Experiment: Pectic galactan from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00518 and BACOVA_00519 are separated by 262 nucleotides BACOVA_00519 and BACOVA_00520 are separated by 214 nucleotides BACOVA_00520 and BACOVA_00521 overlap by 26 nucleotides
BACOVA_00518: BACOVA_00518 - TrkA C-terminal domain protein, at 16,167 to 17,831
_00518
BACOVA_00519: BACOVA_00519 - hypothetical protein, at 18,094 to 18,537
_00519
BACOVA_00520: BACOVA_00520 - ATPase family associated with various cellular activities (AAA), at 18,752 to 20,326
_00520
BACOVA_00521: BACOVA_00521 - hypothetical protein, at 20,301 to 21,728
_00521
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 17.818 kb on + strand at 17.818 kb on + strand at 17.819 kb on - strand at 17.820 kb on + strand at 17.820 kb on + strand at 17.820 kb on + strand at 17.835 kb on + strand at 17.836 kb on - strand at 17.837 kb on + strand at 17.837 kb on + strand at 17.917 kb on - strand at 17.928 kb on + strand at 17.929 kb on - strand at 17.943 kb on + strand at 17.950 kb on + strand at 17.984 kb on + strand at 17.987 kb on + strand at 17.988 kb on - strand at 18.007 kb on + strand at 18.145 kb on + strand, within BACOVA_00519 at 18.164 kb on + strand, within BACOVA_00519 at 18.165 kb on - strand, within BACOVA_00519 at 18.165 kb on - strand, within BACOVA_00519 at 18.167 kb on - strand, within BACOVA_00519 at 18.201 kb on - strand, within BACOVA_00519 at 18.207 kb on + strand, within BACOVA_00519 at 18.207 kb on + strand, within BACOVA_00519 at 18.208 kb on - strand, within BACOVA_00519 at 18.228 kb on - strand, within BACOVA_00519 at 18.254 kb on + strand, within BACOVA_00519 at 18.260 kb on + strand, within BACOVA_00519 at 18.285 kb on - strand, within BACOVA_00519 at 18.296 kb on - strand, within BACOVA_00519 at 18.297 kb on + strand, within BACOVA_00519 at 18.347 kb on + strand, within BACOVA_00519 at 18.347 kb on + strand, within BACOVA_00519 at 18.351 kb on + strand, within BACOVA_00519 at 18.375 kb on + strand, within BACOVA_00519 at 18.385 kb on - strand, within BACOVA_00519 at 18.412 kb on - strand, within BACOVA_00519 at 18.413 kb on + strand, within BACOVA_00519 at 18.413 kb on + strand, within BACOVA_00519 at 18.414 kb on - strand, within BACOVA_00519 at 18.490 kb on + strand, within BACOVA_00519 at 18.492 kb on + strand, within BACOVA_00519 at 18.498 kb on + strand at 18.520 kb on - strand at 18.520 kb on - strand at 18.591 kb on - strand at 18.601 kb on + strand at 18.660 kb on - strand at 18.841 kb on - strand at 18.844 kb on - strand at 18.866 kb on - strand at 18.873 kb on + strand at 18.953 kb on + strand, within BACOVA_00520 at 18.954 kb on - strand, within BACOVA_00520 at 19.031 kb on + strand, within BACOVA_00520 at 19.039 kb on + strand, within BACOVA_00520 at 19.042 kb on + strand, within BACOVA_00520 at 19.089 kb on + strand, within BACOVA_00520 at 19.131 kb on + strand, within BACOVA_00520 at 19.146 kb on + strand, within BACOVA_00520 at 19.147 kb on - strand, within BACOVA_00520 at 19.148 kb on + strand, within BACOVA_00520 at 19.148 kb on + strand, within BACOVA_00520 at 19.149 kb on - strand, within BACOVA_00520 at 19.149 kb on - strand, within BACOVA_00520 at 19.166 kb on - strand, within BACOVA_00520 at 19.242 kb on + strand, within BACOVA_00520 at 19.292 kb on + strand, within BACOVA_00520 at 19.330 kb on - strand, within BACOVA_00520 at 19.372 kb on - strand, within BACOVA_00520 at 19.372 kb on - strand, within BACOVA_00520 at 19.373 kb on + strand, within BACOVA_00520 at 19.383 kb on + strand, within BACOVA_00520 at 19.404 kb on + strand, within BACOVA_00520 at 19.405 kb on - strand, within BACOVA_00520 at 19.408 kb on + strand, within BACOVA_00520 at 19.409 kb on - strand, within BACOVA_00520 at 19.418 kb on - strand, within BACOVA_00520 at 19.442 kb on - strand, within BACOVA_00520 at 19.464 kb on - strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.466 kb on - strand, within BACOVA_00520 at 19.466 kb on - strand, within BACOVA_00520 at 19.500 kb on - strand, within BACOVA_00520 at 19.501 kb on + strand, within BACOVA_00520 at 19.501 kb on + strand, within BACOVA_00520 at 19.503 kb on + strand, within BACOVA_00520 at 19.504 kb on - strand, within BACOVA_00520 at 19.504 kb on - strand, within BACOVA_00520 at 19.681 kb on + strand, within BACOVA_00520 at 19.690 kb on - strand, within BACOVA_00520 at 19.723 kb on + strand, within BACOVA_00520 at 19.723 kb on + strand, within BACOVA_00520 at 19.724 kb on - strand, within BACOVA_00520 at 19.768 kb on + strand, within BACOVA_00520 at 19.768 kb on + strand, within BACOVA_00520 at 19.768 kb on + strand, within BACOVA_00520 at 19.791 kb on + strand, within BACOVA_00520 at 19.791 kb on + strand, within BACOVA_00520 at 19.791 kb on + strand, within BACOVA_00520 at 19.792 kb on - strand, within BACOVA_00520 at 19.796 kb on - strand, within BACOVA_00520 at 19.796 kb on - strand, within BACOVA_00520 at 19.803 kb on - strand, within BACOVA_00520 at 19.813 kb on - strand, within BACOVA_00520 at 19.985 kb on + strand, within BACOVA_00520 at 19.986 kb on - strand, within BACOVA_00520 at 20.033 kb on + strand, within BACOVA_00520 at 20.041 kb on - strand, within BACOVA_00520 at 20.043 kb on + strand, within BACOVA_00520 at 20.044 kb on - strand, within BACOVA_00520 at 20.044 kb on - strand, within BACOVA_00520 at 20.044 kb on - strand, within BACOVA_00520 at 20.048 kb on + strand, within BACOVA_00520 at 20.048 kb on + strand, within BACOVA_00520 at 20.048 kb on + strand, within BACOVA_00520 at 20.122 kb on - strand, within BACOVA_00520 at 20.122 kb on - strand, within BACOVA_00520 at 20.127 kb on + strand, within BACOVA_00520 at 20.145 kb on + strand, within BACOVA_00520 at 20.180 kb on + strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.182 kb on + strand at 20.182 kb on + strand at 20.202 kb on + strand at 20.239 kb on - strand at 20.254 kb on + strand at 20.255 kb on - strand at 20.260 kb on - strand at 20.260 kb on - strand at 20.260 kb on - strand at 20.371 kb on + strand at 20.377 kb on - strand at 20.398 kb on + strand at 20.398 kb on + strand at 20.512 kb on - strand, within BACOVA_00521 at 20.512 kb on - strand, within BACOVA_00521 at 20.619 kb on + strand, within BACOVA_00521 at 20.619 kb on + strand, within BACOVA_00521 at 20.641 kb on + strand, within BACOVA_00521 at 20.702 kb on + strand, within BACOVA_00521 at 20.703 kb on - strand, within BACOVA_00521 at 20.745 kb on - strand, within BACOVA_00521 at 20.745 kb on - strand, within BACOVA_00521 at 20.774 kb on + strand, within BACOVA_00521 at 20.846 kb on + strand, within BACOVA_00521 at 20.946 kb on - strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.994 kb on - strand, within BACOVA_00521 at 20.996 kb on - strand, within BACOVA_00521 at 21.050 kb on + strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.134 kb on - strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.255 kb on - strand, within BACOVA_00521 at 21.292 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C) remove 17,818 + -1.0 17,818 + -1.0 17,819 - -1.8 17,820 + -2.2 17,820 + -0.6 17,820 + -0.3 17,835 + -2.1 17,836 - -0.2 17,837 + -0.6 17,837 + -1.6 17,917 - +0.0 17,928 + +1.2 17,929 - +1.6 17,943 + -2.9 17,950 + +0.8 17,984 + -0.0 17,987 + +0.2 17,988 - +0.2 18,007 + +0.2 18,145 + BACOVA_00519 0.11 -2.6 18,164 + BACOVA_00519 0.16 -0.7 18,165 - BACOVA_00519 0.16 -1.9 18,165 - BACOVA_00519 0.16 -0.7 18,167 - BACOVA_00519 0.16 +2.0 18,201 - BACOVA_00519 0.24 -1.2 18,207 + BACOVA_00519 0.25 -0.4 18,207 + BACOVA_00519 0.25 -0.4 18,208 - BACOVA_00519 0.26 -0.8 18,228 - BACOVA_00519 0.30 -0.9 18,254 + BACOVA_00519 0.36 -0.8 18,260 + BACOVA_00519 0.37 +1.1 18,285 - BACOVA_00519 0.43 -1.7 18,296 - BACOVA_00519 0.45 -1.2 18,297 + BACOVA_00519 0.46 -0.1 18,347 + BACOVA_00519 0.57 +0.4 18,347 + BACOVA_00519 0.57 +0.3 18,351 + BACOVA_00519 0.58 -1.7 18,375 + BACOVA_00519 0.63 -1.5 18,385 - BACOVA_00519 0.66 +0.3 18,412 - BACOVA_00519 0.72 -0.3 18,413 + BACOVA_00519 0.72 -0.6 18,413 + BACOVA_00519 0.72 -1.1 18,414 - BACOVA_00519 0.72 +0.5 18,490 + BACOVA_00519 0.89 +0.4 18,492 + BACOVA_00519 0.90 -0.2 18,498 + +1.5 18,520 - -1.8 18,520 - +0.6 18,591 - -0.4 18,601 + -1.0 18,660 - -0.5 18,841 - -0.2 18,844 - +0.2 18,866 - -3.6 18,873 + +0.2 18,953 + BACOVA_00520 0.13 -0.5 18,954 - BACOVA_00520 0.13 -0.0 19,031 + BACOVA_00520 0.18 -0.4 19,039 + BACOVA_00520 0.18 -0.1 19,042 + BACOVA_00520 0.18 -0.2 19,089 + BACOVA_00520 0.21 -0.3 19,131 + BACOVA_00520 0.24 -2.7 19,146 + BACOVA_00520 0.25 +0.7 19,147 - BACOVA_00520 0.25 +3.0 19,148 + BACOVA_00520 0.25 -0.5 19,148 + BACOVA_00520 0.25 -0.4 19,149 - BACOVA_00520 0.25 +1.4 19,149 - BACOVA_00520 0.25 -1.3 19,166 - BACOVA_00520 0.26 -2.8 19,242 + BACOVA_00520 0.31 -0.4 19,292 + BACOVA_00520 0.34 -0.6 19,330 - BACOVA_00520 0.37 +0.1 19,372 - BACOVA_00520 0.39 -0.8 19,372 - BACOVA_00520 0.39 +0.8 19,373 + BACOVA_00520 0.39 +1.3 19,383 + BACOVA_00520 0.40 -2.0 19,404 + BACOVA_00520 0.41 +0.3 19,405 - BACOVA_00520 0.41 +1.0 19,408 + BACOVA_00520 0.42 -1.5 19,409 - BACOVA_00520 0.42 -1.4 19,418 - BACOVA_00520 0.42 +0.7 19,442 - BACOVA_00520 0.44 +1.0 19,464 - BACOVA_00520 0.45 -0.2 19,465 + BACOVA_00520 0.45 +0.3 19,465 + BACOVA_00520 0.45 +2.4 19,465 + BACOVA_00520 0.45 +0.9 19,465 + BACOVA_00520 0.45 +0.5 19,466 - BACOVA_00520 0.45 +0.7 19,466 - BACOVA_00520 0.45 -1.4 19,500 - BACOVA_00520 0.47 -1.0 19,501 + BACOVA_00520 0.48 +0.5 19,501 + BACOVA_00520 0.48 -2.7 19,503 + BACOVA_00520 0.48 +0.2 19,504 - BACOVA_00520 0.48 -0.8 19,504 - BACOVA_00520 0.48 +0.3 19,681 + BACOVA_00520 0.59 -0.7 19,690 - BACOVA_00520 0.60 -0.4 19,723 + BACOVA_00520 0.62 +0.7 19,723 + BACOVA_00520 0.62 -0.5 19,724 - BACOVA_00520 0.62 -0.2 19,768 + BACOVA_00520 0.65 +0.5 19,768 + BACOVA_00520 0.65 -0.0 19,768 + BACOVA_00520 0.65 +0.4 19,791 + BACOVA_00520 0.66 -0.7 19,791 + BACOVA_00520 0.66 -0.6 19,791 + BACOVA_00520 0.66 +0.2 19,792 - BACOVA_00520 0.66 -2.4 19,796 - BACOVA_00520 0.66 -1.2 19,796 - BACOVA_00520 0.66 +0.7 19,803 - BACOVA_00520 0.67 +0.2 19,813 - BACOVA_00520 0.67 +1.4 19,985 + BACOVA_00520 0.78 -1.2 19,986 - BACOVA_00520 0.78 -0.1 20,033 + BACOVA_00520 0.81 -0.4 20,041 - BACOVA_00520 0.82 +1.3 20,043 + BACOVA_00520 0.82 +0.6 20,044 - BACOVA_00520 0.82 -0.4 20,044 - BACOVA_00520 0.82 +0.5 20,044 - BACOVA_00520 0.82 +1.3 20,048 + BACOVA_00520 0.82 -0.6 20,048 + BACOVA_00520 0.82 +0.2 20,048 + BACOVA_00520 0.82 +1.7 20,122 - BACOVA_00520 0.87 -0.7 20,122 - BACOVA_00520 0.87 +0.7 20,127 + BACOVA_00520 0.87 +0.1 20,145 + BACOVA_00520 0.88 -0.2 20,180 + -0.2 20,181 - +1.0 20,181 - -0.1 20,181 - +0.3 20,182 + -0.8 20,182 + -0.0 20,202 + +0.4 20,239 - -0.6 20,254 + -1.2 20,255 - -0.8 20,260 - +1.2 20,260 - -0.6 20,260 - -0.1 20,371 + -1.4 20,377 - -0.0 20,398 + -0.2 20,398 + +0.4 20,512 - BACOVA_00521 0.15 -1.4 20,512 - BACOVA_00521 0.15 -1.7 20,619 + BACOVA_00521 0.22 +0.6 20,619 + BACOVA_00521 0.22 -0.1 20,641 + BACOVA_00521 0.24 +1.2 20,702 + BACOVA_00521 0.28 +1.0 20,703 - BACOVA_00521 0.28 +0.3 20,745 - BACOVA_00521 0.31 +0.8 20,745 - BACOVA_00521 0.31 +1.3 20,774 + BACOVA_00521 0.33 +0.0 20,846 + BACOVA_00521 0.38 +0.2 20,946 - BACOVA_00521 0.45 +0.0 20,993 + BACOVA_00521 0.48 -1.6 20,993 + BACOVA_00521 0.48 -0.0 20,994 - BACOVA_00521 0.49 -0.7 20,996 - BACOVA_00521 0.49 +1.6 21,050 + BACOVA_00521 0.52 +0.6 21,076 - BACOVA_00521 0.54 -0.3 21,076 - BACOVA_00521 0.54 +0.7 21,076 - BACOVA_00521 0.54 -1.1 21,134 - BACOVA_00521 0.58 -0.2 21,254 + BACOVA_00521 0.67 +0.2 21,254 + BACOVA_00521 0.67 -0.6 21,255 - BACOVA_00521 0.67 -0.3 21,292 + BACOVA_00521 0.69 -0.1 21,319 + BACOVA_00521 0.71 +1.5 21,319 + BACOVA_00521 0.71 -0.0 21,320 - BACOVA_00521 0.71 -0.5 21,320 - BACOVA_00521 0.71 -1.1
Or see this region's nucleotide sequence