Experiment: lim MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00676 and OHPLBJKB_00677 overlap by 4 nucleotides OHPLBJKB_00677 and OHPLBJKB_00678 are separated by 151 nucleotides OHPLBJKB_00678 and OHPLBJKB_00679 are separated by 52 nucleotides OHPLBJKB_00679 and OHPLBJKB_00680 are separated by 204 nucleotides
OHPLBJKB_00676: OHPLBJKB_00676 - Sensor protein QseC, at 694,237 to 695,586
_00676
OHPLBJKB_00677: OHPLBJKB_00677 - Transcriptional regulatory protein QseB, at 695,583 to 696,242
_00677
OHPLBJKB_00678: OHPLBJKB_00678 - Protein YgiW, at 696,394 to 696,786
_00678
OHPLBJKB_00679: OHPLBJKB_00679 - DNA gyrase inhibitor, at 696,839 to 697,321
_00679
OHPLBJKB_00680: OHPLBJKB_00680 - mRNA interferase toxin MqsR, at 697,526 to 697,822
_00680
Position (kb) 696
697 Strain fitness (log2 ratio) -2
-1
0
1 at 695.419 kb on - strand, within OHPLBJKB_00676 at 695.595 kb on + strand at 695.595 kb on + strand at 695.595 kb on + strand at 695.595 kb on + strand at 695.596 kb on - strand at 695.596 kb on - strand at 695.596 kb on - strand at 695.596 kb on - strand at 695.603 kb on - strand at 695.681 kb on + strand, within OHPLBJKB_00677 at 695.705 kb on + strand, within OHPLBJKB_00677 at 695.706 kb on - strand, within OHPLBJKB_00677 at 695.707 kb on + strand, within OHPLBJKB_00677 at 695.708 kb on - strand, within OHPLBJKB_00677 at 695.708 kb on - strand, within OHPLBJKB_00677 at 695.708 kb on - strand, within OHPLBJKB_00677 at 695.708 kb on - strand, within OHPLBJKB_00677 at 695.799 kb on + strand, within OHPLBJKB_00677 at 695.925 kb on + strand, within OHPLBJKB_00677 at 695.926 kb on - strand, within OHPLBJKB_00677 at 695.943 kb on - strand, within OHPLBJKB_00677 at 695.979 kb on + strand, within OHPLBJKB_00677 at 695.979 kb on + strand, within OHPLBJKB_00677 at 695.980 kb on - strand, within OHPLBJKB_00677 at 695.980 kb on - strand, within OHPLBJKB_00677 at 696.109 kb on + strand, within OHPLBJKB_00677 at 696.110 kb on - strand, within OHPLBJKB_00677 at 696.110 kb on - strand, within OHPLBJKB_00677 at 696.110 kb on - strand, within OHPLBJKB_00677 at 696.110 kb on - strand, within OHPLBJKB_00677 at 696.120 kb on - strand, within OHPLBJKB_00677 at 696.120 kb on - strand, within OHPLBJKB_00677 at 696.121 kb on + strand, within OHPLBJKB_00677 at 696.121 kb on + strand, within OHPLBJKB_00677 at 696.121 kb on + strand, within OHPLBJKB_00677 at 696.122 kb on - strand, within OHPLBJKB_00677 at 696.122 kb on - strand, within OHPLBJKB_00677 at 696.179 kb on + strand at 696.180 kb on - strand at 696.180 kb on - strand at 696.180 kb on - strand at 696.180 kb on - strand at 696.266 kb on - strand at 696.278 kb on + strand at 696.291 kb on - strand at 696.291 kb on - strand at 696.303 kb on - strand at 696.348 kb on + strand at 696.348 kb on + strand at 696.349 kb on - strand at 696.377 kb on + strand at 696.377 kb on + strand at 696.377 kb on + strand at 696.389 kb on + strand at 696.390 kb on - strand at 696.390 kb on - strand at 696.390 kb on - strand at 696.390 kb on - strand at 696.390 kb on - strand at 696.539 kb on + strand, within OHPLBJKB_00678 at 696.539 kb on + strand, within OHPLBJKB_00678 at 696.540 kb on - strand, within OHPLBJKB_00678 at 696.540 kb on - strand, within OHPLBJKB_00678 at 696.540 kb on - strand, within OHPLBJKB_00678 at 696.619 kb on + strand, within OHPLBJKB_00678 at 696.619 kb on + strand, within OHPLBJKB_00678 at 696.620 kb on - strand, within OHPLBJKB_00678 at 696.620 kb on - strand, within OHPLBJKB_00678 at 696.620 kb on - strand, within OHPLBJKB_00678 at 696.620 kb on - strand, within OHPLBJKB_00678 at 696.620 kb on - strand, within OHPLBJKB_00678 at 696.645 kb on + strand, within OHPLBJKB_00678 at 696.645 kb on + strand, within OHPLBJKB_00678 at 696.776 kb on + strand at 696.791 kb on + strand at 696.861 kb on + strand at 696.861 kb on + strand at 696.861 kb on + strand at 696.861 kb on + strand at 696.862 kb on - strand at 696.862 kb on - strand at 696.862 kb on - strand at 696.886 kb on - strand at 696.932 kb on + strand, within OHPLBJKB_00679 at 696.932 kb on + strand, within OHPLBJKB_00679 at 696.932 kb on + strand, within OHPLBJKB_00679 at 696.932 kb on + strand, within OHPLBJKB_00679 at 696.932 kb on + strand, within OHPLBJKB_00679 at 696.933 kb on - strand, within OHPLBJKB_00679 at 696.933 kb on - strand, within OHPLBJKB_00679 at 696.933 kb on - strand, within OHPLBJKB_00679 at 697.133 kb on + strand, within OHPLBJKB_00679 at 697.168 kb on + strand, within OHPLBJKB_00679 at 697.231 kb on + strand, within OHPLBJKB_00679 at 697.231 kb on + strand, within OHPLBJKB_00679 at 697.253 kb on + strand, within OHPLBJKB_00679 at 697.254 kb on - strand, within OHPLBJKB_00679 at 697.304 kb on + strand at 697.304 kb on + strand at 697.304 kb on + strand at 697.304 kb on + strand at 697.304 kb on + strand at 697.304 kb on + strand at 697.305 kb on - strand at 697.305 kb on - strand at 697.305 kb on - strand at 697.305 kb on - strand at 697.305 kb on - strand at 697.342 kb on + strand at 697.344 kb on + strand at 697.345 kb on - strand at 697.371 kb on + strand at 697.371 kb on + strand at 697.372 kb on - strand at 697.387 kb on + strand at 697.387 kb on + strand at 697.387 kb on + strand at 697.387 kb on + strand at 697.387 kb on + strand at 697.387 kb on + strand at 697.387 kb on + strand at 697.388 kb on - strand at 697.389 kb on + strand at 697.389 kb on + strand at 697.389 kb on + strand at 697.389 kb on + strand at 697.389 kb on + strand at 697.389 kb on + strand at 697.390 kb on - strand at 697.390 kb on - strand at 697.390 kb on - strand at 697.415 kb on + strand at 697.415 kb on + strand at 697.441 kb on + strand at 697.447 kb on + strand at 697.447 kb on + strand at 697.448 kb on - strand at 697.479 kb on + strand at 697.546 kb on + strand at 697.546 kb on + strand at 697.546 kb on + strand at 697.546 kb on + strand at 697.546 kb on + strand at 697.546 kb on + strand at 697.546 kb on + strand at 697.546 kb on + strand at 697.547 kb on - strand at 697.547 kb on - strand at 697.547 kb on - strand at 697.547 kb on - strand at 697.547 kb on - strand at 697.547 kb on - strand at 697.594 kb on + strand, within OHPLBJKB_00680 at 697.594 kb on + strand, within OHPLBJKB_00680 at 697.595 kb on - strand, within OHPLBJKB_00680 at 697.603 kb on + strand, within OHPLBJKB_00680 at 697.603 kb on + strand, within OHPLBJKB_00680 at 697.603 kb on + strand, within OHPLBJKB_00680 at 697.604 kb on - strand, within OHPLBJKB_00680 at 697.615 kb on - strand, within OHPLBJKB_00680 at 697.629 kb on + strand, within OHPLBJKB_00680 at 697.648 kb on + strand, within OHPLBJKB_00680 at 697.648 kb on + strand, within OHPLBJKB_00680 at 697.648 kb on + strand, within OHPLBJKB_00680 at 697.648 kb on + strand, within OHPLBJKB_00680 at 697.649 kb on - strand, within OHPLBJKB_00680 at 697.649 kb on - strand, within OHPLBJKB_00680 at 697.654 kb on + strand, within OHPLBJKB_00680 at 697.688 kb on + strand, within OHPLBJKB_00680 at 697.690 kb on + strand, within OHPLBJKB_00680 at 697.691 kb on - strand, within OHPLBJKB_00680 at 697.706 kb on + strand, within OHPLBJKB_00680 at 697.706 kb on + strand, within OHPLBJKB_00680 at 697.717 kb on + strand, within OHPLBJKB_00680 at 697.717 kb on + strand, within OHPLBJKB_00680 at 697.718 kb on - strand, within OHPLBJKB_00680 at 697.720 kb on + strand, within OHPLBJKB_00680 at 697.721 kb on - strand, within OHPLBJKB_00680 at 697.721 kb on - strand, within OHPLBJKB_00680 at 697.753 kb on + strand, within OHPLBJKB_00680
Per-strain Table
Position Strand Gene LocusTag Fraction lim MOI1 remove 695,419 - OHPLBJKB_00676 0.88 -0.5 695,595 + +0.2 695,595 + -1.0 695,595 + +0.1 695,595 + -1.1 695,596 - +0.2 695,596 - -0.9 695,596 - +0.3 695,596 - -0.3 695,603 - -0.8 695,681 + OHPLBJKB_00677 0.15 -0.7 695,705 + OHPLBJKB_00677 0.18 +0.7 695,706 - OHPLBJKB_00677 0.19 +0.6 695,707 + OHPLBJKB_00677 0.19 -0.1 695,708 - OHPLBJKB_00677 0.19 -0.4 695,708 - OHPLBJKB_00677 0.19 -0.7 695,708 - OHPLBJKB_00677 0.19 +0.3 695,708 - OHPLBJKB_00677 0.19 -0.4 695,799 + OHPLBJKB_00677 0.33 +0.5 695,925 + OHPLBJKB_00677 0.52 +0.4 695,926 - OHPLBJKB_00677 0.52 +0.4 695,943 - OHPLBJKB_00677 0.55 +0.3 695,979 + OHPLBJKB_00677 0.60 +0.3 695,979 + OHPLBJKB_00677 0.60 +0.1 695,980 - OHPLBJKB_00677 0.60 +1.2 695,980 - OHPLBJKB_00677 0.60 +0.0 696,109 + OHPLBJKB_00677 0.80 -0.3 696,110 - OHPLBJKB_00677 0.80 -0.6 696,110 - OHPLBJKB_00677 0.80 -0.1 696,110 - OHPLBJKB_00677 0.80 +0.3 696,110 - OHPLBJKB_00677 0.80 +0.8 696,120 - OHPLBJKB_00677 0.81 +0.0 696,120 - OHPLBJKB_00677 0.81 +0.2 696,121 + OHPLBJKB_00677 0.82 -1.1 696,121 + OHPLBJKB_00677 0.82 -1.1 696,121 + OHPLBJKB_00677 0.82 -0.6 696,122 - OHPLBJKB_00677 0.82 -0.1 696,122 - OHPLBJKB_00677 0.82 -0.6 696,179 + -0.6 696,180 - +0.5 696,180 - +0.6 696,180 - -2.1 696,180 - +0.3 696,266 - +0.6 696,278 + -1.6 696,291 - +0.7 696,291 - -0.9 696,303 - +0.3 696,348 + -1.1 696,348 + -0.2 696,349 - -0.3 696,377 + -0.6 696,377 + -0.6 696,377 + +0.0 696,389 + +0.2 696,390 - -0.1 696,390 - +0.3 696,390 - +0.5 696,390 - +0.0 696,390 - -1.0 696,539 + OHPLBJKB_00678 0.37 -0.0 696,539 + OHPLBJKB_00678 0.37 -1.2 696,540 - OHPLBJKB_00678 0.37 +0.2 696,540 - OHPLBJKB_00678 0.37 -0.8 696,540 - OHPLBJKB_00678 0.37 +0.5 696,619 + OHPLBJKB_00678 0.57 -0.6 696,619 + OHPLBJKB_00678 0.57 -0.1 696,620 - OHPLBJKB_00678 0.58 -0.2 696,620 - OHPLBJKB_00678 0.58 +0.1 696,620 - OHPLBJKB_00678 0.58 -0.2 696,620 - OHPLBJKB_00678 0.58 -0.2 696,620 - OHPLBJKB_00678 0.58 -1.1 696,645 + OHPLBJKB_00678 0.64 -1.0 696,645 + OHPLBJKB_00678 0.64 -0.2 696,776 + -0.3 696,791 + +0.4 696,861 + +0.3 696,861 + -1.7 696,861 + -0.6 696,861 + +0.6 696,862 - +0.8 696,862 - -0.6 696,862 - +1.6 696,886 - -0.1 696,932 + OHPLBJKB_00679 0.19 -0.3 696,932 + OHPLBJKB_00679 0.19 -0.1 696,932 + OHPLBJKB_00679 0.19 -1.7 696,932 + OHPLBJKB_00679 0.19 +0.0 696,932 + OHPLBJKB_00679 0.19 +0.9 696,933 - OHPLBJKB_00679 0.19 +0.3 696,933 - OHPLBJKB_00679 0.19 +0.3 696,933 - OHPLBJKB_00679 0.19 +0.2 697,133 + OHPLBJKB_00679 0.61 +0.6 697,168 + OHPLBJKB_00679 0.68 -0.9 697,231 + OHPLBJKB_00679 0.81 -0.2 697,231 + OHPLBJKB_00679 0.81 -0.0 697,253 + OHPLBJKB_00679 0.86 +0.1 697,254 - OHPLBJKB_00679 0.86 -0.1 697,304 + +0.7 697,304 + +0.0 697,304 + -0.5 697,304 + -1.6 697,304 + +0.6 697,304 + -0.3 697,305 - +0.2 697,305 - +1.5 697,305 - -0.1 697,305 - -0.6 697,305 - -0.2 697,342 + -0.6 697,344 + +0.4 697,345 - -1.1 697,371 + -1.4 697,371 + +0.2 697,372 - -0.4 697,387 + -0.8 697,387 + -0.3 697,387 + -0.5 697,387 + -0.4 697,387 + +0.4 697,387 + -0.4 697,387 + -1.1 697,388 - +0.5 697,389 + -0.4 697,389 + -0.6 697,389 + -0.5 697,389 + -0.7 697,389 + -0.5 697,389 + +0.2 697,390 - -0.5 697,390 - -0.4 697,390 - -0.4 697,415 + +0.4 697,415 + -0.8 697,441 + -1.4 697,447 + +0.9 697,447 + +1.2 697,448 - -0.6 697,479 + -0.9 697,546 + +0.7 697,546 + +0.3 697,546 + -0.3 697,546 + +0.3 697,546 + -0.1 697,546 + -0.2 697,546 + -2.1 697,546 + -0.1 697,547 - -0.2 697,547 - +0.2 697,547 - +0.4 697,547 - +0.7 697,547 - -0.3 697,547 - -0.9 697,594 + OHPLBJKB_00680 0.23 +0.3 697,594 + OHPLBJKB_00680 0.23 +0.1 697,595 - OHPLBJKB_00680 0.23 +0.4 697,603 + OHPLBJKB_00680 0.26 -0.2 697,603 + OHPLBJKB_00680 0.26 +0.4 697,603 + OHPLBJKB_00680 0.26 +1.4 697,604 - OHPLBJKB_00680 0.26 -0.0 697,615 - OHPLBJKB_00680 0.30 +0.6 697,629 + OHPLBJKB_00680 0.35 -0.8 697,648 + OHPLBJKB_00680 0.41 -0.6 697,648 + OHPLBJKB_00680 0.41 -1.1 697,648 + OHPLBJKB_00680 0.41 +0.2 697,648 + OHPLBJKB_00680 0.41 -1.0 697,649 - OHPLBJKB_00680 0.41 +0.6 697,649 - OHPLBJKB_00680 0.41 +0.6 697,654 + OHPLBJKB_00680 0.43 +1.2 697,688 + OHPLBJKB_00680 0.55 -0.7 697,690 + OHPLBJKB_00680 0.55 -0.2 697,691 - OHPLBJKB_00680 0.56 -0.0 697,706 + OHPLBJKB_00680 0.61 +0.2 697,706 + OHPLBJKB_00680 0.61 +0.6 697,717 + OHPLBJKB_00680 0.64 -1.5 697,717 + OHPLBJKB_00680 0.64 -0.6 697,718 - OHPLBJKB_00680 0.65 -0.8 697,720 + OHPLBJKB_00680 0.65 -0.2 697,721 - OHPLBJKB_00680 0.66 +0.4 697,721 - OHPLBJKB_00680 0.66 +0.3 697,753 + OHPLBJKB_00680 0.76 +0.6
Or see this region's nucleotide sequence