Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02231 and BACOVA_02232 are separated by 200 nucleotides BACOVA_02232 and BACOVA_02233 are separated by 29 nucleotides BACOVA_02233 and BACOVA_02235 are separated by 154 nucleotides BACOVA_02235 and BACOVA_02234 overlap by 24 nucleotides BACOVA_02234 and BACOVA_02236 are separated by 7 nucleotides BACOVA_02236 and BACOVA_02237 are separated by 24 nucleotides
BACOVA_02231: BACOVA_02231 - VirE N-terminal domain protein, at 13,838 to 14,431
_02231
BACOVA_02232: BACOVA_02232 - hypothetical protein, at 14,632 to 14,772
_02232
BACOVA_02233: BACOVA_02233 - hypothetical protein, at 14,802 to 14,906
_02233
BACOVA_02235: BACOVA_02235 - hypothetical protein, at 15,061 to 15,168
_02235
BACOVA_02234: BACOVA_02234 - positive regulator of sigma(E), RseC/MucC, at 15,145 to 15,570
_02234
BACOVA_02236: BACOVA_02236 - electron transport complex, RnfABCDGE type, B subunit, at 15,578 to 16,531
_02236
BACOVA_02237: BACOVA_02237 - electron transport complex, RnfABCDGE type, C subunit, at 16,556 to 17,893
_02237
Position (kb) 15
16 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 14.168 kb on + strand, within BACOVA_02231 at 14.241 kb on + strand, within BACOVA_02231 at 14.242 kb on - strand, within BACOVA_02231 at 14.271 kb on - strand, within BACOVA_02231 at 14.271 kb on - strand, within BACOVA_02231 at 14.273 kb on - strand, within BACOVA_02231 at 14.273 kb on - strand, within BACOVA_02231 at 14.289 kb on - strand, within BACOVA_02231 at 14.326 kb on + strand, within BACOVA_02231 at 14.327 kb on - strand, within BACOVA_02231 at 14.327 kb on - strand, within BACOVA_02231 at 14.422 kb on + strand at 14.436 kb on + strand at 14.476 kb on + strand at 14.507 kb on + strand at 14.539 kb on + strand at 14.543 kb on - strand at 14.545 kb on + strand at 14.546 kb on - strand at 14.546 kb on - strand at 14.568 kb on + strand at 14.569 kb on - strand at 14.671 kb on + strand, within BACOVA_02232 at 14.671 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.677 kb on - strand, within BACOVA_02232 at 14.713 kb on + strand, within BACOVA_02232 at 14.714 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.760 kb on - strand at 14.817 kb on + strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.883 kb on + strand, within BACOVA_02233 at 14.897 kb on - strand at 14.979 kb on + strand at 15.016 kb on - strand at 15.102 kb on + strand, within BACOVA_02235 at 15.157 kb on - strand at 15.160 kb on - strand at 15.162 kb on - strand at 15.162 kb on - strand at 15.188 kb on + strand, within BACOVA_02234 at 15.243 kb on + strand, within BACOVA_02234 at 15.291 kb on - strand, within BACOVA_02234 at 15.295 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.320 kb on - strand, within BACOVA_02234 at 15.405 kb on - strand, within BACOVA_02234 at 15.487 kb on - strand, within BACOVA_02234 at 15.493 kb on + strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.561 kb on - strand at 15.569 kb on - strand at 15.569 kb on - strand at 15.578 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.644 kb on + strand at 15.644 kb on + strand at 15.880 kb on - strand, within BACOVA_02236 at 15.889 kb on - strand, within BACOVA_02236 at 15.907 kb on + strand, within BACOVA_02236 at 15.908 kb on - strand, within BACOVA_02236 at 15.922 kb on + strand, within BACOVA_02236 at 15.972 kb on - strand, within BACOVA_02236 at 15.991 kb on + strand, within BACOVA_02236 at 15.992 kb on - strand, within BACOVA_02236 at 15.995 kb on + strand, within BACOVA_02236 at 16.097 kb on - strand, within BACOVA_02236 at 16.179 kb on - strand, within BACOVA_02236 at 16.181 kb on - strand, within BACOVA_02236 at 16.196 kb on - strand, within BACOVA_02236 at 16.219 kb on + strand, within BACOVA_02236 at 16.219 kb on + strand, within BACOVA_02236 at 16.229 kb on - strand, within BACOVA_02236 at 16.241 kb on - strand, within BACOVA_02236 at 16.308 kb on - strand, within BACOVA_02236 at 16.445 kb on - strand at 16.445 kb on - strand at 16.496 kb on + strand at 16.530 kb on - strand at 16.530 kb on - strand at 16.530 kb on - strand at 16.545 kb on + strand at 16.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 14,168 + BACOVA_02231 0.56 +0.6 14,241 + BACOVA_02231 0.68 +0.1 14,242 - BACOVA_02231 0.68 +0.5 14,271 - BACOVA_02231 0.73 +0.3 14,271 - BACOVA_02231 0.73 -0.7 14,273 - BACOVA_02231 0.73 +0.1 14,273 - BACOVA_02231 0.73 +0.1 14,289 - BACOVA_02231 0.76 +0.7 14,326 + BACOVA_02231 0.82 +0.5 14,327 - BACOVA_02231 0.82 +0.5 14,327 - BACOVA_02231 0.82 -0.9 14,422 + +1.4 14,436 + +0.7 14,476 + +0.7 14,507 + +0.8 14,539 + +0.8 14,543 - -1.5 14,545 + +0.6 14,546 - +0.6 14,546 - -0.3 14,568 + -0.8 14,569 - +0.2 14,671 + BACOVA_02232 0.28 -0.2 14,671 + BACOVA_02232 0.28 +0.8 14,673 + BACOVA_02232 0.29 -0.1 14,673 + BACOVA_02232 0.29 -1.2 14,677 - BACOVA_02232 0.32 -0.0 14,713 + BACOVA_02232 0.57 -1.8 14,714 - BACOVA_02232 0.58 +0.4 14,718 - BACOVA_02232 0.61 -0.8 14,718 - BACOVA_02232 0.61 +2.4 14,718 - BACOVA_02232 0.61 -0.6 14,718 - BACOVA_02232 0.61 -0.9 14,760 - -2.1 14,817 + BACOVA_02233 0.14 -0.8 14,872 - BACOVA_02233 0.67 +0.7 14,872 - BACOVA_02233 0.67 -0.2 14,883 + BACOVA_02233 0.77 +0.4 14,897 - -0.1 14,979 + +1.4 15,016 - -0.2 15,102 + BACOVA_02235 0.38 -0.4 15,157 - -2.2 15,160 - -2.9 15,162 - -3.5 15,162 - -1.6 15,188 + BACOVA_02234 0.10 -2.3 15,243 + BACOVA_02234 0.23 -2.5 15,291 - BACOVA_02234 0.34 -2.2 15,295 - BACOVA_02234 0.35 -1.8 15,300 - BACOVA_02234 0.36 -2.3 15,300 - BACOVA_02234 0.36 -1.1 15,300 - BACOVA_02234 0.36 -1.3 15,320 - BACOVA_02234 0.41 -1.6 15,405 - BACOVA_02234 0.61 -2.6 15,487 - BACOVA_02234 0.80 -2.1 15,493 + BACOVA_02234 0.82 -0.3 15,507 - BACOVA_02234 0.85 -3.0 15,507 - BACOVA_02234 0.85 -1.6 15,561 - -1.1 15,569 - -4.8 15,569 - -1.1 15,578 - -0.6 15,617 - -0.9 15,617 - -1.1 15,617 - -1.6 15,644 + +0.7 15,644 + +0.5 15,880 - BACOVA_02236 0.32 -1.5 15,889 - BACOVA_02236 0.33 -0.1 15,907 + BACOVA_02236 0.34 -0.6 15,908 - BACOVA_02236 0.35 -1.8 15,922 + BACOVA_02236 0.36 -0.3 15,972 - BACOVA_02236 0.41 -2.2 15,991 + BACOVA_02236 0.43 -0.3 15,992 - BACOVA_02236 0.43 -4.2 15,995 + BACOVA_02236 0.44 +0.7 16,097 - BACOVA_02236 0.54 -1.9 16,179 - BACOVA_02236 0.63 -2.0 16,181 - BACOVA_02236 0.63 -2.1 16,196 - BACOVA_02236 0.65 -2.3 16,219 + BACOVA_02236 0.67 -0.9 16,219 + BACOVA_02236 0.67 -1.6 16,229 - BACOVA_02236 0.68 -1.5 16,241 - BACOVA_02236 0.69 -2.0 16,308 - BACOVA_02236 0.77 -2.0 16,445 - -1.9 16,445 - -1.3 16,496 + -0.8 16,530 - -2.0 16,530 - -2.7 16,530 - -1.1 16,545 + -1.0 16,555 + -1.8
Or see this region's nucleotide sequence