Experiment: lim MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04428 and OHPLBJKB_04429 are separated by 45 nucleotides OHPLBJKB_04429 and OHPLBJKB_04430 are separated by 13 nucleotides OHPLBJKB_04430 and OHPLBJKB_04431 are separated by 0 nucleotides OHPLBJKB_04431 and OHPLBJKB_04432 are separated by 385 nucleotides OHPLBJKB_04432 and OHPLBJKB_04433 overlap by 19 nucleotides
OHPLBJKB_04428: OHPLBJKB_04428 - hypothetical protein, at 77,766 to 78,542
_04428
OHPLBJKB_04429: OHPLBJKB_04429 - hypothetical protein, at 78,588 to 79,022
_04429
OHPLBJKB_04430: OHPLBJKB_04430 - hypothetical protein, at 79,036 to 79,257
_04430
OHPLBJKB_04431: OHPLBJKB_04431 - DNA adenine methyltransferase YhdJ, at 79,258 to 79,941
_04431
OHPLBJKB_04432: OHPLBJKB_04432 - hypothetical protein, at 80,327 to 80,764
_04432
OHPLBJKB_04433: OHPLBJKB_04433 - hypothetical protein, at 80,746 to 81,252
_04433
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 78.412 kb on + strand, within OHPLBJKB_04428 at 78.412 kb on + strand, within OHPLBJKB_04428 at 78.412 kb on + strand, within OHPLBJKB_04428 at 78.412 kb on + strand, within OHPLBJKB_04428 at 78.413 kb on - strand, within OHPLBJKB_04428 at 78.413 kb on - strand, within OHPLBJKB_04428 at 78.413 kb on - strand, within OHPLBJKB_04428 at 78.903 kb on - strand, within OHPLBJKB_04429 at 78.947 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.965 kb on + strand, within OHPLBJKB_04429 at 78.999 kb on + strand at 79.000 kb on - strand at 79.019 kb on - strand at 79.019 kb on - strand at 79.045 kb on - strand at 79.076 kb on + strand, within OHPLBJKB_04430 at 79.076 kb on + strand, within OHPLBJKB_04430 at 79.076 kb on + strand, within OHPLBJKB_04430 at 79.077 kb on - strand, within OHPLBJKB_04430 at 79.077 kb on - strand, within OHPLBJKB_04430 at 79.077 kb on - strand, within OHPLBJKB_04430 at 79.077 kb on - strand, within OHPLBJKB_04430 at 79.250 kb on + strand at 79.251 kb on - strand at 79.260 kb on - strand at 79.276 kb on - strand at 79.379 kb on + strand, within OHPLBJKB_04431 at 79.380 kb on - strand, within OHPLBJKB_04431 at 79.595 kb on + strand, within OHPLBJKB_04431 at 79.595 kb on + strand, within OHPLBJKB_04431 at 79.595 kb on + strand, within OHPLBJKB_04431 at 79.595 kb on + strand, within OHPLBJKB_04431 at 79.595 kb on + strand, within OHPLBJKB_04431 at 79.596 kb on - strand, within OHPLBJKB_04431 at 79.596 kb on - strand, within OHPLBJKB_04431 at 79.596 kb on - strand, within OHPLBJKB_04431 at 79.596 kb on - strand, within OHPLBJKB_04431 at 79.622 kb on + strand, within OHPLBJKB_04431 at 79.622 kb on + strand, within OHPLBJKB_04431 at 79.622 kb on + strand, within OHPLBJKB_04431 at 79.622 kb on + strand, within OHPLBJKB_04431 at 79.622 kb on + strand, within OHPLBJKB_04431 at 79.622 kb on + strand, within OHPLBJKB_04431 at 79.640 kb on + strand, within OHPLBJKB_04431 at 79.640 kb on + strand, within OHPLBJKB_04431 at 79.640 kb on + strand, within OHPLBJKB_04431 at 79.651 kb on - strand, within OHPLBJKB_04431 at 79.728 kb on - strand, within OHPLBJKB_04431 at 79.767 kb on - strand, within OHPLBJKB_04431 at 79.767 kb on - strand, within OHPLBJKB_04431 at 79.776 kb on + strand, within OHPLBJKB_04431 at 79.822 kb on - strand, within OHPLBJKB_04431 at 79.854 kb on - strand, within OHPLBJKB_04431 at 79.929 kb on + strand at 79.941 kb on + strand at 79.941 kb on + strand at 79.941 kb on + strand at 79.942 kb on - strand at 80.142 kb on + strand at 80.256 kb on - strand at 80.323 kb on + strand at 80.323 kb on + strand at 80.323 kb on + strand at 80.323 kb on + strand at 80.324 kb on - strand at 80.324 kb on - strand at 80.457 kb on + strand, within OHPLBJKB_04432 at 80.458 kb on - strand, within OHPLBJKB_04432 at 80.531 kb on + strand, within OHPLBJKB_04432 at 80.531 kb on + strand, within OHPLBJKB_04432 at 80.532 kb on - strand, within OHPLBJKB_04432 at 80.534 kb on + strand, within OHPLBJKB_04432 at 80.534 kb on + strand, within OHPLBJKB_04432 at 80.625 kb on + strand, within OHPLBJKB_04432 at 80.650 kb on - strand, within OHPLBJKB_04432 at 80.659 kb on + strand, within OHPLBJKB_04432 at 80.812 kb on + strand, within OHPLBJKB_04433 at 80.812 kb on + strand, within OHPLBJKB_04433 at 80.813 kb on - strand, within OHPLBJKB_04433
Per-strain Table
Position Strand Gene LocusTag Fraction lim MOI1 remove 78,412 + OHPLBJKB_04428 0.83 -0.6 78,412 + OHPLBJKB_04428 0.83 +1.5 78,412 + OHPLBJKB_04428 0.83 -0.1 78,412 + OHPLBJKB_04428 0.83 -1.7 78,413 - OHPLBJKB_04428 0.83 -0.9 78,413 - OHPLBJKB_04428 0.83 -0.4 78,413 - OHPLBJKB_04428 0.83 +1.2 78,903 - OHPLBJKB_04429 0.72 -0.5 78,947 + OHPLBJKB_04429 0.83 +0.1 78,965 + OHPLBJKB_04429 0.87 -0.5 78,965 + OHPLBJKB_04429 0.87 -0.5 78,965 + OHPLBJKB_04429 0.87 -1.1 78,965 + OHPLBJKB_04429 0.87 +0.3 78,965 + OHPLBJKB_04429 0.87 -1.4 78,965 + OHPLBJKB_04429 0.87 -0.4 78,965 + OHPLBJKB_04429 0.87 +1.4 78,965 + OHPLBJKB_04429 0.87 -1.1 78,999 + -1.3 79,000 - -0.4 79,019 - -0.5 79,019 - -0.1 79,045 - +1.6 79,076 + OHPLBJKB_04430 0.18 -0.3 79,076 + OHPLBJKB_04430 0.18 -0.2 79,076 + OHPLBJKB_04430 0.18 -1.4 79,077 - OHPLBJKB_04430 0.18 -1.0 79,077 - OHPLBJKB_04430 0.18 -0.6 79,077 - OHPLBJKB_04430 0.18 +0.1 79,077 - OHPLBJKB_04430 0.18 -0.1 79,250 + -1.4 79,251 - +0.6 79,260 - +0.1 79,276 - +0.3 79,379 + OHPLBJKB_04431 0.18 -1.4 79,380 - OHPLBJKB_04431 0.18 -0.5 79,595 + OHPLBJKB_04431 0.49 -0.9 79,595 + OHPLBJKB_04431 0.49 -0.4 79,595 + OHPLBJKB_04431 0.49 -1.2 79,595 + OHPLBJKB_04431 0.49 -1.4 79,595 + OHPLBJKB_04431 0.49 -0.7 79,596 - OHPLBJKB_04431 0.49 +0.9 79,596 - OHPLBJKB_04431 0.49 +0.7 79,596 - OHPLBJKB_04431 0.49 -1.2 79,596 - OHPLBJKB_04431 0.49 -0.3 79,622 + OHPLBJKB_04431 0.53 -0.1 79,622 + OHPLBJKB_04431 0.53 -0.7 79,622 + OHPLBJKB_04431 0.53 -1.9 79,622 + OHPLBJKB_04431 0.53 +0.2 79,622 + OHPLBJKB_04431 0.53 -1.1 79,622 + OHPLBJKB_04431 0.53 +1.3 79,640 + OHPLBJKB_04431 0.56 -0.1 79,640 + OHPLBJKB_04431 0.56 +0.5 79,640 + OHPLBJKB_04431 0.56 -0.7 79,651 - OHPLBJKB_04431 0.57 -1.9 79,728 - OHPLBJKB_04431 0.69 +0.4 79,767 - OHPLBJKB_04431 0.74 -0.4 79,767 - OHPLBJKB_04431 0.74 +1.4 79,776 + OHPLBJKB_04431 0.76 +0.0 79,822 - OHPLBJKB_04431 0.82 +0.4 79,854 - OHPLBJKB_04431 0.87 +0.3 79,929 + -0.4 79,941 + +0.4 79,941 + +1.1 79,941 + -0.1 79,942 - -1.1 80,142 + -1.4 80,256 - -1.3 80,323 + -0.4 80,323 + +0.3 80,323 + -0.8 80,323 + +0.9 80,324 - +0.6 80,324 - +0.9 80,457 + OHPLBJKB_04432 0.30 +0.1 80,458 - OHPLBJKB_04432 0.30 -0.1 80,531 + OHPLBJKB_04432 0.47 -0.7 80,531 + OHPLBJKB_04432 0.47 -0.1 80,532 - OHPLBJKB_04432 0.47 -1.1 80,534 + OHPLBJKB_04432 0.47 -1.1 80,534 + OHPLBJKB_04432 0.47 +0.3 80,625 + OHPLBJKB_04432 0.68 +1.2 80,650 - OHPLBJKB_04432 0.74 +0.2 80,659 + OHPLBJKB_04432 0.76 +0.3 80,812 + OHPLBJKB_04433 0.13 +1.2 80,812 + OHPLBJKB_04433 0.13 +0.6 80,813 - OHPLBJKB_04433 0.13 -0.3
Or see this region's nucleotide sequence