Strain Fitness in Escherichia fergusonii Becca around EFB2_04809

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
5,059,860	+		EFB2_04808	0.61	+0.7
5,059,860	+		EFB2_04808	0.61	-1.0
5,059,860	+		EFB2_04808	0.61	-1.0
5,059,860	+		EFB2_04808	0.61	-2.1
5,059,860	+		EFB2_04808	0.61	+0.1
5,059,860	+		EFB2_04808	0.61	+0.5
5,059,861	-		EFB2_04808	0.62	-0.3
5,059,861	-		EFB2_04808	0.62	-2.4
5,059,923	+		EFB2_04808	0.64	-0.9
5,059,923	+		EFB2_04808	0.64	+0.1
5,059,924	-		EFB2_04808	0.64	-0.3
5,059,924	-		EFB2_04808	0.64	+0.7
5,059,924	-		EFB2_04808	0.64	-1.1
5,059,924	-		EFB2_04808	0.64	+2.4
5,059,930	+		EFB2_04808	0.65	+0.5
5,059,930	+		EFB2_04808	0.65	-0.0
5,059,930	+		EFB2_04808	0.65	+0.2
5,059,930	+		EFB2_04808	0.65	+0.9
5,059,930	+		EFB2_04808	0.65	-2.2
5,059,930	+		EFB2_04808	0.65	+0.1
5,059,930	+		EFB2_04808	0.65	-0.0
5,059,930	+		EFB2_04808	0.65	-0.2
5,059,930	+		EFB2_04808	0.65	-0.2
5,059,930	+		EFB2_04808	0.65	+0.0
5,059,930	+		EFB2_04808	0.65	+0.8
5,059,930	+		EFB2_04808	0.65	+1.2
5,059,930	+		EFB2_04808	0.65	+1.0
5,059,930	+		EFB2_04808	0.65	-3.5
5,059,930	+		EFB2_04808	0.65	-0.5
5,059,930	+		EFB2_04808	0.65	+0.8
5,059,930	+		EFB2_04808	0.65	+0.5
5,059,930	+		EFB2_04808	0.65	-0.8
5,059,931	-		EFB2_04808	0.65	+0.0
5,059,931	-		EFB2_04808	0.65	-0.8
5,059,931	-		EFB2_04808	0.65	-2.8
5,059,931	-		EFB2_04808	0.65	-2.5
5,059,931	-		EFB2_04808	0.65	-1.4
5,059,931	-		EFB2_04808	0.65	-0.2
5,059,931	-		EFB2_04808	0.65	+0.7
5,059,931	-		EFB2_04808	0.65	-2.1
5,059,931	-		EFB2_04808	0.65	+1.2
5,059,931	-		EFB2_04808	0.65	+0.2
5,059,931	-		EFB2_04808	0.65	+0.5
5,059,931	-		EFB2_04808	0.65	+0.9
5,059,931	-		EFB2_04808	0.65	+0.1
5,059,931	-		EFB2_04808	0.65	-1.3
5,059,931	-		EFB2_04808	0.65	+0.6
5,059,931	-		EFB2_04808	0.65	+0.5
5,059,931	-		EFB2_04808	0.65	+1.5
5,059,990	+		EFB2_04808	0.67	-1.3
5,060,003	+		EFB2_04808	0.68	+0.7
5,060,003	+		EFB2_04808	0.68	+0.7
5,060,003	+		EFB2_04808	0.68	-0.6
5,060,003	+		EFB2_04808	0.68	+0.5
5,060,003	+		EFB2_04808	0.68	-0.5
5,060,003	+		EFB2_04808	0.68	-0.1
5,060,004	-		EFB2_04808	0.68	-2.3
5,060,004	-		EFB2_04808	0.68	-2.1
5,060,004	-		EFB2_04808	0.68	-2.2
5,060,004	-		EFB2_04808	0.68	+1.0
5,060,004	-		EFB2_04808	0.68	-1.1
5,060,004	-		EFB2_04808	0.68	-0.7
5,060,004	-		EFB2_04808	0.68	-0.7
5,060,004	-		EFB2_04808	0.68	-0.8
5,060,007	+		EFB2_04808	0.68	-0.8
5,060,007	+		EFB2_04808	0.68	-0.2
5,060,007	+		EFB2_04808	0.68	-3.1
5,060,008	-		EFB2_04808	0.68	-1.0
5,060,008	-		EFB2_04808	0.68	-2.8
5,060,045	+		EFB2_04808	0.70	+0.9
5,060,045	+		EFB2_04808	0.70	-1.3
5,060,046	-		EFB2_04808	0.70	-1.9
5,060,046	-		EFB2_04808	0.70	+0.7
5,060,046	-		EFB2_04808	0.70	-1.0
5,060,046	-		EFB2_04808	0.70	-1.5
5,060,057	+		EFB2_04808	0.70	+0.7
5,060,057	+		EFB2_04808	0.70	-1.3
5,060,058	-		EFB2_04808	0.70	-0.4
5,060,058	-		EFB2_04808	0.70	-0.3
5,060,160	-		EFB2_04808	0.75	+0.2
5,060,160	-		EFB2_04808	0.75	-0.1
5,060,231	+		EFB2_04808	0.78	+0.3
5,060,231	+		EFB2_04808	0.78	+0.8
5,060,231	+		EFB2_04808	0.78	+0.0
5,060,231	+		EFB2_04808	0.78	+0.2
5,060,231	+		EFB2_04808	0.78	-1.1
5,060,231	+		EFB2_04808	0.78	-0.5
5,060,231	+		EFB2_04808	0.78	-0.5
5,060,231	+		EFB2_04808	0.78	-0.2
5,060,232	-		EFB2_04808	0.78	+1.0
5,060,232	-		EFB2_04808	0.78	+0.6
5,060,232	-		EFB2_04808	0.78	-2.6
5,060,232	-		EFB2_04808	0.78	+1.1
5,060,232	-		EFB2_04808	0.78	-1.8
5,060,232	-		EFB2_04808	0.78	-2.3
5,060,232	-		EFB2_04808	0.78	+0.0
5,060,232	-		EFB2_04808	0.78	-2.7
5,060,232	-		EFB2_04808	0.78	+0.5
5,060,235	+		EFB2_04808	0.78	-1.3
5,060,357	+		EFB2_04808	0.83	+1.0
5,060,357	+		EFB2_04808	0.83	+1.0
5,060,357	+		EFB2_04808	0.83	-0.3
5,060,357	+		EFB2_04808	0.83	-0.3
5,060,357	+		EFB2_04808	0.83	-3.1
5,060,357	+		EFB2_04808	0.83	-0.6
5,060,357	+		EFB2_04808	0.83	-0.4
5,060,357	+		EFB2_04808	0.83	+0.5
5,060,357	+		EFB2_04808	0.83	-0.4
5,060,357	+		EFB2_04808	0.83	-0.5
5,060,357	+		EFB2_04808	0.83	+0.3
5,060,357	+		EFB2_04808	0.83	-0.1
5,060,357	+		EFB2_04808	0.83	+0.7
5,060,357	+		EFB2_04808	0.83	-0.4
5,060,357	+		EFB2_04808	0.83	+0.6
5,060,357	+		EFB2_04808	0.83	-0.3
5,060,357	+		EFB2_04808	0.83	+0.9
5,060,357	+		EFB2_04808	0.83	-1.6
5,060,357	+		EFB2_04808	0.83	+0.9
5,060,357	+		EFB2_04808	0.83	-0.9
5,060,357	+		EFB2_04808	0.83	-0.4
5,060,357	+		EFB2_04808	0.83	-2.3
5,060,357	+		EFB2_04808	0.83	-0.6
5,060,357	+		EFB2_04808	0.83	-0.7
5,060,357	+		EFB2_04808	0.83	-0.1
5,060,357	+		EFB2_04808	0.83	-0.6
5,060,357	+		EFB2_04808	0.83	+0.2
5,060,357	+		EFB2_04808	0.83	+1.5
5,060,357	+		EFB2_04808	0.83	-0.0
5,060,357	+		EFB2_04808	0.83	+2.3
5,060,357	+		EFB2_04808	0.83	-0.6
5,060,357	+		EFB2_04808	0.83	+1.7
5,060,357	+		EFB2_04808	0.83	-0.3
5,060,357	+		EFB2_04808	0.83	+1.7
5,060,357	+		EFB2_04808	0.83	-3.0
5,060,357	+		EFB2_04808	0.83	+2.0
5,060,357	+		EFB2_04808	0.83	-2.1
5,060,357	+		EFB2_04808	0.83	+1.8
5,060,357	+		EFB2_04808	0.83	+0.5
5,060,357	+		EFB2_04808	0.83	+1.8
5,060,358	-		EFB2_04808	0.84	-0.5
5,060,358	-		EFB2_04808	0.84	+0.5
5,060,358	-		EFB2_04808	0.84	+0.5
5,060,358	-		EFB2_04808	0.84	-1.3
5,060,358	-		EFB2_04808	0.84	+2.1
5,060,358	-		EFB2_04808	0.84	-1.5
5,060,358	-		EFB2_04808	0.84	+0.9
5,060,358	-		EFB2_04808	0.84	-1.3
5,060,358	-		EFB2_04808	0.84	-0.6
5,060,358	-		EFB2_04808	0.84	-0.7
5,060,358	-		EFB2_04808	0.84	+1.4
5,060,358	-		EFB2_04808	0.84	+1.8
5,060,358	-		EFB2_04808	0.84	-1.0
5,060,358	-		EFB2_04808	0.84	+0.6
5,060,358	-		EFB2_04808	0.84	-0.1
5,060,358	-		EFB2_04808	0.84	-0.4
5,060,358	-		EFB2_04808	0.84	-3.2
5,060,358	-		EFB2_04808	0.84	-0.9
5,060,358	-		EFB2_04808	0.84	+0.2
5,060,358	-		EFB2_04808	0.84	+0.2
5,060,358	-		EFB2_04808	0.84	+0.6
5,060,358	-		EFB2_04808	0.84	+1.5
5,060,358	-		EFB2_04808	0.84	-1.1
5,060,358	-		EFB2_04808	0.84	-1.4
5,060,358	-		EFB2_04808	0.84	+0.6
5,060,358	-		EFB2_04808	0.84	-0.7
5,060,358	-		EFB2_04808	0.84	-1.5
5,060,358	-		EFB2_04808	0.84	-0.2
5,060,358	-		EFB2_04808	0.84	+1.6
5,060,358	-		EFB2_04808	0.84	+0.1
5,060,358	-		EFB2_04808	0.84	+1.5
5,060,358	-		EFB2_04808	0.84	-0.4
5,060,358	-		EFB2_04808	0.84	-2.5
5,060,358	-		EFB2_04808	0.84	+0.7
5,060,358	-		EFB2_04808	0.84	-3.0
5,060,358	-		EFB2_04808	0.84	+0.3
5,060,358	-		EFB2_04808	0.84	+1.1
5,060,358	-		EFB2_04808	0.84	-3.6
5,060,358	-		EFB2_04808	0.84	+2.1
5,060,358	-		EFB2_04808	0.84	+0.2
5,060,358	-		EFB2_04808	0.84	+0.5
5,060,358	-		EFB2_04808	0.84	+1.0
5,060,358	-		EFB2_04808	0.84	+0.9
5,060,363	+		EFB2_04808	0.84	-1.8
5,060,363	+		EFB2_04808	0.84	+0.1
5,060,363	+		EFB2_04808	0.84	+0.0
5,060,363	+		EFB2_04808	0.84	-0.8
5,060,363	+		EFB2_04808	0.84	+0.4
5,060,363	+		EFB2_04808	0.84	+1.6
5,060,363	+		EFB2_04808	0.84	+0.2
5,060,363	+		EFB2_04808	0.84	-0.7
5,060,363	+		EFB2_04808	0.84	+0.5
5,060,363	+		EFB2_04808	0.84	-2.3
5,060,363	+		EFB2_04808	0.84	-0.1
5,060,363	+		EFB2_04808	0.84	+0.3
5,060,363	+		EFB2_04808	0.84	+0.1
5,060,363	+		EFB2_04808	0.84	-0.9
5,060,364	-		EFB2_04808	0.84	-3.5
5,060,364	-		EFB2_04808	0.84	-2.4
5,060,364	-		EFB2_04808	0.84	-0.5
5,060,364	-		EFB2_04808	0.84	+0.0
5,060,364	-		EFB2_04808	0.84	-1.3
5,060,364	-		EFB2_04808	0.84	+0.2
5,060,364	-		EFB2_04808	0.84	-1.0
5,060,364	-		EFB2_04808	0.84	+1.4
5,060,364	-		EFB2_04808	0.84	-1.0
5,060,364	-		EFB2_04808	0.84	-0.0
5,060,364	-		EFB2_04808	0.84	+1.3
5,060,364	-		EFB2_04808	0.84	+1.0
5,060,364	-		EFB2_04808	0.84	+1.0
5,060,364	-		EFB2_04808	0.84	+0.3
5,060,364	-		EFB2_04808	0.84	-1.6
5,060,364	-		EFB2_04808	0.84	-0.9
5,060,364	-		EFB2_04808	0.84	-0.8
5,060,364	-		EFB2_04808	0.84	-2.8
5,060,364	-		EFB2_04808	0.84	+0.3
5,060,364	-		EFB2_04808	0.84	-0.4
5,060,364	-		EFB2_04808	0.84	+0.2
5,060,373	+		EFB2_04808	0.84	+0.6
5,060,454	+		EFB2_04808	0.88	+0.1
5,060,455	-		EFB2_04808	0.88	+0.7
5,060,458	+		EFB2_04808	0.88	+0.7
5,060,458	+		EFB2_04808	0.88	-0.7
5,060,458	+		EFB2_04808	0.88	-2.4
5,060,459	-		EFB2_04808	0.88	-0.4
5,060,459	-		EFB2_04808	0.88	+0.7
5,060,459	-		EFB2_04808	0.88	-1.0
5,060,459	-		EFB2_04808	0.88	-3.0
5,060,459	-		EFB2_04808	0.88	-0.4
5,060,459	-		EFB2_04808	0.88	-1.6
5,060,531	+				-0.1
5,060,531	+				+1.4
5,060,531	+				-1.5
5,060,531	+				+0.1
5,060,531	+				+0.9
5,060,531	+				-0.4
5,060,532	-				-0.7
5,060,565	+				+0.8
5,060,654	+				+0.4
5,060,654	+				+0.3
5,060,654	+				-1.9
5,060,655	-				-1.8
5,060,655	-				+0.3
5,060,655	-				+0.4
5,060,702	-				+1.6
5,060,718	+				-3.0
5,060,718	+				-2.7
5,060,718	+				-0.0
5,060,718	+				+0.1
5,060,719	-				+0.2
5,060,719	-				-0.5
5,060,719	-				-1.0
5,060,731	+				-0.3
5,060,731	+				+0.2
5,060,731	+				-0.8
5,060,731	+				-1.3
5,060,731	+				+0.9
5,060,731	+				-0.7
5,060,731	+				-0.1
5,060,731	+				+1.5
5,060,731	+				+1.0
5,060,731	+				-3.3
5,060,731	+				-0.0
5,060,731	+				+0.4
5,060,731	+				+0.2
5,060,731	+				+0.0
5,060,731	+				-0.5
5,060,731	+				-2.3
5,060,731	+				+0.7
5,060,731	+				+0.5
5,060,731	+				+0.7
5,060,731	+				-0.7
5,060,731	+				+0.5
5,060,732	-				+0.5
5,060,732	-				+0.8
5,060,732	-				+0.1
5,060,732	-				-0.4
5,060,732	-				-0.7
5,060,732	-				+0.4
5,060,732	-				+0.6
5,060,732	-				+0.7
5,060,732	-				-0.3
5,060,732	-				+0.5
5,060,732	-				+0.4
5,060,732	-				-2.4
5,060,732	-				+0.2
5,060,732	-				-0.1
5,060,732	-				+0.6
5,060,732	-				-0.9
5,060,732	-				-0.8
5,060,732	-				+0.4
5,060,732	-				-0.6
5,060,732	-				-1.0
5,060,732	-				+0.5
5,060,732	-				-0.6
5,060,733	+				+1.3
5,060,733	+				+0.5
5,060,733	+				+0.4
5,060,733	+				-3.0
5,060,733	+				-1.9
5,060,733	+				-1.4
5,060,733	+				-3.9
5,060,733	+				-0.6
5,060,733	+				+3.9
5,060,733	+				-1.0
5,060,733	+				+0.7
5,060,733	+				-2.5
5,060,733	+				+0.0
5,060,733	+				+0.9
5,060,733	+				+1.3
5,060,733	+				-2.7
5,060,733	+				-3.0
5,060,733	+				-0.7
5,060,733	+				-1.0
5,060,733	+				-0.5
5,060,733	+				-0.3
5,060,733	+				-1.1
5,060,733	+				-1.3
5,060,733	+				+0.2
5,060,733	+				-0.4
5,060,734	-				-0.5
5,060,734	-				-0.1
5,060,734	-				-1.5
5,060,734	-				+0.9
5,060,734	-				+1.4
5,060,734	-				-1.8
5,060,734	-				-1.3
5,060,734	-				+1.1
5,060,734	-				-1.0
5,060,734	-				+0.2
5,060,734	-				+0.5
5,060,734	-				-0.7
5,060,734	-				-0.8
5,060,734	-				-0.9
5,060,734	-				+0.8
5,060,734	-				+0.0
5,060,734	-				+0.1
5,060,734	-				+0.3
5,060,734	-				-2.3
5,060,734	-				+0.1
5,060,734	-				+1.3
5,060,734	-				-2.2
5,060,734	-				+0.8
5,060,734	-				+0.6
5,060,734	-				+0.1
5,060,734	-				-0.7
5,060,734	-				-1.0
5,060,734	-				-2.1
5,060,734	-				+1.7
5,060,734	-				-0.0
5,060,734	-				-0.8
5,060,734	-				+0.8
5,060,734	-				-0.6
5,060,734	-				-1.2
5,060,734	-				+0.4
5,060,734	-				-1.1
5,060,734	-				-2.9
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