Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02560 and BACOVA_02561 are separated by 74 nucleotides BACOVA_02561 and BACOVA_02562 are separated by 18 nucleotides BACOVA_02562 and BACOVA_02563 are separated by 90 nucleotides BACOVA_02563 and BACOVA_02564 are separated by 26 nucleotides
BACOVA_02560: BACOVA_02560 - mannitol dehydrogenase domain protein, at 326,517 to 327,956
_02560
BACOVA_02561: BACOVA_02561 - FHA domain protein, at 328,031 to 328,564
_02561
BACOVA_02562: BACOVA_02562 - sporulation and cell division repeat protein, at 328,583 to 329,668
_02562
BACOVA_02563: BACOVA_02563 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 329,759 to 330,307
_02563
BACOVA_02564: BACOVA_02564 - nucleotide sugar dehydrogenase, at 330,334 to 331,647
_02564
Position (kb) 328
329
330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 327.613 kb on - strand, within BACOVA_02560 at 327.645 kb on + strand, within BACOVA_02560 at 327.645 kb on + strand, within BACOVA_02560 at 327.683 kb on - strand, within BACOVA_02560 at 327.692 kb on - strand, within BACOVA_02560 at 327.708 kb on + strand, within BACOVA_02560 at 327.709 kb on - strand, within BACOVA_02560 at 327.713 kb on + strand, within BACOVA_02560 at 327.713 kb on + strand, within BACOVA_02560 at 327.714 kb on - strand, within BACOVA_02560 at 327.724 kb on + strand, within BACOVA_02560 at 327.725 kb on - strand, within BACOVA_02560 at 327.845 kb on + strand at 328.025 kb on + strand at 328.032 kb on + strand at 328.057 kb on + strand at 328.064 kb on - strand at 328.067 kb on - strand at 328.084 kb on + strand at 328.099 kb on + strand, within BACOVA_02561 at 328.104 kb on - strand, within BACOVA_02561 at 328.114 kb on + strand, within BACOVA_02561 at 328.114 kb on + strand, within BACOVA_02561 at 328.156 kb on + strand, within BACOVA_02561 at 328.157 kb on - strand, within BACOVA_02561 at 328.157 kb on - strand, within BACOVA_02561 at 328.170 kb on - strand, within BACOVA_02561 at 328.196 kb on - strand, within BACOVA_02561 at 328.199 kb on - strand, within BACOVA_02561 at 328.208 kb on - strand, within BACOVA_02561 at 328.241 kb on - strand, within BACOVA_02561 at 328.261 kb on + strand, within BACOVA_02561 at 328.265 kb on - strand, within BACOVA_02561 at 328.265 kb on - strand, within BACOVA_02561 at 328.322 kb on + strand, within BACOVA_02561 at 328.340 kb on + strand, within BACOVA_02561 at 328.361 kb on - strand, within BACOVA_02561 at 328.426 kb on + strand, within BACOVA_02561 at 328.484 kb on + strand, within BACOVA_02561 at 328.484 kb on + strand, within BACOVA_02561 at 328.507 kb on - strand, within BACOVA_02561 at 328.507 kb on - strand, within BACOVA_02561 at 328.507 kb on - strand, within BACOVA_02561 at 328.610 kb on - strand at 328.628 kb on + strand at 328.666 kb on + strand at 328.997 kb on - strand, within BACOVA_02562 at 329.034 kb on - strand, within BACOVA_02562 at 329.071 kb on - strand, within BACOVA_02562 at 329.127 kb on - strand, within BACOVA_02562 at 329.164 kb on - strand, within BACOVA_02562 at 329.180 kb on - strand, within BACOVA_02562 at 329.262 kb on - strand, within BACOVA_02562 at 329.301 kb on - strand, within BACOVA_02562 at 329.306 kb on - strand, within BACOVA_02562 at 329.338 kb on - strand, within BACOVA_02562 at 329.461 kb on - strand, within BACOVA_02562 at 329.473 kb on - strand, within BACOVA_02562 at 329.549 kb on - strand, within BACOVA_02562 at 329.580 kb on + strand at 329.697 kb on - strand at 329.697 kb on - strand at 330.329 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 327,613 - BACOVA_02560 0.76 -2.0 327,645 + BACOVA_02560 0.78 -0.9 327,645 + BACOVA_02560 0.78 -1.8 327,683 - BACOVA_02560 0.81 -2.1 327,692 - BACOVA_02560 0.82 -1.7 327,708 + BACOVA_02560 0.83 -1.9 327,709 - BACOVA_02560 0.83 -3.7 327,713 + BACOVA_02560 0.83 -1.4 327,713 + BACOVA_02560 0.83 -1.5 327,714 - BACOVA_02560 0.83 -2.2 327,724 + BACOVA_02560 0.84 -3.0 327,725 - BACOVA_02560 0.84 -0.9 327,845 + -2.2 328,025 + +1.3 328,032 + +2.4 328,057 + -0.1 328,064 - -0.2 328,067 - -0.9 328,084 + +0.4 328,099 + BACOVA_02561 0.13 +0.7 328,104 - BACOVA_02561 0.14 +1.1 328,114 + BACOVA_02561 0.16 -1.7 328,114 + BACOVA_02561 0.16 +1.7 328,156 + BACOVA_02561 0.23 -0.2 328,157 - BACOVA_02561 0.24 -1.2 328,157 - BACOVA_02561 0.24 -0.7 328,170 - BACOVA_02561 0.26 -0.0 328,196 - BACOVA_02561 0.31 +1.2 328,199 - BACOVA_02561 0.31 -1.2 328,208 - BACOVA_02561 0.33 -0.5 328,241 - BACOVA_02561 0.39 -0.2 328,261 + BACOVA_02561 0.43 -0.9 328,265 - BACOVA_02561 0.44 +0.1 328,265 - BACOVA_02561 0.44 -0.3 328,322 + BACOVA_02561 0.54 -1.1 328,340 + BACOVA_02561 0.58 +0.4 328,361 - BACOVA_02561 0.62 -0.1 328,426 + BACOVA_02561 0.74 +1.1 328,484 + BACOVA_02561 0.85 +0.5 328,484 + BACOVA_02561 0.85 +0.7 328,507 - BACOVA_02561 0.89 -0.0 328,507 - BACOVA_02561 0.89 -0.3 328,507 - BACOVA_02561 0.89 +0.7 328,610 - +0.4 328,628 + +0.1 328,666 + +0.9 328,997 - BACOVA_02562 0.38 +0.7 329,034 - BACOVA_02562 0.42 +0.3 329,071 - BACOVA_02562 0.45 -0.5 329,127 - BACOVA_02562 0.50 -1.1 329,164 - BACOVA_02562 0.53 -0.9 329,180 - BACOVA_02562 0.55 +0.2 329,262 - BACOVA_02562 0.63 +0.1 329,301 - BACOVA_02562 0.66 -0.5 329,306 - BACOVA_02562 0.67 -1.8 329,338 - BACOVA_02562 0.70 +0.8 329,461 - BACOVA_02562 0.81 +1.5 329,473 - BACOVA_02562 0.82 -1.1 329,549 - BACOVA_02562 0.89 +0.3 329,580 + +1.1 329,697 - -0.4 329,697 - +0.7 330,329 + -2.9
Or see this region's nucleotide sequence