Strain Fitness in Escherichia fergusonii Becca around EFB2_04805

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
5,055,623	+		EFB2_04804	0.13	-1.0
5,055,623	+		EFB2_04804	0.13	+0.7
5,055,623	+		EFB2_04804	0.13	-0.6
5,055,623	+		EFB2_04804	0.13	+0.6
5,055,623	+		EFB2_04804	0.13	-2.4
5,055,623	+		EFB2_04804	0.13	+1.0
5,055,623	+		EFB2_04804	0.13	+0.2
5,055,624	-		EFB2_04804	0.13	+0.2
5,055,624	-		EFB2_04804	0.13	-1.0
5,055,624	-		EFB2_04804	0.13	+0.5
5,055,624	-		EFB2_04804	0.13	+0.6
5,055,624	-		EFB2_04804	0.13	-0.3
5,055,624	-		EFB2_04804	0.13	+0.7
5,055,624	-		EFB2_04804	0.13	+0.7
5,055,657	+		EFB2_04804	0.19	+0.5
5,055,657	+		EFB2_04804	0.19	-0.1
5,055,657	+		EFB2_04804	0.19	-0.2
5,055,657	+		EFB2_04804	0.19	-1.2
5,055,657	+		EFB2_04804	0.19	-2.7
5,055,657	+		EFB2_04804	0.19	-0.4
5,055,657	+		EFB2_04804	0.19	+0.3
5,055,657	+		EFB2_04804	0.19	+0.4
5,055,657	+		EFB2_04804	0.19	-0.8
5,055,658	-		EFB2_04804	0.19	+0.6
5,055,658	-		EFB2_04804	0.19	-0.4
5,055,658	-		EFB2_04804	0.19	-1.3
5,055,658	-		EFB2_04804	0.19	+0.2
5,055,658	-		EFB2_04804	0.19	-1.1
5,055,658	-		EFB2_04804	0.19	+0.1
5,055,658	-		EFB2_04804	0.19	+2.6
5,055,658	-		EFB2_04804	0.19	-1.0
5,055,658	-		EFB2_04804	0.19	+0.9
5,055,658	-		EFB2_04804	0.19	+1.6
5,055,658	-		EFB2_04804	0.19	+0.1
5,055,658	-		EFB2_04804	0.19	-0.4
5,055,754	+		EFB2_04804	0.36	+0.7
5,055,754	+		EFB2_04804	0.36	-0.2
5,055,755	-		EFB2_04804	0.37	+0.9
5,055,755	-		EFB2_04804	0.37	+0.7
5,055,755	-		EFB2_04804	0.37	+0.0
5,055,862	+		EFB2_04804	0.56	+0.1
5,055,862	+		EFB2_04804	0.56	+0.2
5,055,893	-		EFB2_04804	0.61	-0.0
5,055,912	+		EFB2_04804	0.65	+1.9
5,055,912	+		EFB2_04804	0.65	-0.0
5,055,912	+		EFB2_04804	0.65	+0.9
5,055,912	+		EFB2_04804	0.65	-2.5
5,055,912	+		EFB2_04804	0.65	+0.9
5,055,912	+		EFB2_04804	0.65	-0.2
5,055,912	+		EFB2_04804	0.65	-0.0
5,055,913	-		EFB2_04804	0.65	-0.2
5,055,913	-		EFB2_04804	0.65	+1.1
5,055,913	-		EFB2_04804	0.65	+0.7
5,055,913	-		EFB2_04804	0.65	-2.3
5,055,913	-		EFB2_04804	0.65	+0.1
5,055,928	+		EFB2_04804	0.68	+1.2
5,055,929	-		EFB2_04804	0.68	+0.9
5,055,929	-		EFB2_04804	0.68	-0.1
5,055,929	-		EFB2_04804	0.68	+0.9
5,055,984	+		EFB2_04804	0.78	-2.1
5,055,984	+		EFB2_04804	0.78	-1.3
5,055,985	-		EFB2_04804	0.78	+0.6
5,055,985	-		EFB2_04804	0.78	-0.7
5,055,985	-		EFB2_04804	0.78	-0.6
5,056,012	+		EFB2_04804	0.83	+2.0
5,056,012	+		EFB2_04804	0.83	-2.3
5,056,013	-		EFB2_04804	0.83	+0.8
5,056,013	-		EFB2_04804	0.83	-0.2
5,056,048	+		EFB2_04804	0.89	-1.0
5,056,067	+				+1.1
5,056,067	+				-1.2
5,056,068	-				+1.1
5,056,068	-				-0.3
5,056,068	-				+0.1
5,056,068	-				+1.2
5,056,068	-				+0.9
5,056,068	-				-2.2
5,056,068	-				-0.3
5,056,068	-				+1.4
5,056,068	-				+0.6
5,056,092	+				+0.3
5,056,092	+				-0.2
5,056,092	+				-0.5
5,056,092	+				+1.6
5,056,092	+				+0.9
5,056,092	+				-2.4
5,056,092	+				-0.1
5,056,092	+				+0.8
5,056,093	-				+0.3
5,056,093	-				+0.2
5,056,093	-				+0.8
5,056,093	-				-0.8
5,056,093	-				-0.4
5,056,093	-				-0.2
5,056,093	-				-0.2
5,056,093	-				+0.4
5,056,093	-				+0.3
5,056,093	-				+0.6
5,056,093	-				+0.2
5,056,195	+				-0.3
5,056,196	-				-0.4
5,056,214	-				-0.7
5,056,222	+				+1.6
5,056,266	+				-1.7
5,056,266	+				+1.5
5,056,266	+				+0.5
5,056,267	-				-0.3
5,056,267	-				-0.8
5,056,311	+				-1.1
5,056,311	+				+0.5
5,056,312	-				+0.7
5,056,322	+				+0.4
5,056,352	+				+0.3
5,056,355	-				+1.2
5,056,355	-				+1.6
5,056,355	-				+0.7
5,056,355	-				-2.0
5,056,355	-				-1.0
5,056,355	-				-0.5
5,056,355	-				+0.4
5,056,387	-				-1.6
5,056,391	+				-0.0
5,056,391	+				-1.0
5,056,391	+				+1.2
5,056,391	+				-0.2
5,056,392	-				+0.6
5,056,393	+				-2.0
5,056,393	+				+0.5
5,056,394	-				-0.9
5,056,394	-				-0.1
5,056,394	-				+0.7
5,056,437	-				+0.5
5,056,523	-				-0.4
5,056,640	+		EFB2_04805	0.16	-2.0
5,056,641	-		EFB2_04805	0.16	-0.5
5,056,641	-		EFB2_04805	0.16	-1.5
5,056,672	+		EFB2_04805	0.27	-3.0
5,056,672	+		EFB2_04805	0.27	-0.8
5,056,672	+		EFB2_04805	0.27	+0.6
5,056,673	-		EFB2_04805	0.27	+0.7
5,056,673	-		EFB2_04805	0.27	+0.3
5,056,723	+		EFB2_04805	0.44	-3.8
5,056,727	+		EFB2_04805	0.46	-0.5
5,056,727	+		EFB2_04805	0.46	+1.0
5,056,728	-		EFB2_04805	0.46	+0.4
5,056,728	-		EFB2_04805	0.46	-2.8
5,056,730	+		EFB2_04805	0.47	+1.9
5,056,731	-		EFB2_04805	0.47	+0.7
5,056,731	-		EFB2_04805	0.47	+0.3
5,056,734	-		EFB2_04805	0.48	-0.9
5,056,737	-		EFB2_04805	0.49	+1.1
5,056,737	-		EFB2_04805	0.49	-0.0
5,056,762	+		EFB2_04805	0.57	+1.0
5,056,812	-		EFB2_04805	0.74	+1.1
5,056,830	-		EFB2_04805	0.81	-0.1
5,056,861	-				+0.2
5,056,871	+				+0.8
5,056,871	+				-0.1
5,056,894	-				+0.3
5,056,993	-				-3.0
5,056,993	-				+0.0
5,056,994	+				+1.8
5,056,994	+				+1.8
5,056,994	+				+1.9
5,056,995	-				+1.7
5,056,995	-				+1.1
5,056,995	-				+1.1
5,056,995	-				-2.1
5,056,995	-				-0.1
5,056,995	-				-1.8
5,056,995	-				-1.3
5,056,995	-				-0.2
5,056,997	-				+0.3
5,056,997	-				-0.2
5,057,018	+				+1.1
5,057,018	+				-0.1
5,057,055	+				-2.0
5,057,055	+				-2.4
5,057,056	-				-0.7
5,057,056	-				+0.9
5,057,056	-				-1.8
5,057,070	-				+0.1
5,057,072	-				-1.1
5,057,093	+				+0.4
5,057,093	+				-1.1
5,057,117	+				-1.3
5,057,117	+				-1.3
5,057,120	+				-0.1
5,057,120	+				+0.4
5,057,155	+				+2.2
5,057,157	+				+0.9
5,057,157	+				+0.5
5,057,157	+				-0.5
5,057,157	+				-0.1
5,057,157	+				-2.1
5,057,157	+				-1.0
5,057,157	+				-0.4
5,057,157	+				-0.5
5,057,157	+				-0.3
5,057,157	+				+0.0
5,057,157	+				-2.2
5,057,157	+				-0.7
5,057,157	+				+0.8
5,057,157	+				-0.0
5,057,157	+				-1.6
5,057,157	+				+0.7
5,057,157	+				-1.5
5,057,157	+				+1.9
5,057,157	+				-1.1
5,057,157	+				-1.8
5,057,157	+				+1.4
5,057,157	+				+0.7
5,057,158	-				+0.0
5,057,158	-				+0.3
5,057,158	-				-2.6
5,057,158	-				-0.1
5,057,158	-				-1.2
5,057,158	-				+0.4
5,057,158	-				+1.0
5,057,158	-				-2.9
5,057,158	-				-1.0
5,057,158	-				-0.2
5,057,158	-				+1.5
5,057,158	-				-0.7
5,057,158	-				-1.1
5,057,224	-				-1.7
5,057,252	-				-3.1
5,057,273	-				+0.4
5,057,273	-				-0.9
5,057,273	-				-0.3
5,057,273	-				+0.3
5,057,273	-				+0.4
5,057,350	+		EFB2_04806	0.12	+1.8
5,057,350	+		EFB2_04806	0.12	-0.7
5,057,351	-		EFB2_04806	0.12	-2.1
5,057,351	-		EFB2_04806	0.12	-0.0
5,057,366	+		EFB2_04806	0.16	-1.3
5,057,366	+		EFB2_04806	0.16	-2.2
5,057,367	-		EFB2_04806	0.16	+0.1
5,057,367	-		EFB2_04806	0.16	-1.5
5,057,367	-		EFB2_04806	0.16	+0.0
5,057,406	+		EFB2_04806	0.25	+0.3
5,057,407	+		EFB2_04806	0.25	+0.1
5,057,407	+		EFB2_04806	0.25	-1.8
5,057,407	+		EFB2_04806	0.25	+0.3
5,057,407	+		EFB2_04806	0.25	+0.8
5,057,407	+		EFB2_04806	0.25	+0.2
5,057,407	+		EFB2_04806	0.25	-2.4
5,057,407	+		EFB2_04806	0.25	+0.8
5,057,408	-		EFB2_04806	0.26	+0.7
5,057,408	-		EFB2_04806	0.26	+1.2
5,057,408	-		EFB2_04806	0.26	+0.1
5,057,416	+		EFB2_04806	0.28	+1.8
5,057,416	+		EFB2_04806	0.28	+0.5
5,057,416	+		EFB2_04806	0.28	+1.0
5,057,416	+		EFB2_04806	0.28	-0.4
5,057,416	+		EFB2_04806	0.28	+1.1
5,057,416	+		EFB2_04806	0.28	+1.1
5,057,417	-		EFB2_04806	0.28	+0.3
5,057,417	-		EFB2_04806	0.28	-1.0
5,057,427	-		EFB2_04806	0.30	+1.3
5,057,435	+		EFB2_04806	0.32	+0.1
5,057,441	+		EFB2_04806	0.33	+0.1
5,057,442	-		EFB2_04806	0.34	-0.9
5,057,442	-		EFB2_04806	0.34	+1.1
5,057,456	+		EFB2_04806	0.37	-3.0
5,057,456	+		EFB2_04806	0.37	+0.9
5,057,456	+		EFB2_04806	0.37	-0.7
5,057,483	+		EFB2_04806	0.43	-1.0
5,057,483	+		EFB2_04806	0.43	-0.4
5,057,492	-		EFB2_04806	0.45	+0.0
5,057,492	-		EFB2_04806	0.45	-1.6
5,057,556	+		EFB2_04806	0.60	+0.9
5,057,559	+		EFB2_04806	0.61	-0.8
5,057,560	-		EFB2_04806	0.61	-1.3
5,057,560	-		EFB2_04806	0.61	+0.9
5,057,560	-		EFB2_04806	0.61	+0.5
5,057,561	+		EFB2_04806	0.61	-3.7
5,057,561	+		EFB2_04806	0.61	+1.1
5,057,561	+		EFB2_04806	0.61	-0.1
5,057,561	+		EFB2_04806	0.61	+1.9
5,057,561	+		EFB2_04806	0.61	-3.0
5,057,581	-		EFB2_04806	0.66	-0.3
5,057,595	-		EFB2_04806	0.69	-3.2
5,057,599	+		EFB2_04806	0.70	-3.1
5,057,629	+		EFB2_04806	0.77	+1.8
5,057,645	-		EFB2_04806	0.81	-0.3
5,057,660	+		EFB2_04806	0.84	+0.1
5,057,661	-		EFB2_04806	0.85	-2.9
5,057,661	-		EFB2_04806	0.85	-0.7
5,057,672	-		EFB2_04806	0.87	+0.9
5,057,701	+				+0.3
5,057,737	-				-0.8
5,057,777	-		EFB2_04807	0.21	+0.5
5,057,806	+		EFB2_04807	0.32	-2.5
5,057,811	+		EFB2_04807	0.34	+0.3
5,057,811	+		EFB2_04807	0.34	-1.4
5,057,811	+		EFB2_04807	0.34	+0.6
5,057,811	+		EFB2_04807	0.34	+0.1
5,057,812	-		EFB2_04807	0.34	-0.1
5,057,815	+		EFB2_04807	0.36	+0.6
5,057,815	+		EFB2_04807	0.36	-0.1
5,057,816	-		EFB2_04807	0.36	-2.4
5,057,816	-		EFB2_04807	0.36	-0.3
5,057,824	+		EFB2_04807	0.39	-0.7
5,057,825	-		EFB2_04807	0.40	-1.5
5,057,825	-		EFB2_04807	0.40	-2.8
5,057,844	+		EFB2_04807	0.47	+0.7
5,057,844	+		EFB2_04807	0.47	+0.4
5,057,856	+		EFB2_04807	0.52	+0.9
5,057,857	-		EFB2_04807	0.52	+1.2
5,057,857	-		EFB2_04807	0.52	+0.9
5,057,870	-		EFB2_04807	0.57	+0.9