Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01541

Experiment: b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01540 and BACOVA_01541 are separated by 41 nucleotidesBACOVA_01541 and BACOVA_01542 are separated by 31 nucleotides BACOVA_01540: BACOVA_01540 - OmpA family protein, at 37,491 to 38,660 _01540 BACOVA_01541: BACOVA_01541 - DNA-binding protein HU, at 38,702 to 38,968 _01541 BACOVA_01542: BACOVA_01542 - hypothetical protein, at 39,000 to 41,870 _01542 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 37.748 kb on + strand, within BACOVA_01540at 37.749 kb on - strand, within BACOVA_01540at 37.769 kb on + strand, within BACOVA_01540at 37.770 kb on - strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.946 kb on - strand, within BACOVA_01540at 37.999 kb on - strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.295 kb on + strand, within BACOVA_01540at 38.314 kb on + strand, within BACOVA_01540at 38.341 kb on + strand, within BACOVA_01540at 38.454 kb on - strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.499 kb on - strand, within BACOVA_01540at 38.523 kb on - strand, within BACOVA_01540at 38.525 kb on - strand, within BACOVA_01540at 38.571 kb on - strandat 38.571 kb on - strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.626 kb on - strandat 38.628 kb on + strandat 38.708 kb on + strandat 38.857 kb on + strand, within BACOVA_01541at 38.857 kb on + strand, within BACOVA_01541at 38.895 kb on - strand, within BACOVA_01541at 38.895 kb on - strand, within BACOVA_01541at 38.905 kb on + strand, within BACOVA_01541at 38.969 kb on - strandat 38.992 kb on - strandat 38.992 kb on - strandat 38.993 kb on + strandat 38.994 kb on - strandat 38.994 kb on - strandat 38.994 kb on - strandat 38.995 kb on + strandat 39.001 kb on + strandat 39.080 kb on - strandat 39.087 kb on - strandat 39.105 kb on - strandat 39.114 kb on + strandat 39.114 kb on + strandat 39.115 kb on - strandat 39.119 kb on + strandat 39.120 kb on - strandat 39.120 kb on - strandat 39.120 kb on - strandat 39.158 kb on + strandat 39.169 kb on - strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.171 kb on - strandat 39.172 kb on + strandat 39.172 kb on + strandat 39.173 kb on - strandat 39.191 kb on - strandat 39.226 kb on + strandat 39.227 kb on - strandat 39.281 kb on + strandat 39.336 kb on - strand, within BACOVA_01542at 39.365 kb on + strand, within BACOVA_01542at 39.367 kb on + strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.372 kb on + strand, within BACOVA_01542at 39.373 kb on - strand, within BACOVA_01542at 39.375 kb on + strand, within BACOVA_01542at 39.375 kb on + strand, within BACOVA_01542at 39.377 kb on + strand, within BACOVA_01542at 39.378 kb on - strand, within BACOVA_01542at 39.387 kb on + strand, within BACOVA_01542at 39.401 kb on - strand, within BACOVA_01542at 39.401 kb on - strand, within BACOVA_01542at 39.402 kb on + strand, within BACOVA_01542at 39.402 kb on + strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.418 kb on - strand, within BACOVA_01542at 39.422 kb on + strand, within BACOVA_01542at 39.423 kb on - strand, within BACOVA_01542at 39.423 kb on - strand, within BACOVA_01542at 39.445 kb on + strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.465 kb on + strand, within BACOVA_01542at 39.466 kb on - strand, within BACOVA_01542at 39.467 kb on + strand, within BACOVA_01542at 39.468 kb on - strand, within BACOVA_01542at 39.479 kb on + strand, within BACOVA_01542at 39.497 kb on + strand, within BACOVA_01542at 39.511 kb on + strand, within BACOVA_01542at 39.511 kb on + strand, within BACOVA_01542at 39.534 kb on - strand, within BACOVA_01542at 39.535 kb on + strand, within BACOVA_01542at 39.535 kb on + strand, within BACOVA_01542at 39.536 kb on - strand, within BACOVA_01542at 39.537 kb on - strand, within BACOVA_01542at 39.554 kb on + strand, within BACOVA_01542at 39.555 kb on - strand, within BACOVA_01542at 39.560 kb on + strand, within BACOVA_01542at 39.561 kb on - strand, within BACOVA_01542at 39.564 kb on - strand, within BACOVA_01542at 39.582 kb on + strand, within BACOVA_01542at 39.605 kb on + strand, within BACOVA_01542at 39.658 kb on + strand, within BACOVA_01542at 39.659 kb on - strand, within BACOVA_01542at 39.690 kb on + strand, within BACOVA_01542at 39.698 kb on + strand, within BACOVA_01542at 39.698 kb on + strand, within BACOVA_01542at 39.698 kb on + strand, within BACOVA_01542at 39.699 kb on - strand, within BACOVA_01542at 39.699 kb on - strand, within BACOVA_01542at 39.699 kb on - strand, within BACOVA_01542at 39.701 kb on - strand, within BACOVA_01542at 39.701 kb on - strand, within BACOVA_01542at 39.705 kb on - strand, within BACOVA_01542at 39.751 kb on + strand, within BACOVA_01542at 39.785 kb on + strand, within BACOVA_01542at 39.789 kb on - strand, within BACOVA_01542at 39.838 kb on + strand, within BACOVA_01542at 39.876 kb on - strand, within BACOVA_01542at 39.899 kb on + strand, within BACOVA_01542at 39.962 kb on + strand, within BACOVA_01542

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
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37,748 + BACOVA_01540 0.22 -0.7
37,749 - BACOVA_01540 0.22 +1.3
37,769 + BACOVA_01540 0.24 +0.9
37,770 - BACOVA_01540 0.24 +0.4
37,925 + BACOVA_01540 0.37 +0.8
37,925 + BACOVA_01540 0.37 +0.4
37,946 - BACOVA_01540 0.39 -0.3
37,999 - BACOVA_01540 0.43 +0.6
38,004 + BACOVA_01540 0.44 -0.3
38,004 + BACOVA_01540 0.44 +0.0
38,295 + BACOVA_01540 0.69 +0.8
38,314 + BACOVA_01540 0.70 -0.3
38,341 + BACOVA_01540 0.73 -0.2
38,454 - BACOVA_01540 0.82 +0.8
38,494 + BACOVA_01540 0.86 +0.7
38,494 + BACOVA_01540 0.86 -0.2
38,494 + BACOVA_01540 0.86 +1.0
38,494 + BACOVA_01540 0.86 -0.5
38,494 + BACOVA_01540 0.86 +0.7
38,499 - BACOVA_01540 0.86 -0.3
38,523 - BACOVA_01540 0.88 -0.4
38,525 - BACOVA_01540 0.88 +1.1
38,571 - -0.0
38,571 - +0.9
38,625 + +0.3
38,625 + -1.5
38,626 - +0.7
38,628 + +0.3
38,708 + +2.0
38,857 + BACOVA_01541 0.58 +0.9
38,857 + BACOVA_01541 0.58 -0.1
38,895 - BACOVA_01541 0.72 +1.3
38,895 - BACOVA_01541 0.72 +1.5
38,905 + BACOVA_01541 0.76 -0.4
38,969 - +0.8
38,992 - +2.0
38,992 - +0.8
38,993 + +0.0
38,994 - +1.2
38,994 - +1.1
38,994 - -1.2
38,995 + -1.8
39,001 + +0.7
39,080 - -0.5
39,087 - +1.0
39,105 - +0.4
39,114 + +0.9
39,114 + +0.0
39,115 - +0.3
39,119 + -0.1
39,120 - +0.2
39,120 - +0.8
39,120 - +1.3
39,158 + -0.6
39,169 - +0.8
39,170 + -0.1
39,170 + +0.5
39,170 + +0.0
39,170 + +0.6
39,170 + -0.2
39,171 - +0.9
39,172 + -0.9
39,172 + -0.0
39,173 - +0.8
39,191 - +0.5
39,226 + -0.0
39,227 - +0.7
39,281 + +0.0
39,336 - BACOVA_01542 0.12 -0.8
39,365 + BACOVA_01542 0.13 -0.9
39,367 + BACOVA_01542 0.13 +0.4
39,368 - BACOVA_01542 0.13 +0.6
39,368 - BACOVA_01542 0.13 +0.7
39,368 - BACOVA_01542 0.13 -1.0
39,372 + BACOVA_01542 0.13 +1.8
39,373 - BACOVA_01542 0.13 +1.5
39,375 + BACOVA_01542 0.13 -0.3
39,375 + BACOVA_01542 0.13 +0.4
39,377 + BACOVA_01542 0.13 +1.7
39,378 - BACOVA_01542 0.13 +0.4
39,387 + BACOVA_01542 0.13 -0.3
39,401 - BACOVA_01542 0.14 +0.7
39,401 - BACOVA_01542 0.14 +0.2
39,402 + BACOVA_01542 0.14 -0.7
39,402 + BACOVA_01542 0.14 -1.8
39,403 - BACOVA_01542 0.14 +1.7
39,403 - BACOVA_01542 0.14 +0.5
39,403 - BACOVA_01542 0.14 +1.2
39,403 - BACOVA_01542 0.14 +0.8
39,418 - BACOVA_01542 0.15 -0.5
39,422 + BACOVA_01542 0.15 -0.9
39,423 - BACOVA_01542 0.15 +0.3
39,423 - BACOVA_01542 0.15 +2.4
39,445 + BACOVA_01542 0.15 +0.4
39,446 - BACOVA_01542 0.16 +1.6
39,446 - BACOVA_01542 0.16 -0.7
39,446 - BACOVA_01542 0.16 -0.3
39,465 + BACOVA_01542 0.16 +0.7
39,466 - BACOVA_01542 0.16 +1.2
39,467 + BACOVA_01542 0.16 -0.4
39,468 - BACOVA_01542 0.16 +0.4
39,479 + BACOVA_01542 0.17 +1.4
39,497 + BACOVA_01542 0.17 -0.2
39,511 + BACOVA_01542 0.18 +1.3
39,511 + BACOVA_01542 0.18 +0.2
39,534 - BACOVA_01542 0.19 +0.9
39,535 + BACOVA_01542 0.19 +0.4
39,535 + BACOVA_01542 0.19 -1.5
39,536 - BACOVA_01542 0.19 +0.2
39,537 - BACOVA_01542 0.19 +0.7
39,554 + BACOVA_01542 0.19 -1.7
39,555 - BACOVA_01542 0.19 -0.5
39,560 + BACOVA_01542 0.20 +1.3
39,561 - BACOVA_01542 0.20 +0.2
39,564 - BACOVA_01542 0.20 +0.2
39,582 + BACOVA_01542 0.20 -1.5
39,605 + BACOVA_01542 0.21 +0.2
39,658 + BACOVA_01542 0.23 -0.7
39,659 - BACOVA_01542 0.23 +0.3
39,690 + BACOVA_01542 0.24 +2.3
39,698 + BACOVA_01542 0.24 +0.7
39,698 + BACOVA_01542 0.24 +0.5
39,698 + BACOVA_01542 0.24 +0.8
39,699 - BACOVA_01542 0.24 +0.2
39,699 - BACOVA_01542 0.24 +0.5
39,699 - BACOVA_01542 0.24 -0.1
39,701 - BACOVA_01542 0.24 +0.9
39,701 - BACOVA_01542 0.24 +0.4
39,705 - BACOVA_01542 0.25 +1.0
39,751 + BACOVA_01542 0.26 -0.5
39,785 + BACOVA_01542 0.27 -0.3
39,789 - BACOVA_01542 0.27 +0.2
39,838 + BACOVA_01542 0.29 -0.5
39,876 - BACOVA_01542 0.31 +1.2
39,899 + BACOVA_01542 0.31 +0.8
39,962 + BACOVA_01542 0.34 +0.3

Or see this region's nucleotide sequence