Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00907 and BACOVA_00908 are separated by 214 nucleotides BACOVA_00908 and BACOVA_00909 are separated by 152 nucleotides
BACOVA_00907: BACOVA_00907 - glycosyl hydrolase family 76, at 40,063 to 41,226
_00907
BACOVA_00908: BACOVA_00908 - hypothetical protein, at 41,441 to 43,057
_00908
BACOVA_00909: BACOVA_00909 - kinase, PfkB family, at 43,210 to 44,130
_00909
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.467 kb on + strand, within BACOVA_00907 at 40.469 kb on + strand, within BACOVA_00907 at 40.522 kb on + strand, within BACOVA_00907 at 40.565 kb on + strand, within BACOVA_00907 at 40.568 kb on - strand, within BACOVA_00907 at 40.585 kb on + strand, within BACOVA_00907 at 40.585 kb on + strand, within BACOVA_00907 at 40.615 kb on + strand, within BACOVA_00907 at 40.647 kb on + strand, within BACOVA_00907 at 40.647 kb on + strand, within BACOVA_00907 at 40.656 kb on + strand, within BACOVA_00907 at 40.722 kb on + strand, within BACOVA_00907 at 40.723 kb on - strand, within BACOVA_00907 at 40.760 kb on + strand, within BACOVA_00907 at 40.760 kb on + strand, within BACOVA_00907 at 40.795 kb on - strand, within BACOVA_00907 at 40.804 kb on + strand, within BACOVA_00907 at 40.807 kb on + strand, within BACOVA_00907 at 40.819 kb on - strand, within BACOVA_00907 at 40.860 kb on - strand, within BACOVA_00907 at 40.918 kb on + strand, within BACOVA_00907 at 40.942 kb on - strand, within BACOVA_00907 at 40.987 kb on + strand, within BACOVA_00907 at 41.013 kb on - strand, within BACOVA_00907 at 41.019 kb on - strand, within BACOVA_00907 at 41.020 kb on + strand, within BACOVA_00907 at 41.053 kb on + strand, within BACOVA_00907 at 41.053 kb on + strand, within BACOVA_00907 at 41.053 kb on + strand, within BACOVA_00907 at 41.057 kb on + strand, within BACOVA_00907 at 41.067 kb on + strand, within BACOVA_00907 at 41.101 kb on + strand, within BACOVA_00907 at 41.123 kb on + strand at 41.124 kb on - strand at 41.170 kb on - strand at 41.209 kb on - strand at 41.212 kb on + strand at 41.213 kb on - strand at 41.249 kb on + strand at 41.257 kb on + strand at 41.260 kb on + strand at 41.284 kb on + strand at 41.308 kb on + strand at 41.309 kb on - strand at 41.347 kb on - strand at 41.431 kb on + strand at 41.442 kb on + strand at 41.533 kb on + strand at 41.533 kb on + strand at 41.535 kb on + strand at 41.536 kb on - strand at 41.553 kb on + strand at 41.554 kb on - strand at 41.554 kb on - strand at 41.554 kb on - strand at 41.554 kb on - strand at 41.554 kb on - strand at 41.559 kb on - strand at 41.618 kb on + strand, within BACOVA_00908 at 41.630 kb on + strand, within BACOVA_00908 at 41.734 kb on - strand, within BACOVA_00908 at 41.802 kb on - strand, within BACOVA_00908 at 41.840 kb on - strand, within BACOVA_00908 at 41.861 kb on - strand, within BACOVA_00908 at 41.862 kb on + strand, within BACOVA_00908 at 41.862 kb on + strand, within BACOVA_00908 at 41.871 kb on + strand, within BACOVA_00908 at 41.871 kb on + strand, within BACOVA_00908 at 41.871 kb on + strand, within BACOVA_00908 at 41.872 kb on - strand, within BACOVA_00908 at 41.872 kb on - strand, within BACOVA_00908 at 41.882 kb on - strand, within BACOVA_00908 at 41.884 kb on - strand, within BACOVA_00908 at 41.896 kb on - strand, within BACOVA_00908 at 41.911 kb on + strand, within BACOVA_00908 at 41.917 kb on + strand, within BACOVA_00908 at 41.917 kb on + strand, within BACOVA_00908 at 41.917 kb on + strand, within BACOVA_00908 at 41.977 kb on + strand, within BACOVA_00908 at 42.029 kb on + strand, within BACOVA_00908 at 42.050 kb on + strand, within BACOVA_00908 at 42.113 kb on - strand, within BACOVA_00908 at 42.116 kb on + strand, within BACOVA_00908 at 42.117 kb on - strand, within BACOVA_00908 at 42.126 kb on + strand, within BACOVA_00908 at 42.127 kb on - strand, within BACOVA_00908 at 42.127 kb on - strand, within BACOVA_00908 at 42.130 kb on + strand, within BACOVA_00908 at 42.130 kb on + strand, within BACOVA_00908 at 42.131 kb on - strand, within BACOVA_00908 at 42.164 kb on - strand, within BACOVA_00908 at 42.167 kb on + strand, within BACOVA_00908 at 42.167 kb on + strand, within BACOVA_00908 at 42.168 kb on - strand, within BACOVA_00908 at 42.199 kb on - strand, within BACOVA_00908 at 42.202 kb on + strand, within BACOVA_00908 at 42.203 kb on - strand, within BACOVA_00908 at 42.236 kb on + strand, within BACOVA_00908 at 42.237 kb on - strand, within BACOVA_00908 at 42.245 kb on + strand, within BACOVA_00908 at 42.248 kb on + strand, within BACOVA_00908 at 42.248 kb on + strand, within BACOVA_00908 at 42.271 kb on + strand, within BACOVA_00908 at 42.281 kb on + strand, within BACOVA_00908 at 42.282 kb on - strand, within BACOVA_00908 at 42.284 kb on + strand, within BACOVA_00908 at 42.284 kb on + strand, within BACOVA_00908 at 42.285 kb on - strand, within BACOVA_00908 at 42.302 kb on + strand, within BACOVA_00908 at 42.316 kb on + strand, within BACOVA_00908 at 42.317 kb on - strand, within BACOVA_00908 at 42.322 kb on + strand, within BACOVA_00908 at 42.366 kb on + strand, within BACOVA_00908 at 42.366 kb on + strand, within BACOVA_00908 at 42.366 kb on + strand, within BACOVA_00908 at 42.367 kb on - strand, within BACOVA_00908 at 42.367 kb on - strand, within BACOVA_00908 at 42.370 kb on + strand, within BACOVA_00908 at 42.372 kb on - strand, within BACOVA_00908 at 42.393 kb on + strand, within BACOVA_00908 at 42.400 kb on + strand, within BACOVA_00908 at 42.400 kb on + strand, within BACOVA_00908 at 42.401 kb on - strand, within BACOVA_00908 at 42.403 kb on - strand, within BACOVA_00908 at 42.428 kb on - strand, within BACOVA_00908 at 42.428 kb on - strand, within BACOVA_00908 at 42.428 kb on - strand, within BACOVA_00908 at 42.428 kb on - strand, within BACOVA_00908 at 42.433 kb on + strand, within BACOVA_00908 at 42.451 kb on + strand, within BACOVA_00908 at 42.477 kb on - strand, within BACOVA_00908 at 42.488 kb on + strand, within BACOVA_00908 at 42.534 kb on - strand, within BACOVA_00908 at 42.543 kb on - strand, within BACOVA_00908 at 42.543 kb on - strand, within BACOVA_00908 at 42.600 kb on + strand, within BACOVA_00908 at 42.647 kb on + strand, within BACOVA_00908 at 42.647 kb on + strand, within BACOVA_00908 at 42.648 kb on - strand, within BACOVA_00908 at 42.673 kb on + strand, within BACOVA_00908 at 42.760 kb on + strand, within BACOVA_00908 at 42.761 kb on - strand, within BACOVA_00908 at 42.795 kb on + strand, within BACOVA_00908 at 42.800 kb on + strand, within BACOVA_00908 at 42.890 kb on + strand, within BACOVA_00908 at 42.891 kb on - strand, within BACOVA_00908 at 42.908 kb on + strand at 42.909 kb on - strand at 42.932 kb on - strand at 42.933 kb on + strand at 42.933 kb on + strand at 42.971 kb on + strand at 43.007 kb on + strand at 43.021 kb on + strand at 43.028 kb on + strand at 43.029 kb on - strand at 43.034 kb on + strand at 43.034 kb on + strand at 43.035 kb on - strand at 43.041 kb on - strand at 43.059 kb on + strand at 43.062 kb on + strand at 43.063 kb on - strand at 43.066 kb on + strand at 43.066 kb on + strand at 43.067 kb on - strand at 43.102 kb on - strand at 43.121 kb on + strand at 43.135 kb on + strand at 43.181 kb on + strand at 43.182 kb on - strand at 43.182 kb on - strand at 43.185 kb on + strand at 43.185 kb on + strand at 43.186 kb on - strand at 43.186 kb on - strand at 43.187 kb on + strand at 43.199 kb on + strand at 43.298 kb on - strand at 43.330 kb on + strand, within BACOVA_00909 at 43.352 kb on + strand, within BACOVA_00909 at 43.352 kb on + strand, within BACOVA_00909 at 43.353 kb on - strand, within BACOVA_00909 at 43.404 kb on + strand, within BACOVA_00909 at 43.404 kb on + strand, within BACOVA_00909 at 43.407 kb on + strand, within BACOVA_00909 at 43.408 kb on - strand, within BACOVA_00909 at 43.444 kb on - strand, within BACOVA_00909 at 43.455 kb on + strand, within BACOVA_00909 at 43.468 kb on + strand, within BACOVA_00909 at 43.521 kb on + strand, within BACOVA_00909 at 43.530 kb on - strand, within BACOVA_00909 at 43.540 kb on + strand, within BACOVA_00909 at 43.541 kb on - strand, within BACOVA_00909 at 43.541 kb on - strand, within BACOVA_00909 at 43.541 kb on - strand, within BACOVA_00909 at 43.555 kb on - strand, within BACOVA_00909 at 43.556 kb on + strand, within BACOVA_00909 at 43.556 kb on + strand, within BACOVA_00909 at 43.557 kb on - strand, within BACOVA_00909 at 43.557 kb on - strand, within BACOVA_00909 at 43.560 kb on + strand, within BACOVA_00909 at 43.560 kb on + strand, within BACOVA_00909 at 43.560 kb on + strand, within BACOVA_00909 at 43.561 kb on - strand, within BACOVA_00909 at 43.561 kb on - strand, within BACOVA_00909 at 43.561 kb on - strand, within BACOVA_00909 at 43.562 kb on + strand, within BACOVA_00909 at 43.562 kb on + strand, within BACOVA_00909 at 43.562 kb on + strand, within BACOVA_00909 at 43.679 kb on + strand, within BACOVA_00909 at 43.680 kb on - strand, within BACOVA_00909 at 43.680 kb on - strand, within BACOVA_00909 at 43.680 kb on - strand, within BACOVA_00909 at 43.711 kb on + strand, within BACOVA_00909 at 43.712 kb on - strand, within BACOVA_00909 at 43.757 kb on + strand, within BACOVA_00909 at 43.758 kb on - strand, within BACOVA_00909 at 43.758 kb on - strand, within BACOVA_00909 at 43.836 kb on - strand, within BACOVA_00909 at 43.844 kb on + strand, within BACOVA_00909 at 43.883 kb on - strand, within BACOVA_00909 at 43.907 kb on - strand, within BACOVA_00909 at 43.912 kb on + strand, within BACOVA_00909 at 43.912 kb on + strand, within BACOVA_00909 at 43.912 kb on + strand, within BACOVA_00909 at 43.913 kb on - strand, within BACOVA_00909 at 43.929 kb on + strand, within BACOVA_00909 at 43.960 kb on - strand, within BACOVA_00909 at 44.006 kb on - strand, within BACOVA_00909 at 44.032 kb on - strand, within BACOVA_00909 at 44.041 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 40,467 + BACOVA_00907 0.35 +1.1 40,469 + BACOVA_00907 0.35 -1.7 40,522 + BACOVA_00907 0.39 -1.2 40,565 + BACOVA_00907 0.43 -0.3 40,568 - BACOVA_00907 0.43 +0.4 40,585 + BACOVA_00907 0.45 -0.7 40,585 + BACOVA_00907 0.45 -1.6 40,615 + BACOVA_00907 0.47 -0.4 40,647 + BACOVA_00907 0.50 -1.1 40,647 + BACOVA_00907 0.50 -0.6 40,656 + BACOVA_00907 0.51 +0.2 40,722 + BACOVA_00907 0.57 +0.0 40,723 - BACOVA_00907 0.57 +0.9 40,760 + BACOVA_00907 0.60 -0.1 40,760 + BACOVA_00907 0.60 +0.5 40,795 - BACOVA_00907 0.63 -0.7 40,804 + BACOVA_00907 0.64 -0.5 40,807 + BACOVA_00907 0.64 -0.4 40,819 - BACOVA_00907 0.65 -0.0 40,860 - BACOVA_00907 0.68 -0.2 40,918 + BACOVA_00907 0.73 -0.4 40,942 - BACOVA_00907 0.76 +0.2 40,987 + BACOVA_00907 0.79 -0.2 41,013 - BACOVA_00907 0.82 +1.3 41,019 - BACOVA_00907 0.82 +0.8 41,020 + BACOVA_00907 0.82 -0.0 41,053 + BACOVA_00907 0.85 -0.1 41,053 + BACOVA_00907 0.85 -0.7 41,053 + BACOVA_00907 0.85 +0.7 41,057 + BACOVA_00907 0.85 -1.5 41,067 + BACOVA_00907 0.86 +1.9 41,101 + BACOVA_00907 0.89 -1.0 41,123 + +0.0 41,124 - -0.3 41,170 - +0.9 41,209 - +0.0 41,212 + +0.9 41,213 - +0.2 41,249 + -0.8 41,257 + -0.0 41,260 + +0.3 41,284 + +1.1 41,308 + -0.1 41,309 - +1.5 41,347 - +0.2 41,431 + +1.3 41,442 + -1.5 41,533 + +0.4 41,533 + +0.4 41,535 + -1.1 41,536 - +1.0 41,553 + -0.6 41,554 - +0.1 41,554 - +0.1 41,554 - +0.8 41,554 - -0.3 41,554 - -0.7 41,559 - +0.3 41,618 + BACOVA_00908 0.11 -0.7 41,630 + BACOVA_00908 0.12 -1.8 41,734 - BACOVA_00908 0.18 +1.0 41,802 - BACOVA_00908 0.22 +0.6 41,840 - BACOVA_00908 0.25 -0.3 41,861 - BACOVA_00908 0.26 +0.5 41,862 + BACOVA_00908 0.26 -0.9 41,862 + BACOVA_00908 0.26 -0.4 41,871 + BACOVA_00908 0.27 -0.3 41,871 + BACOVA_00908 0.27 -0.6 41,871 + BACOVA_00908 0.27 -0.7 41,872 - BACOVA_00908 0.27 +0.1 41,872 - BACOVA_00908 0.27 +0.6 41,882 - BACOVA_00908 0.27 -0.9 41,884 - BACOVA_00908 0.27 -0.3 41,896 - BACOVA_00908 0.28 +0.2 41,911 + BACOVA_00908 0.29 -0.0 41,917 + BACOVA_00908 0.29 +1.5 41,917 + BACOVA_00908 0.29 -1.4 41,917 + BACOVA_00908 0.29 -0.6 41,977 + BACOVA_00908 0.33 +1.0 42,029 + BACOVA_00908 0.36 +0.2 42,050 + BACOVA_00908 0.38 +0.2 42,113 - BACOVA_00908 0.42 -0.1 42,116 + BACOVA_00908 0.42 +0.1 42,117 - BACOVA_00908 0.42 -0.4 42,126 + BACOVA_00908 0.42 -0.0 42,127 - BACOVA_00908 0.42 +1.3 42,127 - BACOVA_00908 0.42 +1.2 42,130 + BACOVA_00908 0.43 -0.7 42,130 + BACOVA_00908 0.43 +0.9 42,131 - BACOVA_00908 0.43 +1.0 42,164 - BACOVA_00908 0.45 +0.0 42,167 + BACOVA_00908 0.45 -0.5 42,167 + BACOVA_00908 0.45 +1.7 42,168 - BACOVA_00908 0.45 -0.5 42,199 - BACOVA_00908 0.47 -0.1 42,202 + BACOVA_00908 0.47 +0.0 42,203 - BACOVA_00908 0.47 +0.5 42,236 + BACOVA_00908 0.49 +0.0 42,237 - BACOVA_00908 0.49 +0.1 42,245 + BACOVA_00908 0.50 +0.2 42,248 + BACOVA_00908 0.50 -0.4 42,248 + BACOVA_00908 0.50 -0.7 42,271 + BACOVA_00908 0.51 +0.7 42,281 + BACOVA_00908 0.52 -0.4 42,282 - BACOVA_00908 0.52 -0.2 42,284 + BACOVA_00908 0.52 +0.2 42,284 + BACOVA_00908 0.52 -1.3 42,285 - BACOVA_00908 0.52 +0.1 42,302 + BACOVA_00908 0.53 +0.2 42,316 + BACOVA_00908 0.54 +0.3 42,317 - BACOVA_00908 0.54 -0.5 42,322 + BACOVA_00908 0.54 -0.3 42,366 + BACOVA_00908 0.57 -1.6 42,366 + BACOVA_00908 0.57 -0.7 42,366 + BACOVA_00908 0.57 +1.3 42,367 - BACOVA_00908 0.57 -1.1 42,367 - BACOVA_00908 0.57 +0.4 42,370 + BACOVA_00908 0.57 -0.6 42,372 - BACOVA_00908 0.58 -0.1 42,393 + BACOVA_00908 0.59 -0.4 42,400 + BACOVA_00908 0.59 +0.0 42,400 + BACOVA_00908 0.59 -0.2 42,401 - BACOVA_00908 0.59 -0.1 42,403 - BACOVA_00908 0.59 +0.1 42,428 - BACOVA_00908 0.61 -0.2 42,428 - BACOVA_00908 0.61 +0.2 42,428 - BACOVA_00908 0.61 +0.2 42,428 - BACOVA_00908 0.61 -0.2 42,433 + BACOVA_00908 0.61 +2.1 42,451 + BACOVA_00908 0.62 +0.9 42,477 - BACOVA_00908 0.64 +0.2 42,488 + BACOVA_00908 0.65 -0.5 42,534 - BACOVA_00908 0.68 +0.5 42,543 - BACOVA_00908 0.68 -0.3 42,543 - BACOVA_00908 0.68 -1.1 42,600 + BACOVA_00908 0.72 -0.5 42,647 + BACOVA_00908 0.75 +0.9 42,647 + BACOVA_00908 0.75 +0.1 42,648 - BACOVA_00908 0.75 +1.7 42,673 + BACOVA_00908 0.76 +0.2 42,760 + BACOVA_00908 0.82 -0.7 42,761 - BACOVA_00908 0.82 +0.2 42,795 + BACOVA_00908 0.84 -0.1 42,800 + BACOVA_00908 0.84 -1.2 42,890 + BACOVA_00908 0.90 +1.1 42,891 - BACOVA_00908 0.90 -0.8 42,908 + +0.3 42,909 - -0.9 42,932 - -0.9 42,933 + -0.0 42,933 + +0.8 42,971 + +0.5 43,007 + +0.5 43,021 + -0.1 43,028 + +0.3 43,029 - -1.0 43,034 + +0.7 43,034 + -0.1 43,035 - -0.3 43,041 - -0.4 43,059 + -1.3 43,062 + -0.7 43,063 - -0.6 43,066 + -0.9 43,066 + -0.4 43,067 - +0.7 43,102 - +2.3 43,121 + -0.3 43,135 + -0.2 43,181 + -0.6 43,182 - -0.0 43,182 - +1.4 43,185 + +0.6 43,185 + -1.2 43,186 - +0.5 43,186 - +0.6 43,187 + -1.2 43,199 + +0.7 43,298 - -0.8 43,330 + BACOVA_00909 0.13 +0.1 43,352 + BACOVA_00909 0.15 -0.8 43,352 + BACOVA_00909 0.15 +1.4 43,353 - BACOVA_00909 0.16 -0.4 43,404 + BACOVA_00909 0.21 -0.7 43,404 + BACOVA_00909 0.21 -0.9 43,407 + BACOVA_00909 0.21 +0.2 43,408 - BACOVA_00909 0.21 +0.9 43,444 - BACOVA_00909 0.25 -0.2 43,455 + BACOVA_00909 0.27 +0.4 43,468 + BACOVA_00909 0.28 -0.1 43,521 + BACOVA_00909 0.34 +0.9 43,530 - BACOVA_00909 0.35 -1.0 43,540 + BACOVA_00909 0.36 +0.1 43,541 - BACOVA_00909 0.36 +0.2 43,541 - BACOVA_00909 0.36 -1.0 43,541 - BACOVA_00909 0.36 +0.4 43,555 - BACOVA_00909 0.37 +0.2 43,556 + BACOVA_00909 0.38 +0.2 43,556 + BACOVA_00909 0.38 -0.2 43,557 - BACOVA_00909 0.38 +1.7 43,557 - BACOVA_00909 0.38 -1.8 43,560 + BACOVA_00909 0.38 +0.8 43,560 + BACOVA_00909 0.38 -0.9 43,560 + BACOVA_00909 0.38 -0.2 43,561 - BACOVA_00909 0.38 +1.6 43,561 - BACOVA_00909 0.38 -0.4 43,561 - BACOVA_00909 0.38 +1.9 43,562 + BACOVA_00909 0.38 +1.1 43,562 + BACOVA_00909 0.38 +0.5 43,562 + BACOVA_00909 0.38 -0.5 43,679 + BACOVA_00909 0.51 +0.1 43,680 - BACOVA_00909 0.51 -0.3 43,680 - BACOVA_00909 0.51 +0.1 43,680 - BACOVA_00909 0.51 -1.3 43,711 + BACOVA_00909 0.54 -1.1 43,712 - BACOVA_00909 0.55 +0.4 43,757 + BACOVA_00909 0.59 +0.9 43,758 - BACOVA_00909 0.60 -0.4 43,758 - BACOVA_00909 0.60 -2.6 43,836 - BACOVA_00909 0.68 -0.4 43,844 + BACOVA_00909 0.69 -0.3 43,883 - BACOVA_00909 0.73 +0.5 43,907 - BACOVA_00909 0.76 -0.4 43,912 + BACOVA_00909 0.76 -0.3 43,912 + BACOVA_00909 0.76 -0.4 43,912 + BACOVA_00909 0.76 -0.9 43,913 - BACOVA_00909 0.76 -0.1 43,929 + BACOVA_00909 0.78 +0.0 43,960 - BACOVA_00909 0.81 +1.5 44,006 - BACOVA_00909 0.86 +0.8 44,032 - BACOVA_00909 0.89 +1.0 44,041 + -0.8
Or see this region's nucleotide sequence