Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00911

Experiment: Polygalacturonic 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00909 and BACOVA_00910 overlap by 13 nucleotidesBACOVA_00910 and BACOVA_00911 are separated by 6 nucleotidesBACOVA_00911 and BACOVA_00912 are separated by 105 nucleotides BACOVA_00909: BACOVA_00909 - kinase, PfkB family, at 43,210 to 44,130 _00909 BACOVA_00910: BACOVA_00910 - sugar isomerase, KpsF/GutQ family, at 44,118 to 44,723 _00910 BACOVA_00911: BACOVA_00911 - TIGR00730 family protein, at 44,730 to 45,263 _00911 BACOVA_00912: BACOVA_00912 - peptidase M16 inactive domain protein, at 45,369 to 46,589 _00912 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 43.757 kb on + strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.836 kb on - strand, within BACOVA_00909at 43.844 kb on + strand, within BACOVA_00909at 43.883 kb on - strand, within BACOVA_00909at 43.907 kb on - strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.913 kb on - strand, within BACOVA_00909at 43.929 kb on + strand, within BACOVA_00909at 43.960 kb on - strand, within BACOVA_00909at 44.006 kb on - strand, within BACOVA_00909at 44.032 kb on - strand, within BACOVA_00909at 44.041 kb on + strandat 44.737 kb on - strandat 44.758 kb on - strandat 44.758 kb on - strandat 44.780 kb on - strandat 44.839 kb on - strand, within BACOVA_00911at 44.839 kb on - strand, within BACOVA_00911at 44.858 kb on - strand, within BACOVA_00911at 44.867 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.937 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.043 kb on - strand, within BACOVA_00911at 45.152 kb on - strand, within BACOVA_00911at 45.190 kb on - strand, within BACOVA_00911at 45.212 kb on - strandat 45.253 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.280 kb on - strandat 45.326 kb on - strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.352 kb on + strandat 45.353 kb on - strandat 45.377 kb on + strandat 45.386 kb on + strandat 45.386 kb on + strandat 45.387 kb on - strandat 45.407 kb on + strandat 45.441 kb on + strandat 45.441 kb on + strandat 45.442 kb on - strandat 45.442 kb on - strandat 45.527 kb on + strand, within BACOVA_00912at 45.557 kb on + strand, within BACOVA_00912at 45.580 kb on + strand, within BACOVA_00912at 45.580 kb on + strand, within BACOVA_00912at 45.600 kb on + strand, within BACOVA_00912at 45.601 kb on - strand, within BACOVA_00912at 45.608 kb on + strand, within BACOVA_00912at 45.645 kb on + strand, within BACOVA_00912at 45.681 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.715 kb on + strand, within BACOVA_00912at 45.716 kb on - strand, within BACOVA_00912at 45.756 kb on + strand, within BACOVA_00912at 45.757 kb on - strand, within BACOVA_00912at 45.757 kb on - strand, within BACOVA_00912at 45.782 kb on - strand, within BACOVA_00912at 45.883 kb on + strand, within BACOVA_00912at 45.884 kb on - strand, within BACOVA_00912at 45.903 kb on + strand, within BACOVA_00912at 45.904 kb on - strand, within BACOVA_00912at 45.917 kb on + strand, within BACOVA_00912at 45.979 kb on - strand, within BACOVA_00912at 45.989 kb on + strand, within BACOVA_00912at 46.006 kb on + strand, within BACOVA_00912at 46.035 kb on + strand, within BACOVA_00912at 46.106 kb on + strand, within BACOVA_00912at 46.127 kb on + strand, within BACOVA_00912at 46.137 kb on + strand, within BACOVA_00912at 46.137 kb on + strand, within BACOVA_00912at 46.138 kb on - strand, within BACOVA_00912at 46.178 kb on + strand, within BACOVA_00912at 46.178 kb on + strand, within BACOVA_00912at 46.218 kb on + strand, within BACOVA_00912at 46.221 kb on - strand, within BACOVA_00912at 46.246 kb on - strand, within BACOVA_00912

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
remove
43,757 + BACOVA_00909 0.59 +0.9
43,758 - BACOVA_00909 0.60 -0.4
43,758 - BACOVA_00909 0.60 -2.6
43,836 - BACOVA_00909 0.68 -0.4
43,844 + BACOVA_00909 0.69 -0.3
43,883 - BACOVA_00909 0.73 +0.5
43,907 - BACOVA_00909 0.76 -0.4
43,912 + BACOVA_00909 0.76 -0.3
43,912 + BACOVA_00909 0.76 -0.4
43,912 + BACOVA_00909 0.76 -0.9
43,913 - BACOVA_00909 0.76 -0.1
43,929 + BACOVA_00909 0.78 +0.0
43,960 - BACOVA_00909 0.81 +1.5
44,006 - BACOVA_00909 0.86 +0.8
44,032 - BACOVA_00909 0.89 +1.0
44,041 + -0.8
44,737 - +0.7
44,758 - -0.6
44,758 - +1.7
44,780 - +0.6
44,839 - BACOVA_00911 0.20 +0.1
44,839 - BACOVA_00911 0.20 +0.4
44,858 - BACOVA_00911 0.24 -0.4
44,867 - BACOVA_00911 0.26 +0.5
44,914 - BACOVA_00911 0.34 -0.6
44,914 - BACOVA_00911 0.34 -0.2
44,937 - BACOVA_00911 0.39 +0.8
45,031 - BACOVA_00911 0.56 -0.9
45,031 - BACOVA_00911 0.56 +0.9
45,043 - BACOVA_00911 0.59 +0.9
45,152 - BACOVA_00911 0.79 +0.1
45,190 - BACOVA_00911 0.86 +0.2
45,212 - +0.6
45,253 - -1.0
45,266 - +0.5
45,266 - -0.4
45,280 - +0.1
45,326 - +0.5
45,344 + -0.2
45,344 + -1.6
45,352 + +0.4
45,353 - -0.7
45,377 + +0.1
45,386 + +0.7
45,386 + -0.9
45,387 - -0.4
45,407 + -2.2
45,441 + -1.4
45,441 + +0.2
45,442 - -0.5
45,442 - +1.9
45,527 + BACOVA_00912 0.13 -0.6
45,557 + BACOVA_00912 0.15 +1.3
45,580 + BACOVA_00912 0.17 +0.3
45,580 + BACOVA_00912 0.17 -0.8
45,600 + BACOVA_00912 0.19 -0.7
45,601 - BACOVA_00912 0.19 -1.5
45,608 + BACOVA_00912 0.20 -1.3
45,645 + BACOVA_00912 0.23 -0.4
45,681 - BACOVA_00912 0.26 -0.7
45,686 - BACOVA_00912 0.26 +1.5
45,686 - BACOVA_00912 0.26 -0.3
45,686 - BACOVA_00912 0.26 +0.7
45,715 + BACOVA_00912 0.28 -0.1
45,716 - BACOVA_00912 0.28 -0.4
45,756 + BACOVA_00912 0.32 -0.0
45,757 - BACOVA_00912 0.32 +0.7
45,757 - BACOVA_00912 0.32 -0.9
45,782 - BACOVA_00912 0.34 +0.0
45,883 + BACOVA_00912 0.42 -0.7
45,884 - BACOVA_00912 0.42 +0.3
45,903 + BACOVA_00912 0.44 -0.4
45,904 - BACOVA_00912 0.44 -0.8
45,917 + BACOVA_00912 0.45 -0.8
45,979 - BACOVA_00912 0.50 +0.7
45,989 + BACOVA_00912 0.51 -2.0
46,006 + BACOVA_00912 0.52 +0.1
46,035 + BACOVA_00912 0.55 -1.5
46,106 + BACOVA_00912 0.60 +0.2
46,127 + BACOVA_00912 0.62 -0.3
46,137 + BACOVA_00912 0.63 +1.0
46,137 + BACOVA_00912 0.63 -0.7
46,138 - BACOVA_00912 0.63 -0.8
46,178 + BACOVA_00912 0.66 -1.1
46,178 + BACOVA_00912 0.66 -0.4
46,218 + BACOVA_00912 0.70 -0.2
46,221 - BACOVA_00912 0.70 -1.1
46,246 - BACOVA_00912 0.72 +0.1

Or see this region's nucleotide sequence