Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04491

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04490 and BACOVA_04491 are separated by 151 nucleotidesBACOVA_04491 and BACOVA_04492 are separated by 17 nucleotidesBACOVA_04492 and BACOVA_04493 overlap by 4 nucleotides BACOVA_04490: BACOVA_04490 - pyruvate synthase, at 418,661 to 422,209 _04490 BACOVA_04491: BACOVA_04491 - ABC transporter, substrate-binding protein, QAT family, at 422,361 to 423,233 _04491 BACOVA_04492: BACOVA_04492 - ABC transporter, permease protein, at 423,251 to 424,075 _04492 BACOVA_04493: BACOVA_04493 - glycine betaine/L-proline transport ATP binding subunit, at 424,072 to 425,298 _04493 Position (kb) 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1at 421.364 kb on - strand, within BACOVA_04490at 421.393 kb on - strand, within BACOVA_04490at 421.424 kb on - strand, within BACOVA_04490at 421.459 kb on + strand, within BACOVA_04490at 421.499 kb on - strand, within BACOVA_04490at 421.533 kb on - strand, within BACOVA_04490at 421.533 kb on - strand, within BACOVA_04490at 421.580 kb on + strand, within BACOVA_04490at 421.611 kb on + strand, within BACOVA_04490at 421.611 kb on + strand, within BACOVA_04490at 421.687 kb on + strand, within BACOVA_04490at 421.688 kb on - strand, within BACOVA_04490at 421.715 kb on - strand, within BACOVA_04490at 421.741 kb on - strand, within BACOVA_04490at 421.771 kb on + strand, within BACOVA_04490at 421.775 kb on + strand, within BACOVA_04490at 421.781 kb on + strand, within BACOVA_04490at 421.781 kb on + strand, within BACOVA_04490at 421.781 kb on + strand, within BACOVA_04490at 421.786 kb on - strand, within BACOVA_04490at 421.786 kb on - strand, within BACOVA_04490at 421.787 kb on + strand, within BACOVA_04490at 421.838 kb on - strand, within BACOVA_04490at 421.876 kb on + strandat 421.894 kb on + strandat 421.894 kb on + strandat 421.895 kb on - strandat 421.918 kb on + strandat 421.919 kb on - strandat 421.954 kb on + strandat 422.085 kb on - strandat 422.094 kb on + strandat 422.172 kb on - strandat 422.210 kb on + strandat 422.213 kb on + strandat 422.213 kb on + strandat 422.214 kb on - strandat 422.217 kb on - strandat 422.217 kb on - strandat 422.221 kb on + strandat 422.224 kb on - strandat 422.254 kb on - strandat 422.268 kb on + strandat 422.269 kb on - strandat 422.269 kb on - strandat 422.293 kb on + strandat 422.294 kb on - strandat 422.297 kb on - strandat 422.334 kb on + strandat 422.347 kb on - strandat 422.347 kb on - strandat 422.347 kb on - strandat 422.362 kb on + strandat 422.390 kb on + strandat 422.390 kb on + strandat 422.390 kb on + strandat 422.423 kb on + strandat 422.431 kb on - strandat 422.463 kb on - strand, within BACOVA_04491at 422.471 kb on + strand, within BACOVA_04491at 422.481 kb on - strand, within BACOVA_04491at 422.481 kb on - strand, within BACOVA_04491at 422.561 kb on + strand, within BACOVA_04491at 422.562 kb on - strand, within BACOVA_04491at 422.568 kb on + strand, within BACOVA_04491at 422.568 kb on + strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.589 kb on + strand, within BACOVA_04491at 422.589 kb on + strand, within BACOVA_04491at 422.589 kb on + strand, within BACOVA_04491at 422.590 kb on - strand, within BACOVA_04491at 422.735 kb on + strand, within BACOVA_04491at 422.735 kb on + strand, within BACOVA_04491at 422.738 kb on - strand, within BACOVA_04491at 422.809 kb on - strand, within BACOVA_04491at 422.911 kb on - strand, within BACOVA_04491at 422.911 kb on - strand, within BACOVA_04491at 422.941 kb on + strand, within BACOVA_04491at 422.952 kb on - strand, within BACOVA_04491at 422.953 kb on + strand, within BACOVA_04491at 422.953 kb on + strand, within BACOVA_04491at 422.973 kb on + strand, within BACOVA_04491at 423.015 kb on - strand, within BACOVA_04491at 423.015 kb on - strand, within BACOVA_04491at 423.015 kb on - strand, within BACOVA_04491at 423.019 kb on - strand, within BACOVA_04491at 423.061 kb on + strand, within BACOVA_04491at 423.107 kb on + strand, within BACOVA_04491at 423.107 kb on + strand, within BACOVA_04491at 423.108 kb on - strand, within BACOVA_04491at 423.128 kb on - strand, within BACOVA_04491at 423.215 kb on + strandat 423.216 kb on - strandat 423.217 kb on + strandat 423.220 kb on - strandat 423.290 kb on - strandat 423.290 kb on - strandat 423.304 kb on + strandat 423.305 kb on - strandat 423.308 kb on + strandat 423.323 kb on + strandat 423.323 kb on + strandat 423.325 kb on + strandat 423.424 kb on + strand, within BACOVA_04492at 423.425 kb on - strand, within BACOVA_04492at 423.425 kb on - strand, within BACOVA_04492at 423.439 kb on + strand, within BACOVA_04492at 423.439 kb on + strand, within BACOVA_04492at 423.439 kb on + strand, within BACOVA_04492at 423.440 kb on - strand, within BACOVA_04492at 423.496 kb on + strand, within BACOVA_04492at 423.496 kb on + strand, within BACOVA_04492at 423.499 kb on - strand, within BACOVA_04492at 423.504 kb on - strand, within BACOVA_04492at 423.601 kb on + strand, within BACOVA_04492at 423.602 kb on - strand, within BACOVA_04492at 423.764 kb on + strand, within BACOVA_04492at 423.765 kb on - strand, within BACOVA_04492at 423.790 kb on + strand, within BACOVA_04492at 423.790 kb on + strand, within BACOVA_04492at 423.791 kb on - strand, within BACOVA_04492at 423.823 kb on + strand, within BACOVA_04492at 423.854 kb on + strand, within BACOVA_04492at 423.854 kb on + strand, within BACOVA_04492at 423.855 kb on - strand, within BACOVA_04492at 423.855 kb on - strand, within BACOVA_04492at 423.857 kb on + strand, within BACOVA_04492at 423.858 kb on - strand, within BACOVA_04492at 423.924 kb on - strand, within BACOVA_04492at 423.932 kb on + strand, within BACOVA_04492at 423.933 kb on - strand, within BACOVA_04492at 423.935 kb on - strand, within BACOVA_04492at 423.935 kb on - strand, within BACOVA_04492at 423.935 kb on - strand, within BACOVA_04492at 423.977 kb on - strand, within BACOVA_04492at 424.025 kb on + strandat 424.052 kb on + strandat 424.052 kb on + strandat 424.052 kb on + strandat 424.053 kb on - strandat 424.054 kb on + strandat 424.054 kb on + strandat 424.054 kb on + strandat 424.055 kb on - strandat 424.055 kb on - strandat 424.055 kb on - strandat 424.056 kb on + strandat 424.064 kb on + strandat 424.067 kb on - strandat 424.082 kb on - strandat 424.097 kb on - strandat 424.141 kb on + strandat 424.196 kb on - strand, within BACOVA_04493at 424.229 kb on - strand, within BACOVA_04493at 424.229 kb on - strand, within BACOVA_04493at 424.229 kb on - strand, within BACOVA_04493

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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421,364 - BACOVA_04490 0.76 -1.5
421,393 - BACOVA_04490 0.77 +0.0
421,424 - BACOVA_04490 0.78 -2.9
421,459 + BACOVA_04490 0.79 -3.0
421,499 - BACOVA_04490 0.80 -2.3
421,533 - BACOVA_04490 0.81 -0.7
421,533 - BACOVA_04490 0.81 -2.1
421,580 + BACOVA_04490 0.82 -1.2
421,611 + BACOVA_04490 0.83 -2.2
421,611 + BACOVA_04490 0.83 -0.7
421,687 + BACOVA_04490 0.85 -0.7
421,688 - BACOVA_04490 0.85 -0.2
421,715 - BACOVA_04490 0.86 -3.5
421,741 - BACOVA_04490 0.87 -1.5
421,771 + BACOVA_04490 0.88 -2.7
421,775 + BACOVA_04490 0.88 -3.7
421,781 + BACOVA_04490 0.88 -1.6
421,781 + BACOVA_04490 0.88 -2.2
421,781 + BACOVA_04490 0.88 -0.4
421,786 - BACOVA_04490 0.88 -0.5
421,786 - BACOVA_04490 0.88 -0.7
421,787 + BACOVA_04490 0.88 -2.2
421,838 - BACOVA_04490 0.90 -1.6
421,876 + -3.0
421,894 + -2.5
421,894 + -2.2
421,895 - +0.4
421,918 + -1.7
421,919 - +0.3
421,954 + -2.7
422,085 - -2.3
422,094 + -2.1
422,172 - -2.2
422,210 + -1.1
422,213 + -1.2
422,213 + -1.2
422,214 - -1.0
422,217 - -0.2
422,217 - -2.3
422,221 + +0.3
422,224 - -0.4
422,254 - -1.1
422,268 + +0.4
422,269 - -0.0
422,269 - +1.0
422,293 + -0.2
422,294 - -0.2
422,297 - -1.3
422,334 + -0.8
422,347 - -2.2
422,347 - +1.1
422,347 - -0.5
422,362 + +0.4
422,390 + +0.9
422,390 + +0.0
422,390 + -0.4
422,423 + -1.7
422,431 - -0.5
422,463 - BACOVA_04491 0.12 +0.3
422,471 + BACOVA_04491 0.13 -0.5
422,481 - BACOVA_04491 0.14 +0.2
422,481 - BACOVA_04491 0.14 +1.2
422,561 + BACOVA_04491 0.23 +0.1
422,562 - BACOVA_04491 0.23 +0.0
422,568 + BACOVA_04491 0.24 +1.3
422,568 + BACOVA_04491 0.24 +1.6
422,569 - BACOVA_04491 0.24 -0.8
422,569 - BACOVA_04491 0.24 -0.5
422,569 - BACOVA_04491 0.24 +0.4
422,569 - BACOVA_04491 0.24 +0.8
422,569 - BACOVA_04491 0.24 +0.7
422,589 + BACOVA_04491 0.26 -0.5
422,589 + BACOVA_04491 0.26 -0.1
422,589 + BACOVA_04491 0.26 -0.6
422,590 - BACOVA_04491 0.26 +0.8
422,735 + BACOVA_04491 0.43 -0.7
422,735 + BACOVA_04491 0.43 +0.0
422,738 - BACOVA_04491 0.43 -0.3
422,809 - BACOVA_04491 0.51 -0.2
422,911 - BACOVA_04491 0.63 -0.3
422,911 - BACOVA_04491 0.63 -1.0
422,941 + BACOVA_04491 0.66 -0.9
422,952 - BACOVA_04491 0.68 -1.0
422,953 + BACOVA_04491 0.68 +0.2
422,953 + BACOVA_04491 0.68 +1.0
422,973 + BACOVA_04491 0.70 -1.0
423,015 - BACOVA_04491 0.75 +0.7
423,015 - BACOVA_04491 0.75 -0.5
423,015 - BACOVA_04491 0.75 -0.1
423,019 - BACOVA_04491 0.75 +0.7
423,061 + BACOVA_04491 0.80 -1.3
423,107 + BACOVA_04491 0.85 +0.1
423,107 + BACOVA_04491 0.85 +0.8
423,108 - BACOVA_04491 0.86 -0.4
423,128 - BACOVA_04491 0.88 +1.0
423,215 + +0.1
423,216 - -0.7
423,217 + +1.2
423,220 - -0.8
423,290 - -2.0
423,290 - +0.0
423,304 + -0.8
423,305 - +0.6
423,308 + +1.2
423,323 + -0.4
423,323 + +1.3
423,325 + -0.8
423,424 + BACOVA_04492 0.21 +0.2
423,425 - BACOVA_04492 0.21 +0.3
423,425 - BACOVA_04492 0.21 +0.4
423,439 + BACOVA_04492 0.23 -0.0
423,439 + BACOVA_04492 0.23 +0.5
423,439 + BACOVA_04492 0.23 +0.8
423,440 - BACOVA_04492 0.23 -0.4
423,496 + BACOVA_04492 0.30 -0.1
423,496 + BACOVA_04492 0.30 +0.3
423,499 - BACOVA_04492 0.30 -0.5
423,504 - BACOVA_04492 0.31 -0.5
423,601 + BACOVA_04492 0.42 -0.7
423,602 - BACOVA_04492 0.43 -1.0
423,764 + BACOVA_04492 0.62 -0.4
423,765 - BACOVA_04492 0.62 +0.3
423,790 + BACOVA_04492 0.65 +0.0
423,790 + BACOVA_04492 0.65 +0.1
423,791 - BACOVA_04492 0.65 -0.6
423,823 + BACOVA_04492 0.69 -0.1
423,854 + BACOVA_04492 0.73 -0.9
423,854 + BACOVA_04492 0.73 +0.4
423,855 - BACOVA_04492 0.73 +0.8
423,855 - BACOVA_04492 0.73 -0.4
423,857 + BACOVA_04492 0.73 +0.0
423,858 - BACOVA_04492 0.74 +0.6
423,924 - BACOVA_04492 0.82 +0.2
423,932 + BACOVA_04492 0.83 -0.4
423,933 - BACOVA_04492 0.83 -0.5
423,935 - BACOVA_04492 0.83 -0.5
423,935 - BACOVA_04492 0.83 -0.3
423,935 - BACOVA_04492 0.83 +0.1
423,977 - BACOVA_04492 0.88 -1.3
424,025 + +0.3
424,052 + +0.3
424,052 + +0.1
424,052 + +0.5
424,053 - +0.2
424,054 + -1.3
424,054 + -1.2
424,054 + -0.7
424,055 - -0.7
424,055 - -0.1
424,055 - +0.6
424,056 + +0.3
424,064 + +0.1
424,067 - +0.7
424,082 - +0.6
424,097 - +0.0
424,141 + -1.7
424,196 - BACOVA_04493 0.10 -0.4
424,229 - BACOVA_04493 0.13 +0.4
424,229 - BACOVA_04493 0.13 -1.6
424,229 - BACOVA_04493 0.13 +0.1

Or see this region's nucleotide sequence