Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04228 and BACOVA_04229 are separated by 114 nucleotides BACOVA_04229 and BACOVA_04230 overlap by 8 nucleotides BACOVA_04230 and BACOVA_04231 are separated by 283 nucleotides
BACOVA_04228: BACOVA_04228 - A/G-specific adenine glycosylase, at 107,369 to 108,418
_04228
BACOVA_04229: BACOVA_04229 - hypothetical protein, at 108,533 to 108,637
_04229
BACOVA_04230: BACOVA_04230 - DNA-binding protein HU, at 108,630 to 108,905
_04230
BACOVA_04231: BACOVA_04231 - S1 RNA binding domain protein, at 109,189 to 110,763
_04231
Position (kb)
108
109 Strain fitness (log2 ratio)
-1
0
1 at 107.648 kb on + strand, within BACOVA_04228 at 107.648 kb on + strand, within BACOVA_04228 at 107.649 kb on - strand, within BACOVA_04228 at 107.680 kb on + strand, within BACOVA_04228 at 107.699 kb on - strand, within BACOVA_04228 at 107.702 kb on + strand, within BACOVA_04228 at 107.703 kb on - strand, within BACOVA_04228 at 107.704 kb on + strand, within BACOVA_04228 at 107.705 kb on - strand, within BACOVA_04228 at 107.730 kb on + strand, within BACOVA_04228 at 107.731 kb on - strand, within BACOVA_04228 at 107.863 kb on + strand, within BACOVA_04228 at 107.920 kb on + strand, within BACOVA_04228 at 107.987 kb on + strand, within BACOVA_04228 at 108.047 kb on - strand, within BACOVA_04228 at 108.052 kb on - strand, within BACOVA_04228 at 108.068 kb on - strand, within BACOVA_04228 at 108.184 kb on - strand, within BACOVA_04228 at 108.201 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.262 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.314 kb on - strand at 108.393 kb on - strand at 108.419 kb on - strand at 108.435 kb on + strand at 108.436 kb on - strand at 108.438 kb on + strand at 108.443 kb on - strand at 108.450 kb on - strand at 108.450 kb on - strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.457 kb on - strand at 108.457 kb on - strand at 108.494 kb on - strand at 108.510 kb on + strand at 108.510 kb on + strand at 108.543 kb on + strand at 108.543 kb on + strand at 108.919 kb on + strand at 108.919 kb on + strand at 109.001 kb on + strand at 109.079 kb on + strand at 109.079 kb on + strand at 109.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 107,648 + BACOVA_04228 0.27 -0.1 107,648 + BACOVA_04228 0.27 +1.2 107,649 - BACOVA_04228 0.27 +0.7 107,680 + BACOVA_04228 0.30 -0.2 107,699 - BACOVA_04228 0.31 +0.3 107,702 + BACOVA_04228 0.32 +1.4 107,703 - BACOVA_04228 0.32 +0.6 107,704 + BACOVA_04228 0.32 -0.3 107,705 - BACOVA_04228 0.32 -0.5 107,730 + BACOVA_04228 0.34 -0.2 107,731 - BACOVA_04228 0.34 +0.7 107,863 + BACOVA_04228 0.47 -0.7 107,920 + BACOVA_04228 0.52 -0.3 107,987 + BACOVA_04228 0.59 -1.7 108,047 - BACOVA_04228 0.65 +1.1 108,052 - BACOVA_04228 0.65 -0.2 108,068 - BACOVA_04228 0.67 +0.6 108,184 - BACOVA_04228 0.78 +1.3 108,201 + BACOVA_04228 0.79 -0.4 108,242 + BACOVA_04228 0.83 -0.4 108,242 + BACOVA_04228 0.83 +0.9 108,262 + BACOVA_04228 0.85 +0.3 108,282 + BACOVA_04228 0.87 +0.7 108,282 + BACOVA_04228 0.87 +0.3 108,314 - -0.1 108,393 - -0.5 108,419 - +0.9 108,435 + +0.4 108,436 - +0.6 108,438 + -0.3 108,443 - +0.0 108,450 - +0.2 108,450 - -0.5 108,456 + -0.3 108,456 + -0.2 108,457 - +0.7 108,457 - -0.2 108,494 - -0.5 108,510 + -0.8 108,510 + -0.9 108,543 + +0.1 108,543 + +1.1 108,919 + +0.7 108,919 + +0.2 109,001 + -0.2 109,079 + +0.4 109,079 + +0.3 109,151 + +1.1
Or see this region's nucleotide sequence