Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02533

Experiment: lim MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02532 and OHPLBJKB_02533 are separated by 171 nucleotidesOHPLBJKB_02533 and OHPLBJKB_02534 are separated by 9 nucleotidesOHPLBJKB_02534 and OHPLBJKB_02535 are separated by 53 nucleotides OHPLBJKB_02532: OHPLBJKB_02532 - Isocitrate dehydrogenase [NADP], at 2,643,852 to 2,645,102 _02532 OHPLBJKB_02533: OHPLBJKB_02533 - Ribosomal large subunit pseudouridine synthase E, at 2,645,274 to 2,645,927 _02533 OHPLBJKB_02534: OHPLBJKB_02534 - Phosphatase NudJ, at 2,645,937 to 2,646,398 _02534 OHPLBJKB_02535: OHPLBJKB_02535 - tRNA-specific 2-thiouridylase MnmA, at 2,646,452 to 2,647,558 _02535 Position (kb) 2645 2646Strain fitness (log2 ratio) -2 -1 0 1at 2645.270 kb on + strandat 2645.270 kb on + strandat 2645.270 kb on + strandat 2645.270 kb on + strandat 2645.271 kb on - strandat 2645.271 kb on - strandat 2645.271 kb on - strandat 2645.272 kb on + strandat 2645.273 kb on - strandat 2645.361 kb on - strand, within OHPLBJKB_02533at 2645.416 kb on - strand, within OHPLBJKB_02533at 2645.491 kb on - strand, within OHPLBJKB_02533at 2645.601 kb on + strand, within OHPLBJKB_02533at 2645.602 kb on - strand, within OHPLBJKB_02533at 2645.602 kb on - strand, within OHPLBJKB_02533at 2645.665 kb on + strand, within OHPLBJKB_02533at 2645.665 kb on + strand, within OHPLBJKB_02533at 2645.788 kb on + strand, within OHPLBJKB_02533at 2645.788 kb on + strand, within OHPLBJKB_02533at 2645.788 kb on + strand, within OHPLBJKB_02533at 2645.788 kb on + strand, within OHPLBJKB_02533at 2645.788 kb on + strand, within OHPLBJKB_02533at 2645.789 kb on - strand, within OHPLBJKB_02533at 2645.789 kb on - strand, within OHPLBJKB_02533at 2645.789 kb on - strand, within OHPLBJKB_02533at 2645.789 kb on - strand, within OHPLBJKB_02533at 2645.790 kb on + strand, within OHPLBJKB_02533at 2645.790 kb on + strand, within OHPLBJKB_02533at 2645.790 kb on + strand, within OHPLBJKB_02533at 2645.790 kb on + strand, within OHPLBJKB_02533at 2645.791 kb on - strand, within OHPLBJKB_02533at 2645.801 kb on + strand, within OHPLBJKB_02533at 2645.801 kb on + strand, within OHPLBJKB_02533at 2645.802 kb on - strand, within OHPLBJKB_02533at 2645.877 kb on + strandat 2645.942 kb on + strandat 2645.943 kb on - strandat 2646.137 kb on + strand, within OHPLBJKB_02534at 2646.315 kb on - strand, within OHPLBJKB_02534at 2646.369 kb on - strandat 2646.396 kb on + strandat 2646.396 kb on + strandat 2646.396 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lim MOI1
remove
2,645,270 + -1.6
2,645,270 + +0.0
2,645,270 + +0.3
2,645,270 + -0.9
2,645,271 - +0.3
2,645,271 - +0.2
2,645,271 - -0.5
2,645,272 + -1.4
2,645,273 - -1.1
2,645,361 - OHPLBJKB_02533 0.13 -0.9
2,645,416 - OHPLBJKB_02533 0.22 -1.2
2,645,491 - OHPLBJKB_02533 0.33 -0.0
2,645,601 + OHPLBJKB_02533 0.50 -1.0
2,645,602 - OHPLBJKB_02533 0.50 +0.3
2,645,602 - OHPLBJKB_02533 0.50 -0.8
2,645,665 + OHPLBJKB_02533 0.60 -0.1
2,645,665 + OHPLBJKB_02533 0.60 -1.9
2,645,788 + OHPLBJKB_02533 0.79 +0.6
2,645,788 + OHPLBJKB_02533 0.79 +0.7
2,645,788 + OHPLBJKB_02533 0.79 +0.9
2,645,788 + OHPLBJKB_02533 0.79 -0.5
2,645,788 + OHPLBJKB_02533 0.79 +0.6
2,645,789 - OHPLBJKB_02533 0.79 -0.6
2,645,789 - OHPLBJKB_02533 0.79 +0.3
2,645,789 - OHPLBJKB_02533 0.79 +1.2
2,645,789 - OHPLBJKB_02533 0.79 -0.5
2,645,790 + OHPLBJKB_02533 0.79 -0.1
2,645,790 + OHPLBJKB_02533 0.79 +0.7
2,645,790 + OHPLBJKB_02533 0.79 +0.5
2,645,790 + OHPLBJKB_02533 0.79 +0.0
2,645,791 - OHPLBJKB_02533 0.79 -1.3
2,645,801 + OHPLBJKB_02533 0.81 +1.3
2,645,801 + OHPLBJKB_02533 0.81 +0.7
2,645,802 - OHPLBJKB_02533 0.81 +0.4
2,645,877 + -0.1
2,645,942 + -0.6
2,645,943 - -0.2
2,646,137 + OHPLBJKB_02534 0.43 +0.4
2,646,315 - OHPLBJKB_02534 0.82 +1.4
2,646,369 - -0.2
2,646,396 + +0.7
2,646,396 + -0.2
2,646,396 + -1.0

Or see this region's nucleotide sequence