Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02584 and BACOVA_02585 are separated by 12 nucleotides BACOVA_02585 and BACOVA_02586 are separated by 28 nucleotides BACOVA_02586 and BACOVA_02587 are separated by 27 nucleotides
BACOVA_02584: BACOVA_02584 - efflux ABC transporter, permease protein, at 349,865 to 352,243
_02584
BACOVA_02585: BACOVA_02585 - efflux ABC transporter, permease protein, at 352,256 to 354,652
_02585
BACOVA_02586: BACOVA_02586 - putative bacteriocin export ABC transporter, lactococcin 972 group, at 354,681 to 355,355
_02586
BACOVA_02587: BACOVA_02587 - efflux ABC transporter, permease protein, at 355,383 to 357,704
_02587
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -2
-1
0
1
2 at 351.350 kb on - strand, within BACOVA_02584 at 351.365 kb on + strand, within BACOVA_02584 at 351.371 kb on - strand, within BACOVA_02584 at 351.419 kb on + strand, within BACOVA_02584 at 351.420 kb on - strand, within BACOVA_02584 at 351.425 kb on - strand, within BACOVA_02584 at 351.546 kb on - strand, within BACOVA_02584 at 351.546 kb on - strand, within BACOVA_02584 at 351.547 kb on + strand, within BACOVA_02584 at 351.566 kb on - strand, within BACOVA_02584 at 351.630 kb on + strand, within BACOVA_02584 at 351.644 kb on + strand, within BACOVA_02584 at 351.656 kb on - strand, within BACOVA_02584 at 351.658 kb on + strand, within BACOVA_02584 at 351.658 kb on + strand, within BACOVA_02584 at 351.659 kb on - strand, within BACOVA_02584 at 351.659 kb on - strand, within BACOVA_02584 at 351.659 kb on - strand, within BACOVA_02584 at 351.702 kb on + strand, within BACOVA_02584 at 351.715 kb on - strand, within BACOVA_02584 at 351.715 kb on - strand, within BACOVA_02584 at 351.723 kb on + strand, within BACOVA_02584 at 351.723 kb on + strand, within BACOVA_02584 at 351.725 kb on + strand, within BACOVA_02584 at 351.761 kb on + strand, within BACOVA_02584 at 351.810 kb on - strand, within BACOVA_02584 at 351.890 kb on - strand, within BACOVA_02584 at 351.890 kb on - strand, within BACOVA_02584 at 351.891 kb on + strand, within BACOVA_02584 at 351.895 kb on + strand, within BACOVA_02584 at 351.901 kb on - strand, within BACOVA_02584 at 352.039 kb on - strand at 352.039 kb on - strand at 352.039 kb on - strand at 352.084 kb on - strand at 352.122 kb on + strand at 352.123 kb on - strand at 352.123 kb on - strand at 352.127 kb on - strand at 352.194 kb on + strand at 352.194 kb on + strand at 352.248 kb on - strand at 352.252 kb on + strand at 352.260 kb on + strand at 352.261 kb on - strand at 352.342 kb on - strand at 352.357 kb on + strand at 352.361 kb on - strand at 352.362 kb on + strand at 352.363 kb on - strand at 352.363 kb on - strand at 352.363 kb on - strand at 352.366 kb on + strand at 352.366 kb on + strand at 352.366 kb on + strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.370 kb on + strand at 352.387 kb on - strand at 352.394 kb on - strand at 352.416 kb on - strand at 352.444 kb on + strand at 352.505 kb on - strand, within BACOVA_02585 at 352.541 kb on - strand, within BACOVA_02585 at 352.541 kb on - strand, within BACOVA_02585 at 352.547 kb on + strand, within BACOVA_02585 at 352.547 kb on + strand, within BACOVA_02585 at 352.633 kb on - strand, within BACOVA_02585 at 352.639 kb on + strand, within BACOVA_02585 at 352.640 kb on - strand, within BACOVA_02585 at 352.662 kb on + strand, within BACOVA_02585 at 352.706 kb on - strand, within BACOVA_02585 at 352.709 kb on - strand, within BACOVA_02585 at 352.711 kb on - strand, within BACOVA_02585 at 352.735 kb on - strand, within BACOVA_02585 at 352.793 kb on - strand, within BACOVA_02585 at 352.808 kb on - strand, within BACOVA_02585 at 352.954 kb on + strand, within BACOVA_02585 at 352.973 kb on + strand, within BACOVA_02585 at 353.038 kb on + strand, within BACOVA_02585 at 353.039 kb on - strand, within BACOVA_02585 at 353.039 kb on - strand, within BACOVA_02585 at 353.042 kb on + strand, within BACOVA_02585 at 353.049 kb on + strand, within BACOVA_02585 at 353.051 kb on + strand, within BACOVA_02585 at 353.063 kb on + strand, within BACOVA_02585 at 353.064 kb on - strand, within BACOVA_02585 at 353.083 kb on + strand, within BACOVA_02585 at 353.083 kb on + strand, within BACOVA_02585 at 353.086 kb on - strand, within BACOVA_02585 at 353.086 kb on - strand, within BACOVA_02585 at 353.086 kb on - strand, within BACOVA_02585 at 353.110 kb on + strand, within BACOVA_02585 at 353.116 kb on + strand, within BACOVA_02585 at 353.154 kb on + strand, within BACOVA_02585 at 353.174 kb on - strand, within BACOVA_02585 at 353.229 kb on + strand, within BACOVA_02585 at 353.278 kb on - strand, within BACOVA_02585 at 353.298 kb on + strand, within BACOVA_02585 at 353.337 kb on + strand, within BACOVA_02585 at 353.404 kb on - strand, within BACOVA_02585 at 353.503 kb on + strand, within BACOVA_02585 at 353.503 kb on + strand, within BACOVA_02585 at 353.507 kb on + strand, within BACOVA_02585 at 353.507 kb on + strand, within BACOVA_02585 at 353.508 kb on - strand, within BACOVA_02585 at 353.546 kb on - strand, within BACOVA_02585 at 353.546 kb on - strand, within BACOVA_02585 at 353.573 kb on - strand, within BACOVA_02585 at 353.647 kb on + strand, within BACOVA_02585 at 353.653 kb on - strand, within BACOVA_02585 at 353.665 kb on + strand, within BACOVA_02585 at 353.665 kb on + strand, within BACOVA_02585 at 353.782 kb on + strand, within BACOVA_02585 at 353.784 kb on + strand, within BACOVA_02585 at 353.784 kb on + strand, within BACOVA_02585 at 353.785 kb on - strand, within BACOVA_02585 at 353.785 kb on - strand, within BACOVA_02585 at 353.789 kb on + strand, within BACOVA_02585 at 353.789 kb on + strand, within BACOVA_02585 at 353.790 kb on - strand, within BACOVA_02585 at 353.790 kb on - strand, within BACOVA_02585 at 353.803 kb on - strand, within BACOVA_02585 at 353.817 kb on + strand, within BACOVA_02585 at 353.858 kb on - strand, within BACOVA_02585 at 353.858 kb on - strand, within BACOVA_02585 at 353.863 kb on - strand, within BACOVA_02585 at 353.863 kb on - strand, within BACOVA_02585 at 353.981 kb on + strand, within BACOVA_02585 at 353.984 kb on - strand, within BACOVA_02585 at 353.984 kb on - strand, within BACOVA_02585 at 354.060 kb on + strand, within BACOVA_02585 at 354.060 kb on + strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.110 kb on + strand, within BACOVA_02585 at 354.114 kb on + strand, within BACOVA_02585 at 354.206 kb on - strand, within BACOVA_02585 at 354.219 kb on + strand, within BACOVA_02585 at 354.242 kb on + strand, within BACOVA_02585 at 354.242 kb on + strand, within BACOVA_02585 at 354.264 kb on - strand, within BACOVA_02585 at 354.266 kb on - strand, within BACOVA_02585 at 354.330 kb on - strand, within BACOVA_02585 at 354.402 kb on + strand, within BACOVA_02585 at 354.513 kb on - strand at 354.513 kb on - strand at 354.574 kb on - strand at 354.574 kb on - strand at 354.592 kb on + strand at 354.599 kb on - strand at 354.637 kb on - strand at 354.674 kb on + strand at 354.680 kb on + strand at 354.687 kb on - strand at 354.687 kb on - strand at 354.912 kb on - strand, within BACOVA_02586 at 355.008 kb on + strand, within BACOVA_02586 at 355.011 kb on - strand, within BACOVA_02586 at 355.017 kb on - strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.346 kb on + strand at 355.349 kb on + strand at 355.365 kb on - strand at 355.379 kb on + strand at 355.423 kb on + strand at 355.423 kb on + strand at 355.424 kb on - strand at 355.428 kb on + strand at 355.448 kb on + strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.451 kb on + strand at 355.452 kb on - strand at 355.495 kb on + strand at 355.522 kb on - strand at 355.555 kb on - strand at 355.601 kb on + strand at 355.627 kb on - strand, within BACOVA_02587
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 351,350 - BACOVA_02584 0.62 -0.9 351,365 + BACOVA_02584 0.63 +0.4 351,371 - BACOVA_02584 0.63 -0.0 351,419 + BACOVA_02584 0.65 +1.2 351,420 - BACOVA_02584 0.65 -0.5 351,425 - BACOVA_02584 0.66 +0.1 351,546 - BACOVA_02584 0.71 +0.5 351,546 - BACOVA_02584 0.71 +1.2 351,547 + BACOVA_02584 0.71 -0.5 351,566 - BACOVA_02584 0.72 -2.4 351,630 + BACOVA_02584 0.74 -0.9 351,644 + BACOVA_02584 0.75 -0.7 351,656 - BACOVA_02584 0.75 -0.0 351,658 + BACOVA_02584 0.75 -0.5 351,658 + BACOVA_02584 0.75 +1.2 351,659 - BACOVA_02584 0.75 +0.8 351,659 - BACOVA_02584 0.75 -0.7 351,659 - BACOVA_02584 0.75 +0.9 351,702 + BACOVA_02584 0.77 +0.7 351,715 - BACOVA_02584 0.78 +0.2 351,715 - BACOVA_02584 0.78 -0.0 351,723 + BACOVA_02584 0.78 +0.5 351,723 + BACOVA_02584 0.78 -0.1 351,725 + BACOVA_02584 0.78 +2.0 351,761 + BACOVA_02584 0.80 +0.1 351,810 - BACOVA_02584 0.82 -0.3 351,890 - BACOVA_02584 0.85 -0.3 351,890 - BACOVA_02584 0.85 +0.4 351,891 + BACOVA_02584 0.85 -1.3 351,895 + BACOVA_02584 0.85 -0.2 351,901 - BACOVA_02584 0.86 +0.1 352,039 - -0.1 352,039 - -1.6 352,039 - -0.5 352,084 - +0.7 352,122 + -1.0 352,123 - -0.9 352,123 - +1.7 352,127 - +0.2 352,194 + +0.7 352,194 + -1.9 352,248 - +0.3 352,252 + -1.2 352,260 + +0.4 352,261 - +0.3 352,342 - +0.4 352,357 + -0.3 352,361 - -0.3 352,362 + +0.6 352,363 - -0.7 352,363 - -1.9 352,363 - +0.6 352,366 + +0.8 352,366 + +0.5 352,366 + +0.6 352,367 - +0.1 352,367 - +0.4 352,367 - -0.3 352,367 - -0.8 352,367 - +0.3 352,370 + +0.7 352,387 - +0.4 352,394 - -0.1 352,416 - +0.5 352,444 + -1.2 352,505 - BACOVA_02585 0.10 -0.1 352,541 - BACOVA_02585 0.12 +0.7 352,541 - BACOVA_02585 0.12 -1.2 352,547 + BACOVA_02585 0.12 +0.4 352,547 + BACOVA_02585 0.12 -0.3 352,633 - BACOVA_02585 0.16 +0.4 352,639 + BACOVA_02585 0.16 +0.2 352,640 - BACOVA_02585 0.16 -0.7 352,662 + BACOVA_02585 0.17 +2.5 352,706 - BACOVA_02585 0.19 -0.4 352,709 - BACOVA_02585 0.19 -1.5 352,711 - BACOVA_02585 0.19 -0.4 352,735 - BACOVA_02585 0.20 -0.3 352,793 - BACOVA_02585 0.22 -0.8 352,808 - BACOVA_02585 0.23 -2.7 352,954 + BACOVA_02585 0.29 +0.9 352,973 + BACOVA_02585 0.30 -0.9 353,038 + BACOVA_02585 0.33 +0.7 353,039 - BACOVA_02585 0.33 +1.5 353,039 - BACOVA_02585 0.33 +0.1 353,042 + BACOVA_02585 0.33 +1.9 353,049 + BACOVA_02585 0.33 -1.4 353,051 + BACOVA_02585 0.33 +0.7 353,063 + BACOVA_02585 0.34 -0.4 353,064 - BACOVA_02585 0.34 -1.2 353,083 + BACOVA_02585 0.35 -0.7 353,083 + BACOVA_02585 0.35 +0.4 353,086 - BACOVA_02585 0.35 +1.7 353,086 - BACOVA_02585 0.35 -0.3 353,086 - BACOVA_02585 0.35 +0.2 353,110 + BACOVA_02585 0.36 +0.4 353,116 + BACOVA_02585 0.36 -0.9 353,154 + BACOVA_02585 0.37 -1.5 353,174 - BACOVA_02585 0.38 -0.3 353,229 + BACOVA_02585 0.41 -0.9 353,278 - BACOVA_02585 0.43 -1.2 353,298 + BACOVA_02585 0.43 -1.5 353,337 + BACOVA_02585 0.45 -1.4 353,404 - BACOVA_02585 0.48 -0.7 353,503 + BACOVA_02585 0.52 -0.5 353,503 + BACOVA_02585 0.52 -0.6 353,507 + BACOVA_02585 0.52 -1.3 353,507 + BACOVA_02585 0.52 +0.1 353,508 - BACOVA_02585 0.52 +0.3 353,546 - BACOVA_02585 0.54 +0.7 353,546 - BACOVA_02585 0.54 +0.1 353,573 - BACOVA_02585 0.55 +0.9 353,647 + BACOVA_02585 0.58 -0.5 353,653 - BACOVA_02585 0.58 -0.3 353,665 + BACOVA_02585 0.59 +0.1 353,665 + BACOVA_02585 0.59 +0.5 353,782 + BACOVA_02585 0.64 -1.2 353,784 + BACOVA_02585 0.64 +1.4 353,784 + BACOVA_02585 0.64 -0.2 353,785 - BACOVA_02585 0.64 -0.9 353,785 - BACOVA_02585 0.64 -0.8 353,789 + BACOVA_02585 0.64 -0.3 353,789 + BACOVA_02585 0.64 -0.7 353,790 - BACOVA_02585 0.64 -0.3 353,790 - BACOVA_02585 0.64 -1.9 353,803 - BACOVA_02585 0.65 -0.3 353,817 + BACOVA_02585 0.65 +0.7 353,858 - BACOVA_02585 0.67 -0.9 353,858 - BACOVA_02585 0.67 +0.5 353,863 - BACOVA_02585 0.67 +0.1 353,863 - BACOVA_02585 0.67 -0.1 353,981 + BACOVA_02585 0.72 +1.7 353,984 - BACOVA_02585 0.72 +1.0 353,984 - BACOVA_02585 0.72 -0.0 354,060 + BACOVA_02585 0.75 -0.9 354,060 + BACOVA_02585 0.75 -2.7 354,061 - BACOVA_02585 0.75 -0.2 354,061 - BACOVA_02585 0.75 -0.1 354,061 - BACOVA_02585 0.75 +0.7 354,110 + BACOVA_02585 0.77 -1.2 354,114 + BACOVA_02585 0.78 -0.2 354,206 - BACOVA_02585 0.81 -1.0 354,219 + BACOVA_02585 0.82 -1.2 354,242 + BACOVA_02585 0.83 -0.2 354,242 + BACOVA_02585 0.83 -0.0 354,264 - BACOVA_02585 0.84 -0.2 354,266 - BACOVA_02585 0.84 +0.7 354,330 - BACOVA_02585 0.87 +0.1 354,402 + BACOVA_02585 0.90 +0.7 354,513 - -0.1 354,513 - -0.2 354,574 - -0.0 354,574 - +0.2 354,592 + +1.3 354,599 - +0.8 354,637 - +0.1 354,674 + -0.3 354,680 + +0.8 354,687 - +0.3 354,687 - +0.4 354,912 - BACOVA_02586 0.34 +0.1 355,008 + BACOVA_02586 0.48 -0.2 355,011 - BACOVA_02586 0.49 +1.2 355,017 - BACOVA_02586 0.50 +0.8 355,055 + BACOVA_02586 0.55 +0.7 355,055 + BACOVA_02586 0.55 -0.0 355,346 + -1.3 355,349 + -1.2 355,365 - +0.3 355,379 + +1.2 355,423 + +0.3 355,423 + +0.3 355,424 - -0.5 355,428 + -0.6 355,448 + +0.8 355,449 - +0.8 355,449 - +0.2 355,449 - -0.6 355,451 + -0.2 355,452 - +0.2 355,495 + -0.2 355,522 - -0.3 355,555 - +0.4 355,601 + -0.7 355,627 - BACOVA_02587 0.11 +0.0
Or see this region's nucleotide sequence