Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03523 and BACOVA_03524 are separated by 192 nucleotides BACOVA_03524 and BACOVA_03525 overlap by 23 nucleotides BACOVA_03525 and BACOVA_03526 are separated by 52 nucleotides BACOVA_03526 and BACOVA_03527 are separated by 77 nucleotides BACOVA_03527 and BACOVA_03528 are separated by 26 nucleotides
BACOVA_03523: BACOVA_03523 - translation elongation factor P, at 300,443 to 301,009
_03523
BACOVA_03524: BACOVA_03524 - ribosomal protein L34, at 301,202 to 301,360
_03524
BACOVA_03525: BACOVA_03525 - hypothetical protein, at 301,338 to 301,478
_03525
BACOVA_03526: BACOVA_03526 - hypothetical protein, at 301,531 to 301,647
_03526
BACOVA_03527: BACOVA_03527 - PASTA domain protein, at 301,725 to 302,384
_03527
BACOVA_03528: BACOVA_03528 - pseudouridine synthase, RluA family, at 302,411 to 303,484
_03528
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 300.733 kb on + strand, within BACOVA_03523 at 300.769 kb on + strand, within BACOVA_03523 at 300.769 kb on + strand, within BACOVA_03523 at 300.770 kb on - strand, within BACOVA_03523 at 300.771 kb on + strand, within BACOVA_03523 at 300.771 kb on + strand, within BACOVA_03523 at 300.772 kb on - strand, within BACOVA_03523 at 300.816 kb on - strand, within BACOVA_03523 at 300.822 kb on - strand, within BACOVA_03523 at 300.868 kb on - strand, within BACOVA_03523 at 300.878 kb on + strand, within BACOVA_03523 at 300.917 kb on - strand, within BACOVA_03523 at 300.926 kb on + strand, within BACOVA_03523 at 300.927 kb on - strand, within BACOVA_03523 at 300.927 kb on - strand, within BACOVA_03523 at 300.927 kb on - strand, within BACOVA_03523 at 300.952 kb on - strand, within BACOVA_03523 at 301.010 kb on - strand at 301.010 kb on - strand at 301.027 kb on + strand at 301.028 kb on - strand at 301.029 kb on + strand at 301.440 kb on - strand, within BACOVA_03525 at 301.440 kb on - strand, within BACOVA_03525 at 301.440 kb on - strand, within BACOVA_03525 at 301.442 kb on + strand, within BACOVA_03525 at 301.442 kb on + strand, within BACOVA_03525 at 301.442 kb on + strand, within BACOVA_03525 at 301.502 kb on + strand at 301.525 kb on + strand at 301.525 kb on + strand at 301.526 kb on - strand at 301.535 kb on + strand at 301.536 kb on - strand at 301.540 kb on + strand at 301.541 kb on - strand at 301.541 kb on - strand at 301.541 kb on - strand at 301.572 kb on - strand, within BACOVA_03526 at 301.572 kb on - strand, within BACOVA_03526 at 301.574 kb on + strand, within BACOVA_03526 at 301.574 kb on + strand, within BACOVA_03526 at 301.574 kb on + strand, within BACOVA_03526 at 301.575 kb on - strand, within BACOVA_03526 at 301.575 kb on - strand, within BACOVA_03526 at 301.590 kb on + strand, within BACOVA_03526 at 301.608 kb on - strand, within BACOVA_03526 at 301.632 kb on - strand, within BACOVA_03526 at 301.648 kb on + strand at 301.648 kb on + strand at 301.648 kb on + strand at 301.649 kb on - strand at 301.649 kb on - strand at 301.649 kb on - strand at 301.649 kb on - strand at 301.652 kb on + strand at 301.653 kb on - strand at 301.655 kb on - strand at 302.288 kb on + strand, within BACOVA_03527 at 302.385 kb on + strand at 302.389 kb on + strand at 302.389 kb on + strand at 302.458 kb on + strand at 302.460 kb on + strand at 302.460 kb on + strand at 302.511 kb on + strand at 302.511 kb on + strand at 302.546 kb on + strand, within BACOVA_03528 at 302.546 kb on + strand, within BACOVA_03528 at 302.671 kb on + strand, within BACOVA_03528 at 302.734 kb on + strand, within BACOVA_03528 at 302.741 kb on + strand, within BACOVA_03528 at 302.762 kb on + strand, within BACOVA_03528 at 302.849 kb on + strand, within BACOVA_03528 at 302.856 kb on + strand, within BACOVA_03528 at 302.914 kb on + strand, within BACOVA_03528 at 302.925 kb on + strand, within BACOVA_03528 at 302.925 kb on + strand, within BACOVA_03528 at 303.002 kb on + strand, within BACOVA_03528 at 303.002 kb on + strand, within BACOVA_03528 at 303.067 kb on + strand, within BACOVA_03528 at 303.137 kb on + strand, within BACOVA_03528 at 303.165 kb on + strand, within BACOVA_03528 at 303.181 kb on + strand, within BACOVA_03528 at 303.183 kb on + strand, within BACOVA_03528 at 303.183 kb on + strand, within BACOVA_03528 at 303.199 kb on + strand, within BACOVA_03528
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 300,733 + BACOVA_03523 0.51 -2.0 300,769 + BACOVA_03523 0.57 -0.2 300,769 + BACOVA_03523 0.57 +0.4 300,770 - BACOVA_03523 0.58 -1.6 300,771 + BACOVA_03523 0.58 -0.3 300,771 + BACOVA_03523 0.58 -0.3 300,772 - BACOVA_03523 0.58 -0.0 300,816 - BACOVA_03523 0.66 -2.3 300,822 - BACOVA_03523 0.67 +0.2 300,868 - BACOVA_03523 0.75 -0.6 300,878 + BACOVA_03523 0.77 -0.8 300,917 - BACOVA_03523 0.84 -3.3 300,926 + BACOVA_03523 0.85 -2.8 300,927 - BACOVA_03523 0.85 -0.0 300,927 - BACOVA_03523 0.85 -0.8 300,927 - BACOVA_03523 0.85 -2.5 300,952 - BACOVA_03523 0.90 -2.7 301,010 - -0.1 301,010 - -0.5 301,027 + -0.6 301,028 - -0.7 301,029 + -1.2 301,440 - BACOVA_03525 0.72 +0.2 301,440 - BACOVA_03525 0.72 -0.5 301,440 - BACOVA_03525 0.72 -0.4 301,442 + BACOVA_03525 0.74 +0.6 301,442 + BACOVA_03525 0.74 -1.3 301,442 + BACOVA_03525 0.74 -1.1 301,502 + +1.7 301,525 + +0.8 301,525 + +0.9 301,526 - -1.0 301,535 + -0.9 301,536 - +0.4 301,540 + +0.5 301,541 - +0.2 301,541 - +1.1 301,541 - -1.5 301,572 - BACOVA_03526 0.35 +0.2 301,572 - BACOVA_03526 0.35 -0.2 301,574 + BACOVA_03526 0.37 +0.3 301,574 + BACOVA_03526 0.37 +0.5 301,574 + BACOVA_03526 0.37 +0.3 301,575 - BACOVA_03526 0.38 +0.3 301,575 - BACOVA_03526 0.38 -0.3 301,590 + BACOVA_03526 0.50 +0.3 301,608 - BACOVA_03526 0.66 +2.7 301,632 - BACOVA_03526 0.86 -0.1 301,648 + +0.5 301,648 + -0.4 301,648 + -0.7 301,649 - -0.8 301,649 - -0.3 301,649 - -0.0 301,649 - +0.3 301,652 + -0.8 301,653 - +0.3 301,655 - -0.4 302,288 + BACOVA_03527 0.85 -0.2 302,385 + +0.7 302,389 + +0.4 302,389 + -0.1 302,458 + -0.2 302,460 + -0.2 302,460 + -1.2 302,511 + -1.1 302,511 + +0.6 302,546 + BACOVA_03528 0.13 -0.1 302,546 + BACOVA_03528 0.13 -1.0 302,671 + BACOVA_03528 0.24 -0.5 302,734 + BACOVA_03528 0.30 -0.9 302,741 + BACOVA_03528 0.31 -1.0 302,762 + BACOVA_03528 0.33 -0.0 302,849 + BACOVA_03528 0.41 -1.6 302,856 + BACOVA_03528 0.41 +0.2 302,914 + BACOVA_03528 0.47 -1.0 302,925 + BACOVA_03528 0.48 -0.1 302,925 + BACOVA_03528 0.48 -1.0 303,002 + BACOVA_03528 0.55 +0.0 303,002 + BACOVA_03528 0.55 -0.1 303,067 + BACOVA_03528 0.61 -0.0 303,137 + BACOVA_03528 0.68 -1.4 303,165 + BACOVA_03528 0.70 -1.0 303,181 + BACOVA_03528 0.72 -0.8 303,183 + BACOVA_03528 0.72 -0.2 303,183 + BACOVA_03528 0.72 -0.5 303,199 + BACOVA_03528 0.73 -0.3
Or see this region's nucleotide sequence