Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02031

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02030 and BACOVA_02031 are separated by 30 nucleotidesBACOVA_02031 and BACOVA_02032 are separated by 7 nucleotidesBACOVA_02032 and BACOVA_02033 are separated by 92 nucleotides BACOVA_02030: BACOVA_02030 - comF family protein, at 333,718 to 334,422 _02030 BACOVA_02031: BACOVA_02031 - inositol monophosphatase family protein, at 334,453 to 335,256 _02031 BACOVA_02032: BACOVA_02032 - hypothetical protein, at 335,264 to 335,404 _02032 BACOVA_02033: BACOVA_02033 - hypothetical protein, at 335,497 to 337,026 _02033 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 333.469 kb on + strandat 333.470 kb on - strandat 333.517 kb on - strandat 333.572 kb on - strandat 333.626 kb on + strandat 333.627 kb on - strandat 333.627 kb on - strandat 333.636 kb on + strandat 333.673 kb on - strandat 333.698 kb on + strandat 333.699 kb on - strandat 333.701 kb on - strandat 333.739 kb on + strandat 333.741 kb on + strandat 333.741 kb on + strandat 333.742 kb on - strandat 333.745 kb on - strandat 333.745 kb on - strandat 333.795 kb on + strand, within BACOVA_02030at 333.824 kb on - strand, within BACOVA_02030at 333.824 kb on - strand, within BACOVA_02030at 333.829 kb on + strand, within BACOVA_02030at 333.830 kb on - strand, within BACOVA_02030at 333.830 kb on - strand, within BACOVA_02030at 333.830 kb on - strand, within BACOVA_02030at 333.830 kb on - strand, within BACOVA_02030at 333.874 kb on - strand, within BACOVA_02030at 333.874 kb on - strand, within BACOVA_02030at 333.886 kb on - strand, within BACOVA_02030at 333.940 kb on + strand, within BACOVA_02030at 333.954 kb on + strand, within BACOVA_02030at 333.973 kb on + strand, within BACOVA_02030at 334.011 kb on + strand, within BACOVA_02030at 334.012 kb on - strand, within BACOVA_02030at 334.012 kb on - strand, within BACOVA_02030at 334.107 kb on + strand, within BACOVA_02030at 334.110 kb on - strand, within BACOVA_02030at 334.129 kb on + strand, within BACOVA_02030at 334.129 kb on + strand, within BACOVA_02030at 334.130 kb on - strand, within BACOVA_02030at 334.130 kb on - strand, within BACOVA_02030at 334.148 kb on + strand, within BACOVA_02030at 334.257 kb on + strand, within BACOVA_02030at 334.275 kb on - strand, within BACOVA_02030at 334.297 kb on - strand, within BACOVA_02030at 334.297 kb on - strand, within BACOVA_02030at 334.299 kb on + strand, within BACOVA_02030at 334.300 kb on - strand, within BACOVA_02030at 334.300 kb on - strand, within BACOVA_02030at 334.300 kb on - strand, within BACOVA_02030at 334.300 kb on - strand, within BACOVA_02030at 334.300 kb on - strand, within BACOVA_02030at 334.308 kb on + strand, within BACOVA_02030at 334.314 kb on + strand, within BACOVA_02030at 334.315 kb on - strand, within BACOVA_02030at 334.315 kb on - strand, within BACOVA_02030at 334.334 kb on - strand, within BACOVA_02030at 334.378 kb on + strandat 334.379 kb on - strandat 334.379 kb on - strandat 334.389 kb on + strandat 334.389 kb on + strandat 334.390 kb on - strandat 334.390 kb on - strandat 334.422 kb on + strandat 334.425 kb on + strandat 334.426 kb on - strandat 334.428 kb on + strandat 334.429 kb on - strandat 334.443 kb on - strandat 334.448 kb on - strandat 334.454 kb on + strandat 334.454 kb on + strandat 334.458 kb on + strandat 334.527 kb on + strandat 334.528 kb on - strandat 334.528 kb on - strandat 334.528 kb on - strandat 334.670 kb on + strand, within BACOVA_02031at 334.671 kb on - strand, within BACOVA_02031at 334.708 kb on - strand, within BACOVA_02031at 334.725 kb on - strand, within BACOVA_02031at 334.760 kb on + strand, within BACOVA_02031at 334.775 kb on + strand, within BACOVA_02031at 334.882 kb on + strand, within BACOVA_02031at 334.901 kb on + strand, within BACOVA_02031at 334.901 kb on + strand, within BACOVA_02031at 334.936 kb on + strand, within BACOVA_02031at 334.937 kb on - strand, within BACOVA_02031at 334.975 kb on - strand, within BACOVA_02031at 334.975 kb on - strand, within BACOVA_02031at 334.976 kb on + strand, within BACOVA_02031at 334.976 kb on + strand, within BACOVA_02031at 334.977 kb on - strand, within BACOVA_02031at 335.015 kb on + strand, within BACOVA_02031at 335.030 kb on + strand, within BACOVA_02031at 335.083 kb on - strand, within BACOVA_02031at 335.083 kb on - strand, within BACOVA_02031at 335.124 kb on - strand, within BACOVA_02031at 335.124 kb on - strand, within BACOVA_02031at 335.132 kb on + strand, within BACOVA_02031at 335.132 kb on + strand, within BACOVA_02031at 335.133 kb on - strand, within BACOVA_02031at 335.133 kb on - strand, within BACOVA_02031at 335.224 kb on + strandat 335.235 kb on + strandat 335.235 kb on + strandat 335.236 kb on - strandat 335.259 kb on - strandat 335.356 kb on + strand, within BACOVA_02032at 335.380 kb on + strand, within BACOVA_02032at 335.380 kb on + strand, within BACOVA_02032at 335.381 kb on - strand, within BACOVA_02032at 335.381 kb on - strand, within BACOVA_02032at 335.384 kb on + strand, within BACOVA_02032at 335.385 kb on + strand, within BACOVA_02032at 335.396 kb on + strandat 335.423 kb on + strandat 335.458 kb on - strandat 335.482 kb on + strandat 335.483 kb on - strandat 335.489 kb on + strandat 335.492 kb on + strandat 335.492 kb on + strandat 335.493 kb on - strandat 335.529 kb on + strandat 335.530 kb on - strandat 335.530 kb on - strandat 335.537 kb on + strandat 335.609 kb on - strandat 335.620 kb on - strandat 335.625 kb on + strandat 335.626 kb on - strandat 335.629 kb on + strandat 335.630 kb on - strandat 335.634 kb on + strandat 335.634 kb on + strandat 335.650 kb on + strand, within BACOVA_02033at 335.651 kb on - strand, within BACOVA_02033at 335.677 kb on - strand, within BACOVA_02033at 335.697 kb on - strand, within BACOVA_02033at 335.712 kb on + strand, within BACOVA_02033at 335.724 kb on + strand, within BACOVA_02033at 335.725 kb on - strand, within BACOVA_02033at 335.725 kb on - strand, within BACOVA_02033at 335.726 kb on + strand, within BACOVA_02033at 335.726 kb on + strand, within BACOVA_02033at 335.726 kb on + strand, within BACOVA_02033at 335.726 kb on + strand, within BACOVA_02033at 335.727 kb on - strand, within BACOVA_02033at 335.727 kb on - strand, within BACOVA_02033at 335.727 kb on - strand, within BACOVA_02033at 335.740 kb on + strand, within BACOVA_02033at 335.802 kb on + strand, within BACOVA_02033at 335.817 kb on + strand, within BACOVA_02033at 335.817 kb on + strand, within BACOVA_02033at 335.818 kb on - strand, within BACOVA_02033at 335.821 kb on + strand, within BACOVA_02033at 335.834 kb on - strand, within BACOVA_02033at 335.892 kb on + strand, within BACOVA_02033at 335.892 kb on + strand, within BACOVA_02033at 335.905 kb on - strand, within BACOVA_02033at 335.921 kb on - strand, within BACOVA_02033at 335.923 kb on - strand, within BACOVA_02033at 335.946 kb on + strand, within BACOVA_02033at 335.946 kb on + strand, within BACOVA_02033at 335.985 kb on - strand, within BACOVA_02033at 336.078 kb on + strand, within BACOVA_02033at 336.078 kb on + strand, within BACOVA_02033at 336.079 kb on - strand, within BACOVA_02033at 336.079 kb on - strand, within BACOVA_02033at 336.098 kb on - strand, within BACOVA_02033at 336.143 kb on - strand, within BACOVA_02033at 336.145 kb on + strand, within BACOVA_02033at 336.145 kb on + strand, within BACOVA_02033at 336.146 kb on - strand, within BACOVA_02033at 336.146 kb on - strand, within BACOVA_02033at 336.166 kb on + strand, within BACOVA_02033at 336.167 kb on - strand, within BACOVA_02033at 336.181 kb on + strand, within BACOVA_02033at 336.192 kb on + strand, within BACOVA_02033at 336.192 kb on + strand, within BACOVA_02033at 336.192 kb on + strand, within BACOVA_02033

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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333,469 + +2.1
333,470 - +0.0
333,517 - +0.2
333,572 - +0.6
333,626 + +0.7
333,627 - -0.1
333,627 - -1.2
333,636 + +0.1
333,673 - -1.1
333,698 + -0.4
333,699 - -1.1
333,701 - +0.5
333,739 + +1.0
333,741 + +0.6
333,741 + +0.0
333,742 - -0.4
333,745 - +0.2
333,745 - -0.1
333,795 + BACOVA_02030 0.11 +0.1
333,824 - BACOVA_02030 0.15 -0.1
333,824 - BACOVA_02030 0.15 -0.9
333,829 + BACOVA_02030 0.16 +0.4
333,830 - BACOVA_02030 0.16 +1.5
333,830 - BACOVA_02030 0.16 +0.4
333,830 - BACOVA_02030 0.16 +0.5
333,830 - BACOVA_02030 0.16 +0.3
333,874 - BACOVA_02030 0.22 +0.4
333,874 - BACOVA_02030 0.22 +0.5
333,886 - BACOVA_02030 0.24 -0.0
333,940 + BACOVA_02030 0.31 -0.3
333,954 + BACOVA_02030 0.33 +1.1
333,973 + BACOVA_02030 0.36 -1.1
334,011 + BACOVA_02030 0.42 -0.5
334,012 - BACOVA_02030 0.42 -0.2
334,012 - BACOVA_02030 0.42 +0.2
334,107 + BACOVA_02030 0.55 +0.5
334,110 - BACOVA_02030 0.56 -0.3
334,129 + BACOVA_02030 0.58 +1.4
334,129 + BACOVA_02030 0.58 +0.2
334,130 - BACOVA_02030 0.58 +0.7
334,130 - BACOVA_02030 0.58 +0.4
334,148 + BACOVA_02030 0.61 +0.2
334,257 + BACOVA_02030 0.76 -0.4
334,275 - BACOVA_02030 0.79 +0.1
334,297 - BACOVA_02030 0.82 +0.4
334,297 - BACOVA_02030 0.82 +0.3
334,299 + BACOVA_02030 0.82 -0.1
334,300 - BACOVA_02030 0.83 -0.3
334,300 - BACOVA_02030 0.83 +0.2
334,300 - BACOVA_02030 0.83 +0.5
334,300 - BACOVA_02030 0.83 +0.4
334,300 - BACOVA_02030 0.83 +0.5
334,308 + BACOVA_02030 0.84 -1.0
334,314 + BACOVA_02030 0.85 +0.2
334,315 - BACOVA_02030 0.85 +0.8
334,315 - BACOVA_02030 0.85 -0.3
334,334 - BACOVA_02030 0.87 +0.2
334,378 + -0.3
334,379 - -0.7
334,379 - -0.6
334,389 + +0.3
334,389 + +0.3
334,390 - +0.4
334,390 - +0.3
334,422 + +0.6
334,425 + +0.3
334,426 - -0.4
334,428 + -0.6
334,429 - +0.1
334,443 - -0.1
334,448 - +1.9
334,454 + -0.1
334,454 + +0.5
334,458 + -0.6
334,527 + -0.0
334,528 - +0.6
334,528 - +0.3
334,528 - -0.2
334,670 + BACOVA_02031 0.27 -0.1
334,671 - BACOVA_02031 0.27 +0.1
334,708 - BACOVA_02031 0.32 +0.9
334,725 - BACOVA_02031 0.34 +0.3
334,760 + BACOVA_02031 0.38 -0.1
334,775 + BACOVA_02031 0.40 +1.9
334,882 + BACOVA_02031 0.53 -1.4
334,901 + BACOVA_02031 0.56 -0.3
334,901 + BACOVA_02031 0.56 -0.0
334,936 + BACOVA_02031 0.60 -0.4
334,937 - BACOVA_02031 0.60 +0.4
334,975 - BACOVA_02031 0.65 +0.0
334,975 - BACOVA_02031 0.65 +0.3
334,976 + BACOVA_02031 0.65 -0.4
334,976 + BACOVA_02031 0.65 +1.2
334,977 - BACOVA_02031 0.65 -0.6
335,015 + BACOVA_02031 0.70 +0.6
335,030 + BACOVA_02031 0.72 +0.2
335,083 - BACOVA_02031 0.78 -0.1
335,083 - BACOVA_02031 0.78 -0.0
335,124 - BACOVA_02031 0.83 +0.4
335,124 - BACOVA_02031 0.83 +0.8
335,132 + BACOVA_02031 0.84 +0.5
335,132 + BACOVA_02031 0.84 -0.8
335,133 - BACOVA_02031 0.85 +0.3
335,133 - BACOVA_02031 0.85 -0.0
335,224 + +0.5
335,235 + +0.0
335,235 + +0.1
335,236 - -0.0
335,259 - -1.6
335,356 + BACOVA_02032 0.65 -0.3
335,380 + BACOVA_02032 0.82 +0.1
335,380 + BACOVA_02032 0.82 +0.3
335,381 - BACOVA_02032 0.83 -0.3
335,381 - BACOVA_02032 0.83 -0.9
335,384 + BACOVA_02032 0.85 +0.3
335,385 + BACOVA_02032 0.86 +1.2
335,396 + +0.6
335,423 + +0.2
335,458 - +0.0
335,482 + -0.5
335,483 - -0.0
335,489 + +0.7
335,492 + +0.2
335,492 + -0.6
335,493 - +0.5
335,529 + +1.5
335,530 - -1.8
335,530 - +0.3
335,537 + +1.2
335,609 - +0.6
335,620 - -0.7
335,625 + -0.1
335,626 - +0.3
335,629 + -0.9
335,630 - +0.1
335,634 + -0.6
335,634 + -0.1
335,650 + BACOVA_02033 0.10 -0.3
335,651 - BACOVA_02033 0.10 -1.1
335,677 - BACOVA_02033 0.12 -0.1
335,697 - BACOVA_02033 0.13 +0.0
335,712 + BACOVA_02033 0.14 +0.8
335,724 + BACOVA_02033 0.15 +0.8
335,725 - BACOVA_02033 0.15 +0.8
335,725 - BACOVA_02033 0.15 -0.1
335,726 + BACOVA_02033 0.15 -0.1
335,726 + BACOVA_02033 0.15 +0.2
335,726 + BACOVA_02033 0.15 -0.7
335,726 + BACOVA_02033 0.15 -0.3
335,727 - BACOVA_02033 0.15 -0.3
335,727 - BACOVA_02033 0.15 +0.1
335,727 - BACOVA_02033 0.15 -0.5
335,740 + BACOVA_02033 0.16 -0.3
335,802 + BACOVA_02033 0.20 +0.5
335,817 + BACOVA_02033 0.21 +0.2
335,817 + BACOVA_02033 0.21 +0.0
335,818 - BACOVA_02033 0.21 +0.9
335,821 + BACOVA_02033 0.21 -0.4
335,834 - BACOVA_02033 0.22 -0.3
335,892 + BACOVA_02033 0.26 +0.9
335,892 + BACOVA_02033 0.26 -0.3
335,905 - BACOVA_02033 0.27 +0.5
335,921 - BACOVA_02033 0.28 -0.9
335,923 - BACOVA_02033 0.28 -0.6
335,946 + BACOVA_02033 0.29 -0.4
335,946 + BACOVA_02033 0.29 -1.6
335,985 - BACOVA_02033 0.32 -0.0
336,078 + BACOVA_02033 0.38 +0.2
336,078 + BACOVA_02033 0.38 +0.6
336,079 - BACOVA_02033 0.38 -0.3
336,079 - BACOVA_02033 0.38 +0.0
336,098 - BACOVA_02033 0.39 -1.1
336,143 - BACOVA_02033 0.42 +0.3
336,145 + BACOVA_02033 0.42 -0.2
336,145 + BACOVA_02033 0.42 -0.3
336,146 - BACOVA_02033 0.42 -0.5
336,146 - BACOVA_02033 0.42 -0.2
336,166 + BACOVA_02033 0.44 +1.1
336,167 - BACOVA_02033 0.44 +0.4
336,181 + BACOVA_02033 0.45 +0.3
336,192 + BACOVA_02033 0.45 -0.5
336,192 + BACOVA_02033 0.45 +0.8
336,192 + BACOVA_02033 0.45 +0.4

Or see this region's nucleotide sequence