Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02110

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02109 and BACOVA_02110 are separated by 78 nucleotidesBACOVA_02110 and BACOVA_02111 are separated by 50 nucleotides BACOVA_02109: BACOVA_02109 - glycosyl hydrolase family 3 N-terminal domain protein, at 447,363 to 449,816 _02109 BACOVA_02110: BACOVA_02110 - glycosyl hydrolase family 3 N-terminal domain protein, at 449,895 to 452,102 _02110 BACOVA_02111: BACOVA_02111 - hypothetical protein, at 452,153 to 453,802 _02111 Position (kb) 449 450 451 452 453Strain fitness (log2 ratio) -2 -1 0 1 2 3at 448.898 kb on + strand, within BACOVA_02109at 448.899 kb on - strand, within BACOVA_02109at 448.933 kb on - strand, within BACOVA_02109at 448.976 kb on + strand, within BACOVA_02109at 449.003 kb on + strand, within BACOVA_02109at 449.064 kb on + strand, within BACOVA_02109at 449.090 kb on + strand, within BACOVA_02109at 449.091 kb on - strand, within BACOVA_02109at 449.127 kb on - strand, within BACOVA_02109at 449.138 kb on + strand, within BACOVA_02109at 449.139 kb on - strand, within BACOVA_02109at 449.173 kb on + strand, within BACOVA_02109at 449.173 kb on + strand, within BACOVA_02109at 449.174 kb on - strand, within BACOVA_02109at 449.174 kb on - strand, within BACOVA_02109at 449.234 kb on - strand, within BACOVA_02109at 449.250 kb on - strand, within BACOVA_02109at 449.250 kb on - strand, within BACOVA_02109at 449.259 kb on + strand, within BACOVA_02109at 449.259 kb on + strand, within BACOVA_02109at 449.357 kb on - strand, within BACOVA_02109at 449.357 kb on - strand, within BACOVA_02109at 449.383 kb on + strand, within BACOVA_02109at 449.383 kb on + strand, within BACOVA_02109at 449.384 kb on - strand, within BACOVA_02109at 449.384 kb on - strand, within BACOVA_02109at 449.434 kb on + strand, within BACOVA_02109at 449.434 kb on + strand, within BACOVA_02109at 449.438 kb on + strand, within BACOVA_02109at 449.438 kb on + strand, within BACOVA_02109at 449.439 kb on - strand, within BACOVA_02109at 449.510 kb on + strand, within BACOVA_02109at 449.510 kb on + strand, within BACOVA_02109at 449.513 kb on - strand, within BACOVA_02109at 449.518 kb on - strand, within BACOVA_02109at 449.560 kb on + strand, within BACOVA_02109at 449.560 kb on + strand, within BACOVA_02109at 449.562 kb on + strand, within BACOVA_02109at 449.562 kb on + strand, within BACOVA_02109at 449.563 kb on - strand, within BACOVA_02109at 449.563 kb on - strand, within BACOVA_02109at 449.563 kb on - strand, within BACOVA_02109at 449.563 kb on - strand, within BACOVA_02109at 449.586 kb on - strandat 449.675 kb on + strandat 449.676 kb on - strandat 449.678 kb on - strandat 449.682 kb on + strandat 449.709 kb on + strandat 449.764 kb on - strandat 449.766 kb on + strandat 449.766 kb on + strandat 449.767 kb on - strandat 449.767 kb on - strandat 449.767 kb on - strandat 449.767 kb on - strandat 449.783 kb on + strandat 449.783 kb on + strandat 449.784 kb on - strandat 449.787 kb on + strandat 449.787 kb on + strandat 449.787 kb on + strandat 449.788 kb on - strandat 449.833 kb on + strandat 449.833 kb on + strandat 449.835 kb on + strandat 449.836 kb on - strandat 449.838 kb on + strandat 449.839 kb on - strandat 449.856 kb on + strandat 449.857 kb on - strandat 449.860 kb on + strandat 449.901 kb on + strandat 449.902 kb on - strandat 449.915 kb on + strandat 449.945 kb on - strandat 449.945 kb on - strandat 449.970 kb on - strandat 450.092 kb on + strandat 450.093 kb on - strandat 450.100 kb on + strandat 450.200 kb on + strand, within BACOVA_02110at 450.226 kb on + strand, within BACOVA_02110at 450.267 kb on + strand, within BACOVA_02110at 450.284 kb on + strand, within BACOVA_02110at 450.284 kb on + strand, within BACOVA_02110at 450.291 kb on - strand, within BACOVA_02110at 450.293 kb on - strand, within BACOVA_02110at 450.329 kb on + strand, within BACOVA_02110at 450.331 kb on + strand, within BACOVA_02110at 450.334 kb on + strand, within BACOVA_02110at 450.335 kb on - strand, within BACOVA_02110at 450.335 kb on - strand, within BACOVA_02110at 450.335 kb on - strand, within BACOVA_02110at 450.358 kb on + strand, within BACOVA_02110at 450.376 kb on - strand, within BACOVA_02110at 450.395 kb on + strand, within BACOVA_02110at 450.435 kb on + strand, within BACOVA_02110at 450.436 kb on - strand, within BACOVA_02110at 450.460 kb on - strand, within BACOVA_02110at 450.490 kb on - strand, within BACOVA_02110at 450.524 kb on + strand, within BACOVA_02110at 450.525 kb on - strand, within BACOVA_02110at 450.527 kb on + strand, within BACOVA_02110at 450.528 kb on - strand, within BACOVA_02110at 450.528 kb on - strand, within BACOVA_02110at 450.728 kb on - strand, within BACOVA_02110at 450.728 kb on - strand, within BACOVA_02110at 450.732 kb on + strand, within BACOVA_02110at 450.773 kb on - strand, within BACOVA_02110at 450.856 kb on - strand, within BACOVA_02110at 450.878 kb on + strand, within BACOVA_02110at 450.879 kb on - strand, within BACOVA_02110at 450.885 kb on + strand, within BACOVA_02110at 450.885 kb on + strand, within BACOVA_02110at 450.996 kb on - strand, within BACOVA_02110at 450.997 kb on + strand, within BACOVA_02110at 450.997 kb on + strand, within BACOVA_02110at 451.039 kb on - strand, within BACOVA_02110at 451.079 kb on + strand, within BACOVA_02110at 451.080 kb on - strand, within BACOVA_02110at 451.089 kb on + strand, within BACOVA_02110at 451.090 kb on - strand, within BACOVA_02110at 451.203 kb on + strand, within BACOVA_02110at 451.263 kb on + strand, within BACOVA_02110at 451.263 kb on + strand, within BACOVA_02110at 451.264 kb on - strand, within BACOVA_02110at 451.280 kb on + strand, within BACOVA_02110at 451.281 kb on - strand, within BACOVA_02110at 451.282 kb on + strand, within BACOVA_02110at 451.283 kb on - strand, within BACOVA_02110at 451.374 kb on + strand, within BACOVA_02110at 451.374 kb on + strand, within BACOVA_02110at 451.375 kb on - strand, within BACOVA_02110at 451.382 kb on + strand, within BACOVA_02110at 451.420 kb on + strand, within BACOVA_02110at 451.452 kb on + strand, within BACOVA_02110at 451.452 kb on + strand, within BACOVA_02110at 451.452 kb on + strand, within BACOVA_02110at 451.452 kb on + strand, within BACOVA_02110at 451.457 kb on - strand, within BACOVA_02110at 451.496 kb on + strand, within BACOVA_02110at 451.497 kb on - strand, within BACOVA_02110at 451.547 kb on + strand, within BACOVA_02110at 451.547 kb on + strand, within BACOVA_02110at 451.547 kb on + strand, within BACOVA_02110at 451.548 kb on - strand, within BACOVA_02110at 451.549 kb on + strand, within BACOVA_02110at 451.564 kb on + strand, within BACOVA_02110at 451.565 kb on - strand, within BACOVA_02110at 451.565 kb on - strand, within BACOVA_02110at 451.575 kb on + strand, within BACOVA_02110at 451.681 kb on - strand, within BACOVA_02110at 451.726 kb on + strand, within BACOVA_02110at 451.727 kb on - strand, within BACOVA_02110at 451.727 kb on - strand, within BACOVA_02110at 451.728 kb on + strand, within BACOVA_02110at 451.728 kb on + strand, within BACOVA_02110at 451.728 kb on + strand, within BACOVA_02110at 451.728 kb on + strand, within BACOVA_02110at 451.728 kb on + strand, within BACOVA_02110at 451.729 kb on - strand, within BACOVA_02110at 451.729 kb on - strand, within BACOVA_02110at 451.729 kb on - strand, within BACOVA_02110at 451.729 kb on - strand, within BACOVA_02110at 451.749 kb on - strand, within BACOVA_02110at 451.814 kb on + strand, within BACOVA_02110at 451.814 kb on + strand, within BACOVA_02110at 451.815 kb on - strand, within BACOVA_02110at 451.815 kb on - strand, within BACOVA_02110at 451.815 kb on - strand, within BACOVA_02110at 451.817 kb on + strand, within BACOVA_02110at 451.834 kb on - strand, within BACOVA_02110at 451.908 kb on - strandat 451.922 kb on + strandat 451.923 kb on - strandat 451.933 kb on - strandat 452.013 kb on - strandat 452.014 kb on + strandat 452.014 kb on + strandat 452.025 kb on - strandat 452.119 kb on + strandat 452.120 kb on - strandat 452.132 kb on + strandat 452.155 kb on - strandat 452.155 kb on - strandat 452.257 kb on + strandat 452.257 kb on + strandat 452.274 kb on + strandat 452.275 kb on - strandat 452.275 kb on - strandat 452.275 kb on - strandat 452.275 kb on - strandat 452.315 kb on - strandat 452.317 kb on - strandat 452.372 kb on + strand, within BACOVA_02111at 452.372 kb on + strand, within BACOVA_02111at 452.386 kb on + strand, within BACOVA_02111at 452.422 kb on + strand, within BACOVA_02111at 452.423 kb on - strand, within BACOVA_02111at 452.423 kb on - strand, within BACOVA_02111at 452.425 kb on - strand, within BACOVA_02111at 452.428 kb on + strand, within BACOVA_02111at 452.446 kb on + strand, within BACOVA_02111at 452.518 kb on + strand, within BACOVA_02111at 452.519 kb on - strand, within BACOVA_02111at 452.519 kb on - strand, within BACOVA_02111at 452.524 kb on + strand, within BACOVA_02111at 452.549 kb on + strand, within BACOVA_02111at 452.556 kb on + strand, within BACOVA_02111at 452.613 kb on + strand, within BACOVA_02111at 452.613 kb on - strand, within BACOVA_02111at 452.614 kb on - strand, within BACOVA_02111at 452.643 kb on + strand, within BACOVA_02111at 452.722 kb on - strand, within BACOVA_02111at 452.864 kb on + strand, within BACOVA_02111at 452.864 kb on + strand, within BACOVA_02111at 452.878 kb on + strand, within BACOVA_02111at 452.920 kb on - strand, within BACOVA_02111at 452.924 kb on - strand, within BACOVA_02111at 452.941 kb on + strand, within BACOVA_02111at 452.942 kb on - strand, within BACOVA_02111at 452.947 kb on + strand, within BACOVA_02111at 452.948 kb on - strand, within BACOVA_02111at 452.969 kb on + strand, within BACOVA_02111at 453.003 kb on + strand, within BACOVA_02111at 453.003 kb on + strand, within BACOVA_02111at 453.004 kb on - strand, within BACOVA_02111at 453.004 kb on - strand, within BACOVA_02111at 453.005 kb on + strand, within BACOVA_02111at 453.006 kb on - strand, within BACOVA_02111at 453.006 kb on - strand, within BACOVA_02111at 453.006 kb on - strand, within BACOVA_02111at 453.076 kb on - strand, within BACOVA_02111at 453.078 kb on + strand, within BACOVA_02111at 453.083 kb on + strand, within BACOVA_02111at 453.083 kb on + strand, within BACOVA_02111at 453.083 kb on + strand, within BACOVA_02111at 453.084 kb on - strand, within BACOVA_02111at 453.084 kb on - strand, within BACOVA_02111at 453.094 kb on - strand, within BACOVA_02111at 453.094 kb on - strand, within BACOVA_02111

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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448,898 + BACOVA_02109 0.63 -0.3
448,899 - BACOVA_02109 0.63 -0.1
448,933 - BACOVA_02109 0.64 -1.3
448,976 + BACOVA_02109 0.66 -0.2
449,003 + BACOVA_02109 0.67 -0.1
449,064 + BACOVA_02109 0.69 -0.2
449,090 + BACOVA_02109 0.70 +0.8
449,091 - BACOVA_02109 0.70 -0.7
449,127 - BACOVA_02109 0.72 -0.9
449,138 + BACOVA_02109 0.72 +0.2
449,139 - BACOVA_02109 0.72 -1.0
449,173 + BACOVA_02109 0.74 +0.5
449,173 + BACOVA_02109 0.74 +0.2
449,174 - BACOVA_02109 0.74 -0.3
449,174 - BACOVA_02109 0.74 +0.1
449,234 - BACOVA_02109 0.76 +0.9
449,250 - BACOVA_02109 0.77 +0.1
449,250 - BACOVA_02109 0.77 +0.4
449,259 + BACOVA_02109 0.77 -1.1
449,259 + BACOVA_02109 0.77 -0.5
449,357 - BACOVA_02109 0.81 +0.7
449,357 - BACOVA_02109 0.81 +0.0
449,383 + BACOVA_02109 0.82 -0.0
449,383 + BACOVA_02109 0.82 -0.8
449,384 - BACOVA_02109 0.82 +0.2
449,384 - BACOVA_02109 0.82 -1.0
449,434 + BACOVA_02109 0.84 -0.5
449,434 + BACOVA_02109 0.84 -0.0
449,438 + BACOVA_02109 0.85 -0.3
449,438 + BACOVA_02109 0.85 +0.9
449,439 - BACOVA_02109 0.85 -0.1
449,510 + BACOVA_02109 0.87 -0.3
449,510 + BACOVA_02109 0.87 +0.3
449,513 - BACOVA_02109 0.88 +0.6
449,518 - BACOVA_02109 0.88 +0.6
449,560 + BACOVA_02109 0.90 +0.2
449,560 + BACOVA_02109 0.90 -0.1
449,562 + BACOVA_02109 0.90 -1.1
449,562 + BACOVA_02109 0.90 -0.1
449,563 - BACOVA_02109 0.90 -0.4
449,563 - BACOVA_02109 0.90 +0.6
449,563 - BACOVA_02109 0.90 +2.2
449,563 - BACOVA_02109 0.90 -0.6
449,586 - +1.2
449,675 + -0.2
449,676 - -0.5
449,678 - -0.1
449,682 + -0.6
449,709 + +0.6
449,764 - +0.3
449,766 + +0.1
449,766 + +0.3
449,767 - +0.4
449,767 - -1.6
449,767 - +0.1
449,767 - -0.3
449,783 + -0.5
449,783 + -0.7
449,784 - +2.1
449,787 + -1.1
449,787 + -0.5
449,787 + -0.0
449,788 - +0.4
449,833 + -0.7
449,833 + -0.1
449,835 + +0.6
449,836 - +1.1
449,838 + -0.2
449,839 - +0.2
449,856 + +0.4
449,857 - -0.7
449,860 + -0.7
449,901 + -0.4
449,902 - +0.4
449,915 + -0.9
449,945 - -0.4
449,945 - -0.9
449,970 - -0.0
450,092 + +0.4
450,093 - -0.7
450,100 + -0.2
450,200 + BACOVA_02110 0.14 +0.6
450,226 + BACOVA_02110 0.15 -1.6
450,267 + BACOVA_02110 0.17 +0.5
450,284 + BACOVA_02110 0.18 +0.4
450,284 + BACOVA_02110 0.18 +0.8
450,291 - BACOVA_02110 0.18 -0.2
450,293 - BACOVA_02110 0.18 -0.5
450,329 + BACOVA_02110 0.20 +0.4
450,331 + BACOVA_02110 0.20 +0.2
450,334 + BACOVA_02110 0.20 -0.1
450,335 - BACOVA_02110 0.20 -1.7
450,335 - BACOVA_02110 0.20 -0.2
450,335 - BACOVA_02110 0.20 -0.4
450,358 + BACOVA_02110 0.21 +0.5
450,376 - BACOVA_02110 0.22 -0.4
450,395 + BACOVA_02110 0.23 +0.5
450,435 + BACOVA_02110 0.24 -0.1
450,436 - BACOVA_02110 0.25 -1.1
450,460 - BACOVA_02110 0.26 +0.1
450,490 - BACOVA_02110 0.27 +0.6
450,524 + BACOVA_02110 0.28 +0.6
450,525 - BACOVA_02110 0.29 -0.8
450,527 + BACOVA_02110 0.29 +0.1
450,528 - BACOVA_02110 0.29 +0.2
450,528 - BACOVA_02110 0.29 -0.6
450,728 - BACOVA_02110 0.38 -0.4
450,728 - BACOVA_02110 0.38 -0.3
450,732 + BACOVA_02110 0.38 +0.0
450,773 - BACOVA_02110 0.40 +0.3
450,856 - BACOVA_02110 0.44 -0.7
450,878 + BACOVA_02110 0.45 +0.0
450,879 - BACOVA_02110 0.45 -0.9
450,885 + BACOVA_02110 0.45 -0.4
450,885 + BACOVA_02110 0.45 -0.2
450,996 - BACOVA_02110 0.50 +0.5
450,997 + BACOVA_02110 0.50 -0.1
450,997 + BACOVA_02110 0.50 -0.3
451,039 - BACOVA_02110 0.52 -0.5
451,079 + BACOVA_02110 0.54 +0.6
451,080 - BACOVA_02110 0.54 +0.0
451,089 + BACOVA_02110 0.54 +0.6
451,090 - BACOVA_02110 0.54 +1.1
451,203 + BACOVA_02110 0.59 +0.4
451,263 + BACOVA_02110 0.62 +0.6
451,263 + BACOVA_02110 0.62 -0.1
451,264 - BACOVA_02110 0.62 +0.5
451,280 + BACOVA_02110 0.63 -2.1
451,281 - BACOVA_02110 0.63 -0.5
451,282 + BACOVA_02110 0.63 +0.2
451,283 - BACOVA_02110 0.63 -0.7
451,374 + BACOVA_02110 0.67 -0.1
451,374 + BACOVA_02110 0.67 -0.3
451,375 - BACOVA_02110 0.67 +0.3
451,382 + BACOVA_02110 0.67 -0.3
451,420 + BACOVA_02110 0.69 +0.3
451,452 + BACOVA_02110 0.71 +0.3
451,452 + BACOVA_02110 0.71 +0.7
451,452 + BACOVA_02110 0.71 -0.8
451,452 + BACOVA_02110 0.71 -0.6
451,457 - BACOVA_02110 0.71 -0.1
451,496 + BACOVA_02110 0.73 -0.2
451,497 - BACOVA_02110 0.73 +0.1
451,547 + BACOVA_02110 0.75 +0.5
451,547 + BACOVA_02110 0.75 +0.1
451,547 + BACOVA_02110 0.75 +0.4
451,548 - BACOVA_02110 0.75 +0.0
451,549 + BACOVA_02110 0.75 +0.6
451,564 + BACOVA_02110 0.76 +1.8
451,565 - BACOVA_02110 0.76 -0.5
451,565 - BACOVA_02110 0.76 +1.4
451,575 + BACOVA_02110 0.76 -0.1
451,681 - BACOVA_02110 0.81 +0.1
451,726 + BACOVA_02110 0.83 -1.6
451,727 - BACOVA_02110 0.83 +3.3
451,727 - BACOVA_02110 0.83 +0.9
451,728 + BACOVA_02110 0.83 +0.1
451,728 + BACOVA_02110 0.83 +0.5
451,728 + BACOVA_02110 0.83 +0.1
451,728 + BACOVA_02110 0.83 -0.7
451,728 + BACOVA_02110 0.83 +0.2
451,729 - BACOVA_02110 0.83 -0.1
451,729 - BACOVA_02110 0.83 -0.9
451,729 - BACOVA_02110 0.83 +0.4
451,729 - BACOVA_02110 0.83 -0.9
451,749 - BACOVA_02110 0.84 -0.5
451,814 + BACOVA_02110 0.87 +0.4
451,814 + BACOVA_02110 0.87 +0.1
451,815 - BACOVA_02110 0.87 +0.3
451,815 - BACOVA_02110 0.87 -0.4
451,815 - BACOVA_02110 0.87 +0.2
451,817 + BACOVA_02110 0.87 +1.1
451,834 - BACOVA_02110 0.88 -1.8
451,908 - -1.1
451,922 + +0.5
451,923 - -0.2
451,933 - -0.1
452,013 - +0.1
452,014 + +1.6
452,014 + +0.4
452,025 - +0.3
452,119 + +0.5
452,120 - +0.8
452,132 + +0.2
452,155 - -0.8
452,155 - -0.5
452,257 + -0.6
452,257 + -1.2
452,274 + +0.1
452,275 - -1.6
452,275 - +0.0
452,275 - +1.7
452,275 - -0.9
452,315 - -0.8
452,317 - -0.3
452,372 + BACOVA_02111 0.13 -0.4
452,372 + BACOVA_02111 0.13 +0.4
452,386 + BACOVA_02111 0.14 +0.0
452,422 + BACOVA_02111 0.16 +1.1
452,423 - BACOVA_02111 0.16 -0.4
452,423 - BACOVA_02111 0.16 -0.2
452,425 - BACOVA_02111 0.16 -0.8
452,428 + BACOVA_02111 0.17 -0.5
452,446 + BACOVA_02111 0.18 -0.1
452,518 + BACOVA_02111 0.22 -0.6
452,519 - BACOVA_02111 0.22 -0.7
452,519 - BACOVA_02111 0.22 +0.6
452,524 + BACOVA_02111 0.22 -0.4
452,549 + BACOVA_02111 0.24 +0.6
452,556 + BACOVA_02111 0.24 -0.3
452,613 + BACOVA_02111 0.28 +0.1
452,613 - BACOVA_02111 0.28 -0.1
452,614 - BACOVA_02111 0.28 -0.6
452,643 + BACOVA_02111 0.30 -0.9
452,722 - BACOVA_02111 0.34 -0.8
452,864 + BACOVA_02111 0.43 -0.2
452,864 + BACOVA_02111 0.43 +0.5
452,878 + BACOVA_02111 0.44 +1.8
452,920 - BACOVA_02111 0.46 +0.4
452,924 - BACOVA_02111 0.47 +0.1
452,941 + BACOVA_02111 0.48 -0.5
452,942 - BACOVA_02111 0.48 -0.5
452,947 + BACOVA_02111 0.48 -0.0
452,948 - BACOVA_02111 0.48 +0.0
452,969 + BACOVA_02111 0.49 -0.3
453,003 + BACOVA_02111 0.52 -0.5
453,003 + BACOVA_02111 0.52 -0.8
453,004 - BACOVA_02111 0.52 +0.0
453,004 - BACOVA_02111 0.52 -0.2
453,005 + BACOVA_02111 0.52 +0.3
453,006 - BACOVA_02111 0.52 -0.5
453,006 - BACOVA_02111 0.52 -1.4
453,006 - BACOVA_02111 0.52 +0.0
453,076 - BACOVA_02111 0.56 -0.4
453,078 + BACOVA_02111 0.56 -0.5
453,083 + BACOVA_02111 0.56 -0.3
453,083 + BACOVA_02111 0.56 -0.3
453,083 + BACOVA_02111 0.56 -1.2
453,084 - BACOVA_02111 0.56 +0.5
453,084 - BACOVA_02111 0.56 +0.3
453,094 - BACOVA_02111 0.57 -1.2
453,094 - BACOVA_02111 0.57 -0.2

Or see this region's nucleotide sequence