_02850 and BACOVA_02851 are separated by 15 nucleotides
BACOVA_02848: BACOVA_02848 - hypothetical protein, at 329,149 to 330,672
_02848
BACOVA_02849: BACOVA_02849 - hypothetical protein, at 330,682 to 331,365
_02849
BACOVA_02850: BACOVA_02850 - hypothetical protein, at 331,383 to 333,050
_02850
BACOVA_02851: BACOVA_02851 - hypothetical protein, at 333,066 to 335,414
_02851
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.387 kb on + strand, within BACOVA_02848 at 330.409 kb on - strand, within BACOVA_02848 at 330.416 kb on - strand, within BACOVA_02848 at 330.416 kb on - strand, within BACOVA_02848 at 330.417 kb on + strand, within BACOVA_02848 at 330.428 kb on + strand, within BACOVA_02848 at 330.456 kb on + strand, within BACOVA_02848 at 330.456 kb on + strand, within BACOVA_02848 at 330.516 kb on + strand, within BACOVA_02848 at 330.568 kb on - strand at 330.572 kb on - strand at 330.572 kb on - strand at 330.580 kb on + strand at 330.581 kb on - strand at 330.581 kb on - strand at 330.583 kb on + strand at 330.648 kb on + strand at 330.649 kb on - strand at 330.682 kb on - strand at 330.682 kb on - strand at 330.691 kb on - strand at 330.694 kb on - strand at 330.696 kb on - strand at 330.696 kb on - strand at 330.696 kb on - strand at 330.707 kb on + strand at 330.708 kb on - strand at 330.712 kb on - strand at 330.730 kb on + strand at 330.731 kb on - strand at 330.756 kb on - strand, within BACOVA_02849 at 330.756 kb on - strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.764 kb on - strand, within BACOVA_02849 at 330.791 kb on - strand, within BACOVA_02849 at 330.791 kb on - strand, within BACOVA_02849 at 330.795 kb on + strand, within BACOVA_02849 at 330.796 kb on - strand, within BACOVA_02849 at 330.833 kb on - strand, within BACOVA_02849 at 330.851 kb on - strand, within BACOVA_02849 at 330.878 kb on + strand, within BACOVA_02849 at 330.879 kb on - strand, within BACOVA_02849 at 330.879 kb on - strand, within BACOVA_02849 at 330.879 kb on - strand, within BACOVA_02849 at 330.959 kb on + strand, within BACOVA_02849 at 330.960 kb on - strand, within BACOVA_02849 at 330.960 kb on - strand, within BACOVA_02849 at 330.976 kb on + strand, within BACOVA_02849 at 330.977 kb on - strand, within BACOVA_02849 at 330.978 kb on + strand, within BACOVA_02849 at 330.978 kb on + strand, within BACOVA_02849 at 330.978 kb on + strand, within BACOVA_02849 at 330.979 kb on - strand, within BACOVA_02849 at 330.982 kb on + strand, within BACOVA_02849 at 330.983 kb on - strand, within BACOVA_02849 at 330.983 kb on - strand, within BACOVA_02849 at 330.985 kb on - strand, within BACOVA_02849 at 330.985 kb on - strand, within BACOVA_02849 at 331.010 kb on + strand, within BACOVA_02849 at 331.015 kb on + strand, within BACOVA_02849 at 331.026 kb on - strand, within BACOVA_02849 at 331.050 kb on + strand, within BACOVA_02849 at 331.090 kb on - strand, within BACOVA_02849 at 331.183 kb on + strand, within BACOVA_02849 at 331.212 kb on + strand, within BACOVA_02849 at 331.212 kb on + strand, within BACOVA_02849 at 331.216 kb on + strand, within BACOVA_02849 at 331.216 kb on + strand, within BACOVA_02849 at 331.217 kb on - strand, within BACOVA_02849 at 331.217 kb on - strand, within BACOVA_02849 at 331.225 kb on - strand, within BACOVA_02849 at 331.227 kb on + strand, within BACOVA_02849 at 331.248 kb on - strand, within BACOVA_02849 at 331.272 kb on + strand, within BACOVA_02849 at 331.272 kb on + strand, within BACOVA_02849 at 331.280 kb on + strand, within BACOVA_02849 at 331.305 kb on + strand at 331.306 kb on - strand at 331.357 kb on + strand at 331.358 kb on - strand at 331.363 kb on + strand at 331.370 kb on - strand at 331.393 kb on - strand at 331.393 kb on - strand at 331.393 kb on - strand at 331.395 kb on - strand at 331.403 kb on + strand at 331.404 kb on - strand at 331.406 kb on - strand at 331.408 kb on + strand at 331.465 kb on - strand at 331.465 kb on - strand at 331.470 kb on + strand at 331.481 kb on - strand at 331.484 kb on + strand at 331.498 kb on + strand at 331.499 kb on - strand at 331.499 kb on - strand at 331.516 kb on + strand at 331.516 kb on + strand at 331.516 kb on + strand at 331.517 kb on - strand at 331.517 kb on - strand at 331.517 kb on - strand at 331.521 kb on - strand at 331.653 kb on - strand, within BACOVA_02850 at 331.662 kb on - strand, within BACOVA_02850 at 331.688 kb on + strand, within BACOVA_02850 at 331.694 kb on - strand, within BACOVA_02850 at 331.721 kb on + strand, within BACOVA_02850 at 331.730 kb on - strand, within BACOVA_02850 at 331.730 kb on - strand, within BACOVA_02850 at 331.794 kb on - strand, within BACOVA_02850 at 331.805 kb on - strand, within BACOVA_02850 at 331.852 kb on + strand, within BACOVA_02850 at 331.884 kb on + strand, within BACOVA_02850 at 331.991 kb on + strand, within BACOVA_02850 at 331.994 kb on + strand, within BACOVA_02850 at 331.995 kb on - strand, within BACOVA_02850 at 331.995 kb on - strand, within BACOVA_02850 at 332.016 kb on - strand, within BACOVA_02850 at 332.021 kb on - strand, within BACOVA_02850 at 332.080 kb on + strand, within BACOVA_02850 at 332.091 kb on + strand, within BACOVA_02850 at 332.092 kb on - strand, within BACOVA_02850 at 332.145 kb on - strand, within BACOVA_02850 at 332.156 kb on - strand, within BACOVA_02850 at 332.171 kb on - strand, within BACOVA_02850 at 332.190 kb on - strand, within BACOVA_02850 at 332.203 kb on - strand, within BACOVA_02850 at 332.214 kb on - strand, within BACOVA_02850 at 332.230 kb on + strand, within BACOVA_02850 at 332.343 kb on - strand, within BACOVA_02850 at 332.361 kb on + strand, within BACOVA_02850 at 332.362 kb on - strand, within BACOVA_02850 at 332.393 kb on + strand, within BACOVA_02850 at 332.394 kb on - strand, within BACOVA_02850 at 332.394 kb on - strand, within BACOVA_02850 at 332.394 kb on - strand, within BACOVA_02850 at 332.397 kb on + strand, within BACOVA_02850 at 332.398 kb on - strand, within BACOVA_02850 at 332.402 kb on + strand, within BACOVA_02850 at 332.406 kb on - strand, within BACOVA_02850 at 332.439 kb on + strand, within BACOVA_02850 at 332.492 kb on - strand, within BACOVA_02850 at 332.505 kb on - strand, within BACOVA_02850 at 332.609 kb on + strand, within BACOVA_02850 at 332.609 kb on + strand, within BACOVA_02850 at 332.625 kb on + strand, within BACOVA_02850 at 332.639 kb on - strand, within BACOVA_02850 at 332.657 kb on - strand, within BACOVA_02850 at 332.689 kb on - strand, within BACOVA_02850 at 332.703 kb on - strand, within BACOVA_02850 at 332.704 kb on + strand, within BACOVA_02850 at 332.705 kb on - strand, within BACOVA_02850 at 332.723 kb on + strand, within BACOVA_02850 at 332.729 kb on - strand, within BACOVA_02850 at 332.729 kb on - strand, within BACOVA_02850 at 332.731 kb on - strand, within BACOVA_02850 at 332.731 kb on - strand, within BACOVA_02850 at 332.772 kb on - strand, within BACOVA_02850 at 332.775 kb on + strand, within BACOVA_02850 at 332.810 kb on - strand, within BACOVA_02850 at 332.869 kb on - strand, within BACOVA_02850 at 332.871 kb on - strand, within BACOVA_02850 at 332.881 kb on + strand, within BACOVA_02850 at 332.882 kb on - strand, within BACOVA_02850 at 332.909 kb on + strand at 332.910 kb on - strand at 332.926 kb on + strand at 332.962 kb on + strand at 332.992 kb on - strand at 333.032 kb on + strand at 333.033 kb on - strand at 333.039 kb on - strand at 333.042 kb on + strand at 333.048 kb on + strand at 333.051 kb on + strand at 333.052 kb on - strand at 333.052 kb on - strand at 333.053 kb on + strand at 333.054 kb on - strand at 333.070 kb on + strand at 333.071 kb on - strand at 333.092 kb on - strand at 333.140 kb on + strand at 333.192 kb on - strand at 333.192 kb on - strand at 333.192 kb on - strand at 333.195 kb on - strand at 333.215 kb on + strand at 333.215 kb on + strand at 333.215 kb on + strand at 333.216 kb on - strand at 333.216 kb on - strand at 333.220 kb on - strand at 333.263 kb on - strand at 333.273 kb on - strand at 333.305 kb on + strand, within BACOVA_02851 at 333.341 kb on - strand, within BACOVA_02851 at 333.341 kb on - strand, within BACOVA_02851 at 333.349 kb on + strand, within BACOVA_02851 at 333.476 kb on + strand, within BACOVA_02851 at 333.491 kb on + strand, within BACOVA_02851 at 333.498 kb on - strand, within BACOVA_02851 at 333.521 kb on - strand, within BACOVA_02851 at 333.566 kb on + strand, within BACOVA_02851 at 333.571 kb on + strand, within BACOVA_02851 at 333.571 kb on + strand, within BACOVA_02851 at 333.571 kb on + strand, within BACOVA_02851 at 333.616 kb on - strand, within BACOVA_02851 at 333.617 kb on + strand, within BACOVA_02851 at 333.618 kb on - strand, within BACOVA_02851 at 333.656 kb on - strand, within BACOVA_02851 at 333.656 kb on - strand, within BACOVA_02851 at 333.694 kb on + strand, within BACOVA_02851 at 333.702 kb on - strand, within BACOVA_02851 at 333.720 kb on + strand, within BACOVA_02851 at 333.723 kb on - strand, within BACOVA_02851 at 333.743 kb on + strand, within BACOVA_02851 at 333.743 kb on + strand, within BACOVA_02851 at 333.751 kb on + strand, within BACOVA_02851 at 333.794 kb on + strand, within BACOVA_02851 at 333.909 kb on + strand, within BACOVA_02851 at 333.910 kb on - strand, within BACOVA_02851 at 333.937 kb on + strand, within BACOVA_02851 at 333.938 kb on - strand, within BACOVA_02851 at 333.944 kb on + strand, within BACOVA_02851 at 333.944 kb on + strand, within BACOVA_02851 at 333.945 kb on - strand, within BACOVA_02851 at 333.954 kb on + strand, within BACOVA_02851 at 333.959 kb on - strand, within BACOVA_02851 at 333.959 kb on - strand, within BACOVA_02851 at 333.965 kb on + strand, within BACOVA_02851 at 333.982 kb on - strand, within BACOVA_02851 at 333.982 kb on - strand, within BACOVA_02851
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C) remove 330,387 + BACOVA_02848 0.81 -0.4 330,409 - BACOVA_02848 0.83 -0.9 330,416 - BACOVA_02848 0.83 -0.2 330,416 - BACOVA_02848 0.83 -0.9 330,417 + BACOVA_02848 0.83 -0.3 330,428 + BACOVA_02848 0.84 -0.3 330,456 + BACOVA_02848 0.86 -0.5 330,456 + BACOVA_02848 0.86 -1.9 330,516 + BACOVA_02848 0.90 +0.8 330,568 - +1.9 330,572 - -1.0 330,572 - -0.0 330,580 + -1.4 330,581 - +0.5 330,581 - -0.3 330,583 + +0.2 330,648 + -1.6 330,649 - -0.6 330,682 - -1.4 330,682 - +0.1 330,691 - -1.1 330,694 - -0.2 330,696 - +0.1 330,696 - +0.8 330,696 - +1.3 330,707 + +0.7 330,708 - +1.7 330,712 - +0.3 330,730 + -0.5 330,731 - -0.9 330,756 - BACOVA_02849 0.11 +0.4 330,756 - BACOVA_02849 0.11 -1.6 330,761 + BACOVA_02849 0.12 -1.6 330,761 + BACOVA_02849 0.12 +0.5 330,761 + BACOVA_02849 0.12 -0.3 330,761 + BACOVA_02849 0.12 -0.1 330,764 - BACOVA_02849 0.12 +1.2 330,791 - BACOVA_02849 0.16 -0.6 330,791 - BACOVA_02849 0.16 -1.2 330,795 + BACOVA_02849 0.17 -2.3 330,796 - BACOVA_02849 0.17 -0.3 330,833 - BACOVA_02849 0.22 -0.7 330,851 - BACOVA_02849 0.25 +0.7 330,878 + BACOVA_02849 0.29 -0.5 330,879 - BACOVA_02849 0.29 -0.2 330,879 - BACOVA_02849 0.29 +0.5 330,879 - BACOVA_02849 0.29 -1.1 330,959 + BACOVA_02849 0.40 +0.1 330,960 - BACOVA_02849 0.41 -0.3 330,960 - BACOVA_02849 0.41 -1.3 330,976 + BACOVA_02849 0.43 -1.2 330,977 - BACOVA_02849 0.43 +0.7 330,978 + BACOVA_02849 0.43 -0.0 330,978 + BACOVA_02849 0.43 -3.6 330,978 + BACOVA_02849 0.43 +0.5 330,979 - BACOVA_02849 0.43 +0.6 330,982 + BACOVA_02849 0.44 +0.3 330,983 - BACOVA_02849 0.44 -2.6 330,983 - BACOVA_02849 0.44 +0.5 330,985 - BACOVA_02849 0.44 -0.7 330,985 - BACOVA_02849 0.44 +0.1 331,010 + BACOVA_02849 0.48 +0.6 331,015 + BACOVA_02849 0.49 +1.7 331,026 - BACOVA_02849 0.50 +0.9 331,050 + BACOVA_02849 0.54 -0.3 331,090 - BACOVA_02849 0.60 +1.4 331,183 + BACOVA_02849 0.73 -0.6 331,212 + BACOVA_02849 0.77 -1.5 331,212 + BACOVA_02849 0.77 -0.8 331,216 + BACOVA_02849 0.78 -1.1 331,216 + BACOVA_02849 0.78 -0.4 331,217 - BACOVA_02849 0.78 -1.3 331,217 - BACOVA_02849 0.78 -0.3 331,225 - BACOVA_02849 0.79 -0.5 331,227 + BACOVA_02849 0.80 +0.4 331,248 - BACOVA_02849 0.83 -0.5 331,272 + BACOVA_02849 0.86 +0.8 331,272 + BACOVA_02849 0.86 -1.9 331,280 + BACOVA_02849 0.87 +0.4 331,305 + -0.8 331,306 - +0.1 331,357 + +1.1 331,358 - -0.1 331,363 + -0.6 331,370 - +0.7 331,393 - +0.9 331,393 - +0.3 331,393 - +0.1 331,395 - -0.1 331,403 + +0.6 331,404 - -1.8 331,406 - +0.2 331,408 + -0.8 331,465 - -0.2 331,465 - -0.9 331,470 + -0.7 331,481 - -0.3 331,484 + +0.0 331,498 + +1.8 331,499 - +0.3 331,499 - -0.1 331,516 + +0.1 331,516 + -0.8 331,516 + +0.4 331,517 - +0.1 331,517 - +0.2 331,517 - -0.3 331,521 - -1.0 331,653 - BACOVA_02850 0.16 +0.1 331,662 - BACOVA_02850 0.17 +0.7 331,688 + BACOVA_02850 0.18 -0.4 331,694 - BACOVA_02850 0.19 +0.3 331,721 + BACOVA_02850 0.20 +1.6 331,730 - BACOVA_02850 0.21 -0.9 331,730 - BACOVA_02850 0.21 +0.4 331,794 - BACOVA_02850 0.25 +0.5 331,805 - BACOVA_02850 0.25 -1.2 331,852 + BACOVA_02850 0.28 -0.4 331,884 + BACOVA_02850 0.30 +0.3 331,991 + BACOVA_02850 0.36 +0.6 331,994 + BACOVA_02850 0.37 -0.5 331,995 - BACOVA_02850 0.37 -0.9 331,995 - BACOVA_02850 0.37 +0.4 332,016 - BACOVA_02850 0.38 +0.9 332,021 - BACOVA_02850 0.38 +1.9 332,080 + BACOVA_02850 0.42 +0.6 332,091 + BACOVA_02850 0.42 +0.5 332,092 - BACOVA_02850 0.43 -0.6 332,145 - BACOVA_02850 0.46 +0.3 332,156 - BACOVA_02850 0.46 -0.1 332,171 - BACOVA_02850 0.47 -0.3 332,190 - BACOVA_02850 0.48 -0.6 332,203 - BACOVA_02850 0.49 -0.7 332,214 - BACOVA_02850 0.50 +0.1 332,230 + BACOVA_02850 0.51 +0.1 332,343 - BACOVA_02850 0.58 +0.2 332,361 + BACOVA_02850 0.59 +0.5 332,362 - BACOVA_02850 0.59 -0.3 332,393 + BACOVA_02850 0.61 +0.7 332,394 - BACOVA_02850 0.61 -0.0 332,394 - BACOVA_02850 0.61 +1.1 332,394 - BACOVA_02850 0.61 -0.3 332,397 + BACOVA_02850 0.61 -0.4 332,398 - BACOVA_02850 0.61 +0.0 332,402 + BACOVA_02850 0.61 +1.7 332,406 - BACOVA_02850 0.61 -2.2 332,439 + BACOVA_02850 0.63 +0.2 332,492 - BACOVA_02850 0.66 +0.5 332,505 - BACOVA_02850 0.67 -1.0 332,609 + BACOVA_02850 0.74 +0.4 332,609 + BACOVA_02850 0.74 -0.3 332,625 + BACOVA_02850 0.74 -1.6 332,639 - BACOVA_02850 0.75 +0.9 332,657 - BACOVA_02850 0.76 +1.4 332,689 - BACOVA_02850 0.78 +0.8 332,703 - BACOVA_02850 0.79 +1.6 332,704 + BACOVA_02850 0.79 -0.3 332,705 - BACOVA_02850 0.79 +0.1 332,723 + BACOVA_02850 0.80 +1.3 332,729 - BACOVA_02850 0.81 +0.3 332,729 - BACOVA_02850 0.81 -0.6 332,731 - BACOVA_02850 0.81 -0.2 332,731 - BACOVA_02850 0.81 -1.1 332,772 - BACOVA_02850 0.83 -0.1 332,775 + BACOVA_02850 0.83 -1.1 332,810 - BACOVA_02850 0.86 +1.4 332,869 - BACOVA_02850 0.89 -0.3 332,871 - BACOVA_02850 0.89 +0.3 332,881 + BACOVA_02850 0.90 +0.7 332,882 - BACOVA_02850 0.90 +0.8 332,909 + +0.5 332,910 - -0.5 332,926 + -0.2 332,962 + -0.3 332,992 - -0.8 333,032 + -1.3 333,033 - +0.5 333,039 - -1.2 333,042 + +0.0 333,048 + -0.2 333,051 + -0.9 333,052 - -0.1 333,052 - -1.5 333,053 + +0.3 333,054 - -1.7 333,070 + -0.8 333,071 - +1.8 333,092 - -0.0 333,140 + -0.7 333,192 - +0.2 333,192 - +1.7 333,192 - -2.0 333,195 - -0.6 333,215 + +0.3 333,215 + +0.0 333,215 + -0.1 333,216 - +1.1 333,216 - -0.2 333,220 - +0.1 333,263 - -0.3 333,273 - -0.8 333,305 + BACOVA_02851 0.10 +0.2 333,341 - BACOVA_02851 0.12 -0.6 333,341 - BACOVA_02851 0.12 +1.4 333,349 + BACOVA_02851 0.12 -0.5 333,476 + BACOVA_02851 0.17 -0.9 333,491 + BACOVA_02851 0.18 +0.0 333,498 - BACOVA_02851 0.18 -0.1 333,521 - BACOVA_02851 0.19 +1.4 333,566 + BACOVA_02851 0.21 +0.5 333,571 + BACOVA_02851 0.21 +1.2 333,571 + BACOVA_02851 0.21 +1.6 333,571 + BACOVA_02851 0.21 +0.1 333,616 - BACOVA_02851 0.23 -1.3 333,617 + BACOVA_02851 0.23 -0.1 333,618 - BACOVA_02851 0.23 +0.3 333,656 - BACOVA_02851 0.25 -0.4 333,656 - BACOVA_02851 0.25 -1.2 333,694 + BACOVA_02851 0.27 -1.0 333,702 - BACOVA_02851 0.27 +0.2 333,720 + BACOVA_02851 0.28 +0.3 333,723 - BACOVA_02851 0.28 -0.5 333,743 + BACOVA_02851 0.29 +1.7 333,743 + BACOVA_02851 0.29 -1.3 333,751 + BACOVA_02851 0.29 +0.5 333,794 + BACOVA_02851 0.31 +1.0 333,909 + BACOVA_02851 0.36 -0.3 333,910 - BACOVA_02851 0.36 -0.2 333,937 + BACOVA_02851 0.37 -0.3 333,938 - BACOVA_02851 0.37 -0.3 333,944 + BACOVA_02851 0.37 -0.9 333,944 + BACOVA_02851 0.37 +0.4 333,945 - BACOVA_02851 0.37 -0.3 333,954 + BACOVA_02851 0.38 -0.0 333,959 - BACOVA_02851 0.38 -1.3 333,959 - BACOVA_02851 0.38 -0.7 333,965 + BACOVA_02851 0.38 -0.2 333,982 - BACOVA_02851 0.39 -0.3 333,982 - BACOVA_02851 0.39 +0.1
Or see this region's nucleotide sequence