Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03216

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03214 and BACOVA_03216 are separated by 5 nucleotidesBACOVA_03216 and BACOVA_03215 overlap by 357 nucleotidesBACOVA_03215 and BACOVA_03217 are separated by 477 nucleotides BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012 _03214 BACOVA_03216: BACOVA_03216 - hypothetical protein, at 304,018 to 304,527 _03216 BACOVA_03215: BACOVA_03215 - hypothetical protein, at 304,171 to 304,350 _03215 BACOVA_03217: BACOVA_03217 - putative DNA-binding protein, at 304,828 to 305,436 _03217 Position (kb) 304 305Strain fitness (log2 ratio) -2 -1 0 1at 303.049 kb on + strand, within BACOVA_03214at 303.049 kb on + strand, within BACOVA_03214at 303.050 kb on - strand, within BACOVA_03214at 303.067 kb on - strand, within BACOVA_03214at 303.089 kb on + strand, within BACOVA_03214at 303.120 kb on - strand, within BACOVA_03214at 303.175 kb on - strand, within BACOVA_03214at 303.190 kb on + strand, within BACOVA_03214at 303.210 kb on - strand, within BACOVA_03214at 303.255 kb on - strand, within BACOVA_03214at 303.281 kb on + strand, within BACOVA_03214at 303.291 kb on - strand, within BACOVA_03214at 303.314 kb on - strand, within BACOVA_03214at 303.314 kb on - strand, within BACOVA_03214at 303.324 kb on - strand, within BACOVA_03214at 303.324 kb on - strand, within BACOVA_03214at 303.324 kb on - strand, within BACOVA_03214at 303.326 kb on + strand, within BACOVA_03214at 303.362 kb on - strand, within BACOVA_03214at 303.411 kb on - strand, within BACOVA_03214at 303.435 kb on - strand, within BACOVA_03214at 303.437 kb on + strand, within BACOVA_03214at 303.437 kb on + strand, within BACOVA_03214at 303.438 kb on - strand, within BACOVA_03214at 303.438 kb on - strand, within BACOVA_03214at 303.439 kb on + strand, within BACOVA_03214at 303.439 kb on + strand, within BACOVA_03214at 303.470 kb on + strand, within BACOVA_03214at 303.473 kb on - strand, within BACOVA_03214at 303.473 kb on - strand, within BACOVA_03214at 303.498 kb on - strand, within BACOVA_03214at 303.547 kb on - strand, within BACOVA_03214at 303.615 kb on + strand, within BACOVA_03214at 303.615 kb on + strand, within BACOVA_03214at 303.615 kb on + strand, within BACOVA_03214at 303.672 kb on - strand, within BACOVA_03214at 303.681 kb on + strand, within BACOVA_03214at 303.684 kb on - strand, within BACOVA_03214at 303.684 kb on - strand, within BACOVA_03214at 303.684 kb on - strand, within BACOVA_03214at 303.723 kb on - strand, within BACOVA_03214at 303.739 kb on + strand, within BACOVA_03214at 303.739 kb on + strand, within BACOVA_03214at 303.740 kb on - strand, within BACOVA_03214at 303.740 kb on - strand, within BACOVA_03214at 303.740 kb on - strand, within BACOVA_03214at 303.741 kb on + strand, within BACOVA_03214at 303.741 kb on + strand, within BACOVA_03214at 303.742 kb on - strand, within BACOVA_03214at 303.756 kb on + strand, within BACOVA_03214at 303.760 kb on - strand, within BACOVA_03214at 303.795 kb on - strand, within BACOVA_03214at 303.850 kb on + strand, within BACOVA_03214at 303.850 kb on + strand, within BACOVA_03214at 303.851 kb on - strand, within BACOVA_03214at 303.853 kb on + strand, within BACOVA_03214at 303.861 kb on - strand, within BACOVA_03214at 303.944 kb on - strandat 303.972 kb on - strandat 303.987 kb on - strandat 304.039 kb on + strandat 304.049 kb on - strandat 304.053 kb on + strandat 304.053 kb on + strandat 304.054 kb on - strandat 304.054 kb on - strandat 304.055 kb on + strandat 304.056 kb on - strandat 304.056 kb on - strandat 304.057 kb on + strandat 304.057 kb on + strandat 304.057 kb on + strandat 304.058 kb on - strandat 304.064 kb on - strandat 304.083 kb on + strand, within BACOVA_03216at 304.092 kb on + strand, within BACOVA_03216at 304.125 kb on + strand, within BACOVA_03216at 304.134 kb on + strand, within BACOVA_03216at 304.218 kb on + strandat 304.249 kb on - strandat 304.348 kb on + strandat 304.348 kb on + strandat 304.358 kb on + strandat 304.358 kb on + strandat 304.359 kb on - strandat 304.363 kb on + strandat 304.393 kb on - strandat 304.436 kb on - strandat 304.436 kb on - strandat 304.462 kb on + strandat 304.477 kb on - strandat 304.496 kb on - strandat 304.499 kb on + strandat 304.509 kb on + strandat 304.510 kb on - strandat 304.510 kb on - strandat 304.516 kb on + strandat 304.535 kb on + strandat 304.545 kb on + strandat 304.545 kb on + strandat 304.580 kb on + strandat 304.580 kb on + strandat 304.580 kb on + strandat 304.588 kb on - strandat 304.602 kb on + strandat 304.602 kb on + strandat 304.602 kb on + strandat 304.603 kb on - strandat 304.645 kb on - strandat 304.653 kb on - strandat 304.678 kb on + strandat 304.678 kb on + strandat 304.682 kb on - strandat 304.691 kb on - strandat 304.714 kb on - strandat 304.733 kb on + strandat 304.787 kb on + strandat 304.787 kb on + strandat 304.798 kb on - strandat 304.892 kb on - strand, within BACOVA_03217at 304.892 kb on - strand, within BACOVA_03217at 304.942 kb on + strand, within BACOVA_03217at 304.959 kb on + strand, within BACOVA_03217at 304.960 kb on - strand, within BACOVA_03217at 304.960 kb on - strand, within BACOVA_03217at 304.961 kb on + strand, within BACOVA_03217at 304.962 kb on - strand, within BACOVA_03217at 305.119 kb on + strand, within BACOVA_03217at 305.149 kb on + strand, within BACOVA_03217at 305.150 kb on - strand, within BACOVA_03217at 305.150 kb on - strand, within BACOVA_03217at 305.253 kb on + strand, within BACOVA_03217at 305.432 kb on + strandat 305.432 kb on + strandat 305.445 kb on + strandat 305.445 kb on + strandat 305.510 kb on + strandat 305.524 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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303,049 + BACOVA_03214 0.26 +0.5
303,049 + BACOVA_03214 0.26 -0.4
303,050 - BACOVA_03214 0.27 +0.1
303,067 - BACOVA_03214 0.28 +0.2
303,089 + BACOVA_03214 0.30 -0.2
303,120 - BACOVA_03214 0.32 -0.6
303,175 - BACOVA_03214 0.36 -0.4
303,190 + BACOVA_03214 0.37 -0.8
303,210 - BACOVA_03214 0.39 +1.0
303,255 - BACOVA_03214 0.42 +0.5
303,281 + BACOVA_03214 0.44 -0.3
303,291 - BACOVA_03214 0.45 -1.5
303,314 - BACOVA_03214 0.47 +0.0
303,314 - BACOVA_03214 0.47 +0.5
303,324 - BACOVA_03214 0.47 +1.0
303,324 - BACOVA_03214 0.47 +0.5
303,324 - BACOVA_03214 0.47 -2.6
303,326 + BACOVA_03214 0.48 -2.1
303,362 - BACOVA_03214 0.50 +0.2
303,411 - BACOVA_03214 0.54 -0.1
303,435 - BACOVA_03214 0.56 +0.2
303,437 + BACOVA_03214 0.56 +0.9
303,437 + BACOVA_03214 0.56 +0.4
303,438 - BACOVA_03214 0.56 -0.4
303,438 - BACOVA_03214 0.56 -2.1
303,439 + BACOVA_03214 0.56 +0.5
303,439 + BACOVA_03214 0.56 -1.7
303,470 + BACOVA_03214 0.59 -0.8
303,473 - BACOVA_03214 0.59 +0.5
303,473 - BACOVA_03214 0.59 -0.1
303,498 - BACOVA_03214 0.61 -0.7
303,547 - BACOVA_03214 0.64 +0.0
303,615 + BACOVA_03214 0.70 -0.4
303,615 + BACOVA_03214 0.70 +0.4
303,615 + BACOVA_03214 0.70 +0.7
303,672 - BACOVA_03214 0.74 +0.3
303,681 + BACOVA_03214 0.75 -0.4
303,684 - BACOVA_03214 0.75 +0.2
303,684 - BACOVA_03214 0.75 -0.2
303,684 - BACOVA_03214 0.75 -1.3
303,723 - BACOVA_03214 0.78 -0.6
303,739 + BACOVA_03214 0.79 +0.9
303,739 + BACOVA_03214 0.79 -1.3
303,740 - BACOVA_03214 0.79 -0.0
303,740 - BACOVA_03214 0.79 +0.6
303,740 - BACOVA_03214 0.79 -1.0
303,741 + BACOVA_03214 0.79 -0.0
303,741 + BACOVA_03214 0.79 -1.0
303,742 - BACOVA_03214 0.79 +0.7
303,756 + BACOVA_03214 0.80 +0.9
303,760 - BACOVA_03214 0.81 +0.3
303,795 - BACOVA_03214 0.83 +0.2
303,850 + BACOVA_03214 0.88 -0.8
303,850 + BACOVA_03214 0.88 +0.8
303,851 - BACOVA_03214 0.88 -0.2
303,853 + BACOVA_03214 0.88 +0.9
303,861 - BACOVA_03214 0.88 -1.3
303,944 - +0.1
303,972 - +0.0
303,987 - -0.3
304,039 + -0.7
304,049 - -0.7
304,053 + +0.2
304,053 + +0.5
304,054 - -0.8
304,054 - -0.3
304,055 + -0.6
304,056 - -1.1
304,056 - +0.1
304,057 + +0.1
304,057 + -0.6
304,057 + +0.1
304,058 - -0.5
304,064 - -0.1
304,083 + BACOVA_03216 0.13 -0.7
304,092 + BACOVA_03216 0.15 -1.2
304,125 + BACOVA_03216 0.21 -0.2
304,134 + BACOVA_03216 0.23 -0.5
304,218 + +0.6
304,249 - -0.9
304,348 + -1.1
304,348 + +0.6
304,358 + -0.2
304,358 + +0.6
304,359 - +0.0
304,363 + +0.6
304,393 - +0.5
304,436 - -0.4
304,436 - +0.3
304,462 + +0.1
304,477 - -0.1
304,496 - +0.2
304,499 + -0.2
304,509 + +0.7
304,510 - +1.1
304,510 - -0.6
304,516 + -0.8
304,535 + -0.2
304,545 + +0.2
304,545 + -0.2
304,580 + +0.9
304,580 + -0.1
304,580 + -1.5
304,588 - +0.4
304,602 + -1.1
304,602 + +0.6
304,602 + +0.9
304,603 - -1.7
304,645 - -0.6
304,653 - +0.2
304,678 + -1.9
304,678 + -1.0
304,682 - +1.6
304,691 - -0.8
304,714 - +0.9
304,733 + -0.3
304,787 + +0.1
304,787 + +1.0
304,798 - +1.6
304,892 - BACOVA_03217 0.11 +0.0
304,892 - BACOVA_03217 0.11 -1.4
304,942 + BACOVA_03217 0.19 -0.9
304,959 + BACOVA_03217 0.22 -0.0
304,960 - BACOVA_03217 0.22 -0.5
304,960 - BACOVA_03217 0.22 -0.4
304,961 + BACOVA_03217 0.22 -0.0
304,962 - BACOVA_03217 0.22 -1.8
305,119 + BACOVA_03217 0.48 -0.5
305,149 + BACOVA_03217 0.53 +0.3
305,150 - BACOVA_03217 0.53 -0.2
305,150 - BACOVA_03217 0.53 -0.6
305,253 + BACOVA_03217 0.70 -1.1
305,432 + -0.1
305,432 + -0.8
305,445 + +0.2
305,445 + -0.2
305,510 + -1.0
305,524 - +0.1

Or see this region's nucleotide sequence