Experiment: Pectic galactan from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00588 and BACOVA_00589 are separated by 62 nucleotides BACOVA_00589 and BACOVA_00590 overlap by 33 nucleotides
BACOVA_00588: BACOVA_00588 - hypothetical protein, at 24,017 to 25,633
_00588
BACOVA_00589: BACOVA_00589 - putative endoribonuclease L-PSP, at 25,696 to 26,103
_00589
BACOVA_00590: BACOVA_00590 - bifunctional protein FolC, at 26,071 to 27,561
_00590
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 24.764 kb on + strand, within BACOVA_00588 at 24.764 kb on + strand, within BACOVA_00588 at 24.886 kb on + strand, within BACOVA_00588 at 24.889 kb on + strand, within BACOVA_00588 at 24.889 kb on + strand, within BACOVA_00588 at 24.890 kb on - strand, within BACOVA_00588 at 24.892 kb on - strand, within BACOVA_00588 at 24.900 kb on + strand, within BACOVA_00588 at 24.956 kb on - strand, within BACOVA_00588 at 24.977 kb on + strand, within BACOVA_00588 at 24.977 kb on + strand, within BACOVA_00588 at 24.977 kb on + strand, within BACOVA_00588 at 24.981 kb on - strand, within BACOVA_00588 at 24.987 kb on - strand, within BACOVA_00588 at 25.022 kb on + strand, within BACOVA_00588 at 25.023 kb on - strand, within BACOVA_00588 at 25.026 kb on + strand, within BACOVA_00588 at 25.026 kb on + strand, within BACOVA_00588 at 25.026 kb on + strand, within BACOVA_00588 at 25.027 kb on - strand, within BACOVA_00588 at 25.041 kb on - strand, within BACOVA_00588 at 25.069 kb on + strand, within BACOVA_00588 at 25.102 kb on - strand, within BACOVA_00588 at 25.106 kb on + strand, within BACOVA_00588 at 25.167 kb on + strand, within BACOVA_00588 at 25.202 kb on - strand, within BACOVA_00588 at 25.205 kb on + strand, within BACOVA_00588 at 25.205 kb on + strand, within BACOVA_00588 at 25.317 kb on + strand, within BACOVA_00588 at 25.341 kb on + strand, within BACOVA_00588 at 25.420 kb on + strand, within BACOVA_00588 at 25.421 kb on - strand, within BACOVA_00588 at 25.444 kb on + strand, within BACOVA_00588 at 25.444 kb on + strand, within BACOVA_00588 at 25.445 kb on - strand, within BACOVA_00588 at 25.445 kb on - strand, within BACOVA_00588 at 25.503 kb on - strand at 25.562 kb on + strand at 25.562 kb on + strand at 25.562 kb on + strand at 25.594 kb on + strand at 25.605 kb on - strand at 25.610 kb on + strand at 25.610 kb on + strand at 25.611 kb on - strand at 25.617 kb on + strand at 25.617 kb on + strand at 25.618 kb on - strand at 25.622 kb on - strand at 25.622 kb on - strand at 25.622 kb on - strand at 25.647 kb on - strand at 25.724 kb on + strand at 25.724 kb on + strand at 25.727 kb on - strand at 25.728 kb on + strand at 25.739 kb on + strand, within BACOVA_00589 at 25.778 kb on - strand, within BACOVA_00589 at 25.791 kb on - strand, within BACOVA_00589 at 25.808 kb on + strand, within BACOVA_00589 at 25.809 kb on - strand, within BACOVA_00589 at 25.809 kb on - strand, within BACOVA_00589 at 25.809 kb on - strand, within BACOVA_00589 at 25.831 kb on - strand, within BACOVA_00589 at 25.896 kb on + strand, within BACOVA_00589 at 25.969 kb on - strand, within BACOVA_00589 at 25.969 kb on - strand, within BACOVA_00589 at 25.969 kb on - strand, within BACOVA_00589 at 26.000 kb on - strand, within BACOVA_00589 at 26.009 kb on - strand, within BACOVA_00589 at 26.073 kb on - strand at 26.075 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C) remove 24,764 + BACOVA_00588 0.46 -0.1 24,764 + BACOVA_00588 0.46 +0.9 24,886 + BACOVA_00588 0.54 +0.3 24,889 + BACOVA_00588 0.54 -1.5 24,889 + BACOVA_00588 0.54 +0.6 24,890 - BACOVA_00588 0.54 -0.1 24,892 - BACOVA_00588 0.54 -0.3 24,900 + BACOVA_00588 0.55 -0.2 24,956 - BACOVA_00588 0.58 -0.3 24,977 + BACOVA_00588 0.59 -0.3 24,977 + BACOVA_00588 0.59 -0.4 24,977 + BACOVA_00588 0.59 +0.4 24,981 - BACOVA_00588 0.60 -0.9 24,987 - BACOVA_00588 0.60 +0.1 25,022 + BACOVA_00588 0.62 -0.7 25,023 - BACOVA_00588 0.62 -1.0 25,026 + BACOVA_00588 0.62 -2.3 25,026 + BACOVA_00588 0.62 +0.2 25,026 + BACOVA_00588 0.62 +0.4 25,027 - BACOVA_00588 0.62 -1.6 25,041 - BACOVA_00588 0.63 -0.6 25,069 + BACOVA_00588 0.65 -1.1 25,102 - BACOVA_00588 0.67 -1.3 25,106 + BACOVA_00588 0.67 -0.5 25,167 + BACOVA_00588 0.71 -0.4 25,202 - BACOVA_00588 0.73 -0.3 25,205 + BACOVA_00588 0.73 -0.4 25,205 + BACOVA_00588 0.73 -0.4 25,317 + BACOVA_00588 0.80 +0.5 25,341 + BACOVA_00588 0.82 -0.3 25,420 + BACOVA_00588 0.87 +0.3 25,421 - BACOVA_00588 0.87 -0.1 25,444 + BACOVA_00588 0.88 -2.3 25,444 + BACOVA_00588 0.88 +0.5 25,445 - BACOVA_00588 0.88 +1.0 25,445 - BACOVA_00588 0.88 -0.1 25,503 - +0.7 25,562 + -0.8 25,562 + +0.2 25,562 + +1.4 25,594 + +0.4 25,605 - +1.4 25,610 + -0.2 25,610 + -0.1 25,611 - +0.5 25,617 + +0.3 25,617 + -1.0 25,618 - +0.7 25,622 - -0.3 25,622 - +0.6 25,622 - -0.9 25,647 - -0.3 25,724 + +0.8 25,724 + -0.8 25,727 - -1.2 25,728 + -1.6 25,739 + BACOVA_00589 0.11 -1.2 25,778 - BACOVA_00589 0.20 -1.4 25,791 - BACOVA_00589 0.23 -0.5 25,808 + BACOVA_00589 0.27 +0.1 25,809 - BACOVA_00589 0.28 -1.6 25,809 - BACOVA_00589 0.28 -0.5 25,809 - BACOVA_00589 0.28 +1.0 25,831 - BACOVA_00589 0.33 -1.1 25,896 + BACOVA_00589 0.49 -3.5 25,969 - BACOVA_00589 0.67 +0.1 25,969 - BACOVA_00589 0.67 -1.3 25,969 - BACOVA_00589 0.67 -0.6 26,000 - BACOVA_00589 0.75 -0.6 26,009 - BACOVA_00589 0.77 -1.5 26,073 - -0.4 26,075 + +1.2
Or see this region's nucleotide sequence