Experiment: Pectic galactan from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03023 and BACOVA_03024 are separated by 132 nucleotides BACOVA_03024 and BACOVA_03025 overlap by 4 nucleotides BACOVA_03025 and BACOVA_03026 are separated by 12 nucleotides
BACOVA_03023: BACOVA_03023 - threonine synthase, at 99,171 to 100,472
_03023
BACOVA_03024: BACOVA_03024 - thiamine diphosphokinase, at 100,605 to 101,231
_03024
BACOVA_03025: BACOVA_03025 - nicotinamide mononucleotide transporter PnuC, at 101,228 to 101,839
_03025
BACOVA_03026: BACOVA_03026 - TonB-dependent receptor, at 101,852 to 104,101
_03026
Position (kb) 100
101
102 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 99.630 kb on - strand, within BACOVA_03023 at 99.630 kb on - strand, within BACOVA_03023 at 99.639 kb on + strand, within BACOVA_03023 at 99.640 kb on - strand, within BACOVA_03023 at 99.674 kb on - strand, within BACOVA_03023 at 99.693 kb on - strand, within BACOVA_03023 at 99.707 kb on + strand, within BACOVA_03023 at 99.708 kb on - strand, within BACOVA_03023 at 99.708 kb on - strand, within BACOVA_03023 at 99.711 kb on - strand, within BACOVA_03023 at 99.827 kb on - strand, within BACOVA_03023 at 99.827 kb on - strand, within BACOVA_03023 at 99.852 kb on + strand, within BACOVA_03023 at 99.855 kb on + strand, within BACOVA_03023 at 99.867 kb on + strand, within BACOVA_03023 at 99.868 kb on - strand, within BACOVA_03023 at 99.868 kb on - strand, within BACOVA_03023 at 99.899 kb on + strand, within BACOVA_03023 at 99.907 kb on + strand, within BACOVA_03023 at 99.916 kb on + strand, within BACOVA_03023 at 100.002 kb on - strand, within BACOVA_03023 at 100.026 kb on + strand, within BACOVA_03023 at 100.041 kb on - strand, within BACOVA_03023 at 100.044 kb on + strand, within BACOVA_03023 at 100.045 kb on - strand, within BACOVA_03023 at 100.061 kb on + strand, within BACOVA_03023 at 100.077 kb on - strand, within BACOVA_03023 at 100.082 kb on + strand, within BACOVA_03023 at 100.091 kb on - strand, within BACOVA_03023 at 100.126 kb on + strand, within BACOVA_03023 at 100.128 kb on + strand, within BACOVA_03023 at 100.129 kb on - strand, within BACOVA_03023 at 100.130 kb on + strand, within BACOVA_03023 at 100.148 kb on + strand, within BACOVA_03023 at 100.148 kb on + strand, within BACOVA_03023 at 100.149 kb on - strand, within BACOVA_03023 at 100.176 kb on + strand, within BACOVA_03023 at 100.177 kb on - strand, within BACOVA_03023 at 100.177 kb on - strand, within BACOVA_03023 at 100.230 kb on + strand, within BACOVA_03023 at 100.230 kb on + strand, within BACOVA_03023 at 100.231 kb on - strand, within BACOVA_03023 at 100.231 kb on - strand, within BACOVA_03023 at 100.304 kb on - strand, within BACOVA_03023 at 100.304 kb on - strand, within BACOVA_03023 at 100.456 kb on - strand at 100.485 kb on + strand at 100.571 kb on + strand at 100.581 kb on + strand at 100.600 kb on - strand at 100.601 kb on + strand at 100.602 kb on - strand at 100.609 kb on - strand at 100.610 kb on + strand at 100.611 kb on - strand at 100.611 kb on - strand at 100.611 kb on - strand at 100.611 kb on - strand at 100.617 kb on + strand at 100.618 kb on - strand at 100.631 kb on - strand at 100.652 kb on + strand at 100.652 kb on + strand at 100.659 kb on - strand at 100.710 kb on - strand, within BACOVA_03024 at 100.722 kb on + strand, within BACOVA_03024 at 100.764 kb on - strand, within BACOVA_03024 at 100.822 kb on + strand, within BACOVA_03024 at 100.824 kb on - strand, within BACOVA_03024 at 100.841 kb on + strand, within BACOVA_03024 at 100.842 kb on - strand, within BACOVA_03024 at 100.842 kb on - strand, within BACOVA_03024 at 100.842 kb on - strand, within BACOVA_03024 at 100.846 kb on - strand, within BACOVA_03024 at 100.894 kb on - strand, within BACOVA_03024 at 100.898 kb on + strand, within BACOVA_03024 at 101.014 kb on - strand, within BACOVA_03024 at 101.019 kb on - strand, within BACOVA_03024 at 101.037 kb on - strand, within BACOVA_03024 at 101.038 kb on + strand, within BACOVA_03024 at 101.074 kb on - strand, within BACOVA_03024 at 101.074 kb on - strand, within BACOVA_03024 at 101.085 kb on - strand, within BACOVA_03024 at 101.101 kb on + strand, within BACOVA_03024 at 101.101 kb on + strand, within BACOVA_03024 at 101.101 kb on + strand, within BACOVA_03024 at 101.101 kb on + strand, within BACOVA_03024 at 101.102 kb on - strand, within BACOVA_03024 at 101.131 kb on - strand, within BACOVA_03024 at 101.131 kb on - strand, within BACOVA_03024 at 101.215 kb on + strand at 101.215 kb on + strand at 101.216 kb on - strand at 101.216 kb on - strand at 101.234 kb on + strand at 101.234 kb on + strand at 101.234 kb on + strand at 101.243 kb on + strand at 101.276 kb on + strand at 101.277 kb on - strand at 101.325 kb on + strand, within BACOVA_03025 at 101.326 kb on - strand, within BACOVA_03025 at 101.332 kb on - strand, within BACOVA_03025 at 101.332 kb on - strand, within BACOVA_03025 at 101.407 kb on + strand, within BACOVA_03025 at 101.407 kb on + strand, within BACOVA_03025 at 101.432 kb on - strand, within BACOVA_03025 at 101.432 kb on - strand, within BACOVA_03025 at 101.437 kb on + strand, within BACOVA_03025 at 101.464 kb on + strand, within BACOVA_03025 at 101.465 kb on - strand, within BACOVA_03025 at 101.466 kb on + strand, within BACOVA_03025 at 101.466 kb on + strand, within BACOVA_03025 at 101.467 kb on - strand, within BACOVA_03025 at 101.471 kb on + strand, within BACOVA_03025 at 101.472 kb on - strand, within BACOVA_03025 at 101.478 kb on - strand, within BACOVA_03025 at 101.549 kb on + strand, within BACOVA_03025 at 101.549 kb on + strand, within BACOVA_03025 at 101.661 kb on - strand, within BACOVA_03025 at 101.668 kb on - strand, within BACOVA_03025 at 101.670 kb on + strand, within BACOVA_03025 at 101.671 kb on - strand, within BACOVA_03025 at 101.671 kb on - strand, within BACOVA_03025 at 101.674 kb on + strand, within BACOVA_03025 at 101.675 kb on - strand, within BACOVA_03025 at 101.694 kb on + strand, within BACOVA_03025 at 101.694 kb on + strand, within BACOVA_03025 at 101.694 kb on + strand, within BACOVA_03025 at 101.709 kb on + strand, within BACOVA_03025 at 101.709 kb on + strand, within BACOVA_03025 at 101.715 kb on - strand, within BACOVA_03025 at 101.715 kb on - strand, within BACOVA_03025 at 101.725 kb on - strand, within BACOVA_03025 at 101.764 kb on + strand, within BACOVA_03025 at 101.764 kb on + strand, within BACOVA_03025 at 101.790 kb on + strand at 101.791 kb on - strand at 101.817 kb on - strand at 101.839 kb on + strand at 102.008 kb on + strand at 102.075 kb on + strand at 102.079 kb on + strand, within BACOVA_03026 at 102.117 kb on + strand, within BACOVA_03026 at 102.118 kb on - strand, within BACOVA_03026 at 102.118 kb on - strand, within BACOVA_03026 at 102.163 kb on + strand, within BACOVA_03026 at 102.164 kb on - strand, within BACOVA_03026 at 102.166 kb on - strand, within BACOVA_03026 at 102.191 kb on + strand, within BACOVA_03026
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C) remove 99,630 - BACOVA_03023 0.35 -2.8 99,630 - BACOVA_03023 0.35 -2.3 99,639 + BACOVA_03023 0.36 -2.8 99,640 - BACOVA_03023 0.36 -4.0 99,674 - BACOVA_03023 0.39 -4.9 99,693 - BACOVA_03023 0.40 -5.2 99,707 + BACOVA_03023 0.41 -3.6 99,708 - BACOVA_03023 0.41 -4.7 99,708 - BACOVA_03023 0.41 -0.9 99,711 - BACOVA_03023 0.41 -1.7 99,827 - BACOVA_03023 0.50 -3.8 99,827 - BACOVA_03023 0.50 -4.0 99,852 + BACOVA_03023 0.52 -3.1 99,855 + BACOVA_03023 0.53 -4.3 99,867 + BACOVA_03023 0.53 -3.0 99,868 - BACOVA_03023 0.54 -1.9 99,868 - BACOVA_03023 0.54 -1.6 99,899 + BACOVA_03023 0.56 -4.9 99,907 + BACOVA_03023 0.57 -3.2 99,916 + BACOVA_03023 0.57 -3.3 100,002 - BACOVA_03023 0.64 -4.5 100,026 + BACOVA_03023 0.66 -2.9 100,041 - BACOVA_03023 0.67 -3.1 100,044 + BACOVA_03023 0.67 -2.3 100,045 - BACOVA_03023 0.67 -3.5 100,061 + BACOVA_03023 0.68 -2.4 100,077 - BACOVA_03023 0.70 -2.8 100,082 + BACOVA_03023 0.70 -1.7 100,091 - BACOVA_03023 0.71 -3.9 100,126 + BACOVA_03023 0.73 -1.8 100,128 + BACOVA_03023 0.74 -1.4 100,129 - BACOVA_03023 0.74 -1.8 100,130 + BACOVA_03023 0.74 -4.1 100,148 + BACOVA_03023 0.75 -2.9 100,148 + BACOVA_03023 0.75 -4.4 100,149 - BACOVA_03023 0.75 -3.7 100,176 + BACOVA_03023 0.77 -2.7 100,177 - BACOVA_03023 0.77 -3.4 100,177 - BACOVA_03023 0.77 -4.7 100,230 + BACOVA_03023 0.81 -2.0 100,230 + BACOVA_03023 0.81 -4.7 100,231 - BACOVA_03023 0.81 -2.3 100,231 - BACOVA_03023 0.81 -2.7 100,304 - BACOVA_03023 0.87 -1.1 100,304 - BACOVA_03023 0.87 -4.1 100,456 - -4.6 100,485 + +0.2 100,571 + -0.1 100,581 + -0.2 100,600 - +2.4 100,601 + -0.9 100,602 - +1.0 100,609 - +1.0 100,610 + -1.9 100,611 - +0.8 100,611 - -0.1 100,611 - -1.1 100,611 - +0.5 100,617 + -0.1 100,618 - -0.4 100,631 - +0.4 100,652 + -1.1 100,652 + -1.2 100,659 - +0.6 100,710 - BACOVA_03024 0.17 -1.0 100,722 + BACOVA_03024 0.19 -0.9 100,764 - BACOVA_03024 0.25 +0.6 100,822 + BACOVA_03024 0.35 -0.8 100,824 - BACOVA_03024 0.35 +0.3 100,841 + BACOVA_03024 0.38 -0.7 100,842 - BACOVA_03024 0.38 -1.0 100,842 - BACOVA_03024 0.38 -0.3 100,842 - BACOVA_03024 0.38 -0.2 100,846 - BACOVA_03024 0.38 -0.9 100,894 - BACOVA_03024 0.46 -0.9 100,898 + BACOVA_03024 0.47 -0.3 101,014 - BACOVA_03024 0.65 -1.4 101,019 - BACOVA_03024 0.66 -0.8 101,037 - BACOVA_03024 0.69 -0.5 101,038 + BACOVA_03024 0.69 +0.9 101,074 - BACOVA_03024 0.75 +0.3 101,074 - BACOVA_03024 0.75 -0.3 101,085 - BACOVA_03024 0.77 -1.2 101,101 + BACOVA_03024 0.79 -0.5 101,101 + BACOVA_03024 0.79 +1.4 101,101 + BACOVA_03024 0.79 +1.2 101,101 + BACOVA_03024 0.79 +0.6 101,102 - BACOVA_03024 0.79 +1.6 101,131 - BACOVA_03024 0.84 -1.9 101,131 - BACOVA_03024 0.84 +1.4 101,215 + +0.7 101,215 + -0.5 101,216 - -0.1 101,216 - -2.1 101,234 + -0.7 101,234 + +0.0 101,234 + +0.3 101,243 + -0.9 101,276 + +0.3 101,277 - -0.3 101,325 + BACOVA_03025 0.16 -0.3 101,326 - BACOVA_03025 0.16 -1.7 101,332 - BACOVA_03025 0.17 -0.7 101,332 - BACOVA_03025 0.17 -0.2 101,407 + BACOVA_03025 0.29 -0.2 101,407 + BACOVA_03025 0.29 +1.4 101,432 - BACOVA_03025 0.33 -1.6 101,432 - BACOVA_03025 0.33 -0.6 101,437 + BACOVA_03025 0.34 +1.0 101,464 + BACOVA_03025 0.39 +1.9 101,465 - BACOVA_03025 0.39 -0.9 101,466 + BACOVA_03025 0.39 -0.1 101,466 + BACOVA_03025 0.39 +0.1 101,467 - BACOVA_03025 0.39 -0.3 101,471 + BACOVA_03025 0.40 -1.6 101,472 - BACOVA_03025 0.40 -1.0 101,478 - BACOVA_03025 0.41 -1.6 101,549 + BACOVA_03025 0.52 -2.2 101,549 + BACOVA_03025 0.52 +0.3 101,661 - BACOVA_03025 0.71 +0.2 101,668 - BACOVA_03025 0.72 +0.4 101,670 + BACOVA_03025 0.72 +1.0 101,671 - BACOVA_03025 0.72 -0.7 101,671 - BACOVA_03025 0.72 -0.5 101,674 + BACOVA_03025 0.73 -0.5 101,675 - BACOVA_03025 0.73 +1.2 101,694 + BACOVA_03025 0.76 -0.8 101,694 + BACOVA_03025 0.76 -0.3 101,694 + BACOVA_03025 0.76 -0.7 101,709 + BACOVA_03025 0.79 +0.6 101,709 + BACOVA_03025 0.79 +0.7 101,715 - BACOVA_03025 0.80 +0.2 101,715 - BACOVA_03025 0.80 +0.4 101,725 - BACOVA_03025 0.81 +0.2 101,764 + BACOVA_03025 0.88 -1.3 101,764 + BACOVA_03025 0.88 -2.7 101,790 + -0.5 101,791 - +1.1 101,817 - -0.0 101,839 + -1.9 102,008 + -2.2 102,075 + +0.9 102,079 + BACOVA_03026 0.10 -1.2 102,117 + BACOVA_03026 0.12 -2.5 102,118 - BACOVA_03026 0.12 -0.8 102,118 - BACOVA_03026 0.12 -1.1 102,163 + BACOVA_03026 0.14 -0.6 102,164 - BACOVA_03026 0.14 -0.7 102,166 - BACOVA_03026 0.14 +0.9 102,191 + BACOVA_03026 0.15 +1.2
Or see this region's nucleotide sequence