Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04235

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04234 and BACOVA_04235 are separated by 4 nucleotidesBACOVA_04235 and BACOVA_04236 are separated by 178 nucleotidesBACOVA_04236 and BACOVA_04237 are separated by 21 nucleotides BACOVA_04234: BACOVA_04234 - site-specific recombinase, phage integrase family, at 115,861 to 116,799 _04234 BACOVA_04235: BACOVA_04235 - hypothetical protein, at 116,804 to 116,911 _04235 BACOVA_04236: BACOVA_04236 - hypothetical protein, at 117,090 to 117,248 _04236 BACOVA_04237: BACOVA_04237 - hypothetical protein, at 117,270 to 120,287 _04237 Position (kb) 116 117Strain fitness (log2 ratio) -1 0 1 2at 115.911 kb on + strandat 115.932 kb on + strandat 115.953 kb on - strandat 116.022 kb on - strand, within BACOVA_04234at 116.022 kb on - strand, within BACOVA_04234at 116.192 kb on + strand, within BACOVA_04234at 116.202 kb on + strand, within BACOVA_04234at 116.220 kb on - strand, within BACOVA_04234at 116.220 kb on - strand, within BACOVA_04234at 116.228 kb on - strand, within BACOVA_04234at 116.281 kb on - strand, within BACOVA_04234at 116.281 kb on - strand, within BACOVA_04234at 116.296 kb on + strand, within BACOVA_04234at 116.296 kb on + strand, within BACOVA_04234at 116.299 kb on + strand, within BACOVA_04234at 116.299 kb on + strand, within BACOVA_04234at 116.352 kb on + strand, within BACOVA_04234at 116.399 kb on - strand, within BACOVA_04234at 116.422 kb on - strand, within BACOVA_04234at 116.452 kb on - strand, within BACOVA_04234at 116.475 kb on + strand, within BACOVA_04234at 116.498 kb on + strand, within BACOVA_04234at 116.498 kb on + strand, within BACOVA_04234at 116.499 kb on - strand, within BACOVA_04234at 116.525 kb on + strand, within BACOVA_04234at 116.525 kb on + strand, within BACOVA_04234at 116.525 kb on + strand, within BACOVA_04234at 116.526 kb on - strand, within BACOVA_04234at 116.526 kb on - strand, within BACOVA_04234at 116.583 kb on - strand, within BACOVA_04234at 116.583 kb on - strand, within BACOVA_04234at 116.583 kb on - strand, within BACOVA_04234at 116.626 kb on + strand, within BACOVA_04234at 116.691 kb on - strand, within BACOVA_04234at 116.778 kb on + strandat 116.778 kb on + strandat 116.788 kb on + strandat 116.835 kb on - strand, within BACOVA_04235at 116.866 kb on - strand, within BACOVA_04235at 116.894 kb on + strand, within BACOVA_04235at 116.907 kb on - strandat 116.920 kb on + strandat 116.981 kb on - strandat 116.984 kb on + strandat 117.003 kb on - strandat 117.015 kb on + strandat 117.049 kb on + strandat 117.092 kb on - strandat 117.092 kb on - strandat 117.096 kb on - strandat 117.178 kb on - strand, within BACOVA_04236at 117.178 kb on - strand, within BACOVA_04236at 117.209 kb on - strand, within BACOVA_04236at 117.209 kb on - strand, within BACOVA_04236at 117.212 kb on + strand, within BACOVA_04236at 117.212 kb on + strand, within BACOVA_04236at 117.213 kb on - strand, within BACOVA_04236at 117.241 kb on + strandat 117.242 kb on - strandat 117.255 kb on + strandat 117.256 kb on - strandat 117.256 kb on - strandat 117.257 kb on + strandat 117.258 kb on - strandat 117.258 kb on - strandat 117.258 kb on - strandat 117.275 kb on + strandat 117.275 kb on + strandat 117.282 kb on - strandat 117.312 kb on - strandat 117.312 kb on - strandat 117.320 kb on + strandat 117.359 kb on + strandat 117.359 kb on + strandat 117.371 kb on + strandat 117.372 kb on - strandat 117.434 kb on + strandat 117.446 kb on + strandat 117.505 kb on + strandat 117.509 kb on + strandat 117.510 kb on - strandat 117.510 kb on - strandat 117.515 kb on + strandat 117.515 kb on + strandat 117.516 kb on - strandat 117.516 kb on - strandat 117.529 kb on + strandat 117.530 kb on - strandat 117.549 kb on - strandat 117.668 kb on + strand, within BACOVA_04237at 117.669 kb on - strand, within BACOVA_04237at 117.669 kb on - strand, within BACOVA_04237at 117.674 kb on + strand, within BACOVA_04237at 117.675 kb on - strand, within BACOVA_04237at 117.762 kb on - strand, within BACOVA_04237at 117.785 kb on - strand, within BACOVA_04237at 117.801 kb on + strand, within BACOVA_04237at 117.806 kb on + strand, within BACOVA_04237at 117.806 kb on + strand, within BACOVA_04237at 117.860 kb on + strand, within BACOVA_04237at 117.863 kb on + strand, within BACOVA_04237at 117.864 kb on - strand, within BACOVA_04237at 117.864 kb on - strand, within BACOVA_04237at 117.896 kb on + strand, within BACOVA_04237at 117.903 kb on - strand, within BACOVA_04237at 117.907 kb on - strand, within BACOVA_04237

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
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115,911 + -0.2
115,932 + +0.7
115,953 - -0.8
116,022 - BACOVA_04234 0.17 -0.4
116,022 - BACOVA_04234 0.17 -0.3
116,192 + BACOVA_04234 0.35 +0.6
116,202 + BACOVA_04234 0.36 +0.5
116,220 - BACOVA_04234 0.38 -1.2
116,220 - BACOVA_04234 0.38 -1.4
116,228 - BACOVA_04234 0.39 -0.4
116,281 - BACOVA_04234 0.45 +0.3
116,281 - BACOVA_04234 0.45 -0.1
116,296 + BACOVA_04234 0.46 +0.2
116,296 + BACOVA_04234 0.46 -0.9
116,299 + BACOVA_04234 0.47 -0.3
116,299 + BACOVA_04234 0.47 +0.8
116,352 + BACOVA_04234 0.52 -1.3
116,399 - BACOVA_04234 0.57 +0.6
116,422 - BACOVA_04234 0.60 -0.2
116,452 - BACOVA_04234 0.63 -0.1
116,475 + BACOVA_04234 0.65 +0.1
116,498 + BACOVA_04234 0.68 +1.1
116,498 + BACOVA_04234 0.68 +1.1
116,499 - BACOVA_04234 0.68 +0.3
116,525 + BACOVA_04234 0.71 -0.1
116,525 + BACOVA_04234 0.71 +0.5
116,525 + BACOVA_04234 0.71 +0.2
116,526 - BACOVA_04234 0.71 +1.6
116,526 - BACOVA_04234 0.71 +0.3
116,583 - BACOVA_04234 0.77 +0.9
116,583 - BACOVA_04234 0.77 +0.0
116,583 - BACOVA_04234 0.77 +0.1
116,626 + BACOVA_04234 0.81 -1.0
116,691 - BACOVA_04234 0.88 +0.6
116,778 + -0.4
116,778 + -0.9
116,788 + +1.2
116,835 - BACOVA_04235 0.29 -0.2
116,866 - BACOVA_04235 0.57 -0.3
116,894 + BACOVA_04235 0.83 -1.3
116,907 - +0.5
116,920 + -1.1
116,981 - -0.9
116,984 + -0.2
117,003 - -0.1
117,015 + +0.2
117,049 + -0.4
117,092 - -0.7
117,092 - -0.6
117,096 - -0.9
117,178 - BACOVA_04236 0.55 +2.3
117,178 - BACOVA_04236 0.55 +1.7
117,209 - BACOVA_04236 0.75 +0.3
117,209 - BACOVA_04236 0.75 +1.7
117,212 + BACOVA_04236 0.77 -0.1
117,212 + BACOVA_04236 0.77 -0.4
117,213 - BACOVA_04236 0.77 +1.9
117,241 + -0.7
117,242 - +1.4
117,255 + +0.7
117,256 - +1.3
117,256 - +1.0
117,257 + -0.2
117,258 - +1.8
117,258 - +2.0
117,258 - +2.4
117,275 + +0.5
117,275 + +0.8
117,282 - +1.3
117,312 - +1.1
117,312 - +1.2
117,320 + -1.1
117,359 + -0.4
117,359 + +0.0
117,371 + +1.1
117,372 - +1.6
117,434 + -1.5
117,446 + -0.5
117,505 + +1.8
117,509 + +1.8
117,510 - +0.3
117,510 - +2.4
117,515 + +0.2
117,515 + -0.4
117,516 - +0.5
117,516 - +0.7
117,529 + +0.6
117,530 - +1.1
117,549 - +0.9
117,668 + BACOVA_04237 0.13 -1.1
117,669 - BACOVA_04237 0.13 +1.0
117,669 - BACOVA_04237 0.13 +0.6
117,674 + BACOVA_04237 0.13 +0.8
117,675 - BACOVA_04237 0.13 +2.1
117,762 - BACOVA_04237 0.16 +1.7
117,785 - BACOVA_04237 0.17 +2.6
117,801 + BACOVA_04237 0.18 +0.5
117,806 + BACOVA_04237 0.18 +0.4
117,806 + BACOVA_04237 0.18 -0.7
117,860 + BACOVA_04237 0.20 +1.4
117,863 + BACOVA_04237 0.20 -0.6
117,864 - BACOVA_04237 0.20 +1.3
117,864 - BACOVA_04237 0.20 +0.5
117,896 + BACOVA_04237 0.21 -0.2
117,903 - BACOVA_04237 0.21 +1.6
117,907 - BACOVA_04237 0.21 +0.9

Or see this region's nucleotide sequence