Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05254

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05251 and BACOVA_05252 are separated by 123 nucleotidesBACOVA_05252 and BACOVA_05253 are separated by 11 nucleotidesBACOVA_05253 and BACOVA_05254 are separated by 161 nucleotidesBACOVA_05254 and BACOVA_05255 are separated by 25 nucleotides BACOVA_05251: BACOVA_05251 - YmdA/YtgF family protein, at 749,411 to 750,946 _05251 BACOVA_05252: BACOVA_05252 - hypothetical protein, at 751,070 to 751,360 _05252 BACOVA_05253: BACOVA_05253 - hypothetical protein, at 751,372 to 751,665 _05253 BACOVA_05254: BACOVA_05254 - hypothetical protein, at 751,827 to 752,021 _05254 BACOVA_05255: BACOVA_05255 - hypothetical protein, at 752,047 to 753,135 _05255 Position (kb) 751 752 753Strain fitness (log2 ratio) -2 -1 0 1at 750.961 kb on - strandat 750.965 kb on - strandat 750.967 kb on - strandat 750.969 kb on - strandat 751.040 kb on - strandat 751.082 kb on - strandat 751.361 kb on - strandat 751.670 kb on - strandat 751.699 kb on - strandat 751.752 kb on + strandat 751.779 kb on + strandat 751.779 kb on + strandat 751.779 kb on + strandat 751.780 kb on - strandat 751.794 kb on - strandat 751.816 kb on - strandat 751.818 kb on - strandat 751.818 kb on - strandat 751.825 kb on - strandat 751.826 kb on + strandat 751.826 kb on + strandat 751.827 kb on - strandat 751.851 kb on + strand, within BACOVA_05254at 751.852 kb on - strand, within BACOVA_05254at 751.895 kb on + strand, within BACOVA_05254at 751.895 kb on + strand, within BACOVA_05254at 751.920 kb on - strand, within BACOVA_05254at 751.980 kb on - strand, within BACOVA_05254at 751.985 kb on + strand, within BACOVA_05254at 751.986 kb on - strand, within BACOVA_05254at 751.986 kb on - strand, within BACOVA_05254at 752.015 kb on - strandat 752.018 kb on - strandat 752.019 kb on + strandat 752.020 kb on - strandat 752.039 kb on - strandat 752.042 kb on + strandat 752.063 kb on + strandat 752.063 kb on + strandat 752.063 kb on + strandat 752.064 kb on - strandat 752.064 kb on - strandat 752.307 kb on + strand, within BACOVA_05255at 752.440 kb on - strand, within BACOVA_05255at 752.480 kb on + strand, within BACOVA_05255at 752.481 kb on - strand, within BACOVA_05255at 752.551 kb on + strand, within BACOVA_05255at 752.552 kb on - strand, within BACOVA_05255at 752.552 kb on - strand, within BACOVA_05255at 752.615 kb on - strand, within BACOVA_05255at 752.625 kb on + strand, within BACOVA_05255at 752.626 kb on - strand, within BACOVA_05255at 752.655 kb on + strand, within BACOVA_05255at 752.661 kb on - strand, within BACOVA_05255at 752.679 kb on + strand, within BACOVA_05255at 752.682 kb on + strand, within BACOVA_05255at 752.816 kb on + strand, within BACOVA_05255at 752.816 kb on + strand, within BACOVA_05255at 752.816 kb on + strand, within BACOVA_05255at 752.821 kb on - strand, within BACOVA_05255at 752.823 kb on + strand, within BACOVA_05255at 752.845 kb on - strand, within BACOVA_05255at 752.877 kb on + strand, within BACOVA_05255at 752.877 kb on + strand, within BACOVA_05255at 752.878 kb on - strand, within BACOVA_05255at 752.880 kb on - strand, within BACOVA_05255at 752.941 kb on - strand, within BACOVA_05255at 752.961 kb on + strand, within BACOVA_05255at 752.962 kb on - strand, within BACOVA_05255at 753.021 kb on + strand, within BACOVA_05255

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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750,961 - -1.1
750,965 - -0.2
750,967 - -0.3
750,969 - +0.7
751,040 - -1.7
751,082 - -0.7
751,361 - -0.1
751,670 - +0.4
751,699 - +0.2
751,752 + -1.3
751,779 + -0.6
751,779 + -0.7
751,779 + -0.4
751,780 - +0.9
751,794 - -1.1
751,816 - -0.1
751,818 - -0.3
751,818 - +0.5
751,825 - +0.5
751,826 + -1.9
751,826 + -1.9
751,827 - -0.1
751,851 + BACOVA_05254 0.12 -0.9
751,852 - BACOVA_05254 0.13 +0.8
751,895 + BACOVA_05254 0.35 -1.1
751,895 + BACOVA_05254 0.35 +0.3
751,920 - BACOVA_05254 0.48 -0.4
751,980 - BACOVA_05254 0.78 -1.8
751,985 + BACOVA_05254 0.81 +0.1
751,986 - BACOVA_05254 0.82 +0.4
751,986 - BACOVA_05254 0.82 -2.5
752,015 - -0.1
752,018 - +1.6
752,019 + -0.2
752,020 - +0.4
752,039 - -0.4
752,042 + -0.4
752,063 + +1.0
752,063 + +0.2
752,063 + -0.2
752,064 - -0.0
752,064 - -0.6
752,307 + BACOVA_05255 0.24 -0.0
752,440 - BACOVA_05255 0.36 -0.8
752,480 + BACOVA_05255 0.40 +0.0
752,481 - BACOVA_05255 0.40 -0.4
752,551 + BACOVA_05255 0.46 -0.6
752,552 - BACOVA_05255 0.46 -0.8
752,552 - BACOVA_05255 0.46 +1.6
752,615 - BACOVA_05255 0.52 +0.9
752,625 + BACOVA_05255 0.53 -0.7
752,626 - BACOVA_05255 0.53 +0.5
752,655 + BACOVA_05255 0.56 -0.1
752,661 - BACOVA_05255 0.56 +0.1
752,679 + BACOVA_05255 0.58 -1.8
752,682 + BACOVA_05255 0.58 -0.1
752,816 + BACOVA_05255 0.71 -2.0
752,816 + BACOVA_05255 0.71 -0.2
752,816 + BACOVA_05255 0.71 -1.5
752,821 - BACOVA_05255 0.71 +1.1
752,823 + BACOVA_05255 0.71 -1.3
752,845 - BACOVA_05255 0.73 +1.5
752,877 + BACOVA_05255 0.76 +0.1
752,877 + BACOVA_05255 0.76 +1.5
752,878 - BACOVA_05255 0.76 -0.4
752,880 - BACOVA_05255 0.76 -0.3
752,941 - BACOVA_05255 0.82 +0.4
752,961 + BACOVA_05255 0.84 -0.1
752,962 - BACOVA_05255 0.84 -0.3
753,021 + BACOVA_05255 0.89 -0.2

Or see this region's nucleotide sequence