Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00589

Experiment: b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00588 and BACOVA_00589 are separated by 62 nucleotidesBACOVA_00589 and BACOVA_00590 overlap by 33 nucleotides BACOVA_00588: BACOVA_00588 - hypothetical protein, at 24,017 to 25,633 _00588 BACOVA_00589: BACOVA_00589 - putative endoribonuclease L-PSP, at 25,696 to 26,103 _00589 BACOVA_00590: BACOVA_00590 - bifunctional protein FolC, at 26,071 to 27,561 _00590 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 24.764 kb on + strand, within BACOVA_00588at 24.764 kb on + strand, within BACOVA_00588at 24.886 kb on + strand, within BACOVA_00588at 24.889 kb on + strand, within BACOVA_00588at 24.889 kb on + strand, within BACOVA_00588at 24.890 kb on - strand, within BACOVA_00588at 24.892 kb on - strand, within BACOVA_00588at 24.900 kb on + strand, within BACOVA_00588at 24.956 kb on - strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.981 kb on - strand, within BACOVA_00588at 24.987 kb on - strand, within BACOVA_00588at 25.022 kb on + strand, within BACOVA_00588at 25.023 kb on - strand, within BACOVA_00588at 25.026 kb on + strand, within BACOVA_00588at 25.026 kb on + strand, within BACOVA_00588at 25.026 kb on + strand, within BACOVA_00588at 25.027 kb on - strand, within BACOVA_00588at 25.041 kb on - strand, within BACOVA_00588at 25.069 kb on + strand, within BACOVA_00588at 25.102 kb on - strand, within BACOVA_00588at 25.106 kb on + strand, within BACOVA_00588at 25.167 kb on + strand, within BACOVA_00588at 25.202 kb on - strand, within BACOVA_00588at 25.205 kb on + strand, within BACOVA_00588at 25.205 kb on + strand, within BACOVA_00588at 25.317 kb on + strand, within BACOVA_00588at 25.341 kb on + strand, within BACOVA_00588at 25.420 kb on + strand, within BACOVA_00588at 25.421 kb on - strand, within BACOVA_00588at 25.444 kb on + strand, within BACOVA_00588at 25.444 kb on + strand, within BACOVA_00588at 25.445 kb on - strand, within BACOVA_00588at 25.445 kb on - strand, within BACOVA_00588at 25.503 kb on - strandat 25.562 kb on + strandat 25.562 kb on + strandat 25.562 kb on + strandat 25.594 kb on + strandat 25.605 kb on - strandat 25.610 kb on + strandat 25.610 kb on + strandat 25.611 kb on - strandat 25.617 kb on + strandat 25.617 kb on + strandat 25.618 kb on - strandat 25.622 kb on - strandat 25.622 kb on - strandat 25.622 kb on - strandat 25.647 kb on - strandat 25.724 kb on + strandat 25.724 kb on + strandat 25.727 kb on - strandat 25.728 kb on + strandat 25.739 kb on + strand, within BACOVA_00589at 25.778 kb on - strand, within BACOVA_00589at 25.791 kb on - strand, within BACOVA_00589at 25.808 kb on + strand, within BACOVA_00589at 25.809 kb on - strand, within BACOVA_00589at 25.809 kb on - strand, within BACOVA_00589at 25.809 kb on - strand, within BACOVA_00589at 25.831 kb on - strand, within BACOVA_00589at 25.896 kb on + strand, within BACOVA_00589at 25.969 kb on - strand, within BACOVA_00589at 25.969 kb on - strand, within BACOVA_00589at 25.969 kb on - strand, within BACOVA_00589at 26.000 kb on - strand, within BACOVA_00589at 26.009 kb on - strand, within BACOVA_00589at 26.073 kb on - strandat 26.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
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24,764 + BACOVA_00588 0.46 -0.6
24,764 + BACOVA_00588 0.46 -1.8
24,886 + BACOVA_00588 0.54 -0.4
24,889 + BACOVA_00588 0.54 +0.4
24,889 + BACOVA_00588 0.54 +0.2
24,890 - BACOVA_00588 0.54 -0.7
24,892 - BACOVA_00588 0.54 -1.6
24,900 + BACOVA_00588 0.55 -0.9
24,956 - BACOVA_00588 0.58 -1.1
24,977 + BACOVA_00588 0.59 -0.2
24,977 + BACOVA_00588 0.59 -1.2
24,977 + BACOVA_00588 0.59 +0.8
24,981 - BACOVA_00588 0.60 +1.0
24,987 - BACOVA_00588 0.60 -0.4
25,022 + BACOVA_00588 0.62 +0.3
25,023 - BACOVA_00588 0.62 +1.4
25,026 + BACOVA_00588 0.62 +0.6
25,026 + BACOVA_00588 0.62 +0.4
25,026 + BACOVA_00588 0.62 +0.5
25,027 - BACOVA_00588 0.62 -1.5
25,041 - BACOVA_00588 0.63 +0.1
25,069 + BACOVA_00588 0.65 +0.2
25,102 - BACOVA_00588 0.67 -1.3
25,106 + BACOVA_00588 0.67 -0.4
25,167 + BACOVA_00588 0.71 -0.3
25,202 - BACOVA_00588 0.73 -0.2
25,205 + BACOVA_00588 0.73 +0.1
25,205 + BACOVA_00588 0.73 -0.7
25,317 + BACOVA_00588 0.80 +0.6
25,341 + BACOVA_00588 0.82 -0.7
25,420 + BACOVA_00588 0.87 -0.3
25,421 - BACOVA_00588 0.87 +1.0
25,444 + BACOVA_00588 0.88 -0.3
25,444 + BACOVA_00588 0.88 +0.3
25,445 - BACOVA_00588 0.88 -0.3
25,445 - BACOVA_00588 0.88 +0.4
25,503 - -0.8
25,562 + -0.7
25,562 + -0.2
25,562 + +1.1
25,594 + -1.0
25,605 - +0.5
25,610 + -1.1
25,610 + -0.7
25,611 - +0.1
25,617 + +1.2
25,617 + -0.4
25,618 - +1.4
25,622 - +1.8
25,622 - -0.3
25,622 - -1.8
25,647 - -2.1
25,724 + +0.3
25,724 + -0.7
25,727 - +0.5
25,728 + +0.5
25,739 + BACOVA_00589 0.11 -1.1
25,778 - BACOVA_00589 0.20 -0.4
25,791 - BACOVA_00589 0.23 -0.1
25,808 + BACOVA_00589 0.27 +0.2
25,809 - BACOVA_00589 0.28 -1.3
25,809 - BACOVA_00589 0.28 -0.8
25,809 - BACOVA_00589 0.28 -0.5
25,831 - BACOVA_00589 0.33 -0.5
25,896 + BACOVA_00589 0.49 -0.4
25,969 - BACOVA_00589 0.67 +0.9
25,969 - BACOVA_00589 0.67 -0.8
25,969 - BACOVA_00589 0.67 -0.5
26,000 - BACOVA_00589 0.75 -0.9
26,009 - BACOVA_00589 0.77 -0.6
26,073 - -1.8
26,075 + -0.2

Or see this region's nucleotide sequence