Strain Fitness in Escherichia fergusonii Becca around EFB2_04585

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,816,014	+				-2.2
4,816,014	+				-1.0
4,816,014	+				-1.0
4,816,014	+				+1.4
4,816,014	+				+0.2
4,816,049	+				-0.8
4,816,084	+		EFB2_04583	0.17	+0.4
4,816,084	+		EFB2_04583	0.17	+1.4
4,816,084	+		EFB2_04583	0.17	+0.4
4,816,085	-		EFB2_04583	0.17	-1.7
4,816,085	-		EFB2_04583	0.17	+0.5
4,816,163	+		EFB2_04583	0.36	+0.8
4,816,164	-		EFB2_04583	0.37	-1.5
4,816,167	-		EFB2_04583	0.37	-0.8
4,816,194	-		EFB2_04583	0.44	-0.3
4,816,208	+		EFB2_04583	0.47	-0.1
4,816,208	+		EFB2_04583	0.47	-2.7
4,816,209	-		EFB2_04583	0.48	-1.2
4,816,209	-		EFB2_04583	0.48	+1.2
4,816,209	-		EFB2_04583	0.48	+0.8
4,816,209	-		EFB2_04583	0.48	-0.4
4,816,209	-		EFB2_04583	0.48	-2.8
4,816,332	+		EFB2_04583	0.78	-2.0
4,816,332	+		EFB2_04583	0.78	+0.5
4,816,332	+		EFB2_04583	0.78	-0.5
4,816,333	-		EFB2_04583	0.78	-0.4
4,816,333	-		EFB2_04583	0.78	+0.6
4,816,333	-		EFB2_04583	0.78	-0.4
4,816,333	-		EFB2_04583	0.78	-0.2
4,816,430	+				+0.0
4,816,430	+				-1.8
4,816,430	+				-0.7
4,816,430	+				+2.4
4,816,431	-				-1.8
4,816,431	-				+0.0
4,816,431	-				-0.8
4,816,431	-				+0.1
4,816,431	-				-0.7
4,816,487	+		EFB2_04584	0.13	+0.7
4,816,487	+		EFB2_04584	0.13	+0.4
4,816,487	+		EFB2_04584	0.13	-2.2
4,816,488	-		EFB2_04584	0.13	+1.3
4,816,488	-		EFB2_04584	0.13	-2.4
4,816,488	-		EFB2_04584	0.13	-1.0
4,816,488	-		EFB2_04584	0.13	-0.0
4,816,488	-		EFB2_04584	0.13	+0.2
4,816,511	+		EFB2_04584	0.18	-0.6
4,816,511	+		EFB2_04584	0.18	-2.6
4,816,511	+		EFB2_04584	0.18	+1.3
4,816,511	+		EFB2_04584	0.18	-1.2
4,816,511	+		EFB2_04584	0.18	-0.0
4,816,511	+		EFB2_04584	0.18	-0.2
4,816,512	-		EFB2_04584	0.18	+0.0
4,816,512	-		EFB2_04584	0.18	-1.7
4,816,512	-		EFB2_04584	0.18	+1.0
4,816,512	-		EFB2_04584	0.18	-0.3
4,816,512	-		EFB2_04584	0.18	+0.8
4,816,512	-		EFB2_04584	0.18	+0.7
4,816,512	-		EFB2_04584	0.18	+0.4
4,816,512	-		EFB2_04584	0.18	-1.8
4,816,514	+		EFB2_04584	0.19	+1.4
4,816,514	+		EFB2_04584	0.19	-0.2
4,816,514	+		EFB2_04584	0.19	+0.1
4,816,514	+		EFB2_04584	0.19	+0.5
4,816,514	+		EFB2_04584	0.19	+0.3
4,816,514	+		EFB2_04584	0.19	-0.8
4,816,514	+		EFB2_04584	0.19	+0.8
4,816,515	-		EFB2_04584	0.19	+1.1
4,816,515	-		EFB2_04584	0.19	-1.5
4,816,515	-		EFB2_04584	0.19	-0.2
4,816,515	-		EFB2_04584	0.19	-0.2
4,816,533	+		EFB2_04584	0.22	+0.2
4,816,533	+		EFB2_04584	0.22	-2.3
4,816,533	+		EFB2_04584	0.22	+1.9
4,816,534	-		EFB2_04584	0.23	-1.8
4,816,534	-		EFB2_04584	0.23	+0.7
4,816,535	+		EFB2_04584	0.23	+0.5
4,816,536	-		EFB2_04584	0.23	+2.1
4,816,536	-		EFB2_04584	0.23	-0.5
4,816,558	+		EFB2_04584	0.27	+1.0
4,816,558	+		EFB2_04584	0.27	-1.1
4,816,558	+		EFB2_04584	0.27	-1.6
4,816,559	-		EFB2_04584	0.28	-1.8
4,816,559	-		EFB2_04584	0.28	-0.7
4,816,604	+		EFB2_04584	0.37	+2.4
4,816,627	-		EFB2_04584	0.41	-0.1
4,816,690	+		EFB2_04584	0.54	-0.4
4,816,717	+		EFB2_04584	0.60	-0.9
4,816,721	+		EFB2_04584	0.60	+0.2
4,816,721	+		EFB2_04584	0.60	-4.0
4,816,722	-		EFB2_04584	0.61	+1.2
4,816,722	-		EFB2_04584	0.61	-0.1
4,816,757	+		EFB2_04584	0.68	+0.7
4,816,787	-		EFB2_04584	0.74	+0.4
4,816,800	-		EFB2_04584	0.76	-2.2
4,816,820	-		EFB2_04584	0.80	-0.6
4,816,823	+		EFB2_04584	0.81	+0.2
4,816,878	-				+1.6
4,816,921	+				-0.0
4,816,932	+				+1.7
4,816,936	+				+0.4
4,816,936	+				-1.2
4,816,936	+				-0.0
4,816,936	+				-0.2
4,816,936	+				+0.5
4,816,937	-				+0.5
4,816,937	-				+2.7
4,816,937	-				+0.2
4,816,937	-				+0.0
4,816,937	-				+0.4
4,816,937	-				-2.6
4,816,937	-				-0.7
4,816,937	-				-0.2
4,816,967	-				+1.2
4,816,989	+				-0.1
4,816,989	+				+1.0
4,816,989	+				-3.9
4,816,989	+				-1.1
4,816,990	-				+1.1
4,816,990	-				+0.6
4,816,990	-				-1.0
4,816,993	+				-1.5
4,816,994	-				+3.2
4,816,998	+				+0.2
4,817,011	+				+1.4
4,817,012	-				-0.2
4,817,012	-				-2.8
4,817,013	+				-0.3
4,817,014	-				+0.6
4,817,089	+		EFB2_04585	0.13	-0.4
4,817,089	+		EFB2_04585	0.13	-0.4
4,817,089	+		EFB2_04585	0.13	+0.5
4,817,103	+		EFB2_04585	0.15	+0.8
4,817,103	+		EFB2_04585	0.15	+1.7
4,817,131	+		EFB2_04585	0.19	-2.3
4,817,131	+		EFB2_04585	0.19	+0.7
4,817,131	+		EFB2_04585	0.19	+1.4
4,817,131	+		EFB2_04585	0.19	-0.1
4,817,131	+		EFB2_04585	0.19	+0.3
4,817,132	-		EFB2_04585	0.19	+0.4
4,817,132	-		EFB2_04585	0.19	-1.1
4,817,132	-		EFB2_04585	0.19	+1.7
4,817,144	-		EFB2_04585	0.20	-1.3
4,817,144	-		EFB2_04585	0.20	+1.5
4,817,157	+		EFB2_04585	0.22	+0.8
4,817,157	+		EFB2_04585	0.22	-2.6
4,817,157	+		EFB2_04585	0.22	+0.5
4,817,157	+		EFB2_04585	0.22	-0.5
4,817,157	+		EFB2_04585	0.22	+0.9
4,817,157	+		EFB2_04585	0.22	-1.2
4,817,157	+		EFB2_04585	0.22	+1.1
4,817,158	-		EFB2_04585	0.22	-3.4
4,817,158	-		EFB2_04585	0.22	-0.1
4,817,217	+		EFB2_04585	0.29	-3.7
4,817,217	+		EFB2_04585	0.29	-0.1
4,817,217	+		EFB2_04585	0.29	-1.2
4,817,217	+		EFB2_04585	0.29	-0.2
4,817,217	+		EFB2_04585	0.29	+1.2
4,817,218	-		EFB2_04585	0.30	+0.3
4,817,323	+		EFB2_04585	0.43	-2.5
4,817,334	+		EFB2_04585	0.44	+0.4
4,817,334	+		EFB2_04585	0.44	-0.1
4,817,335	-		EFB2_04585	0.44	+0.6
4,817,335	-		EFB2_04585	0.44	-1.0
4,817,392	+		EFB2_04585	0.51	-0.3
4,817,437	+		EFB2_04585	0.57	+0.2
4,817,437	+		EFB2_04585	0.57	-0.0
4,817,438	-		EFB2_04585	0.57	+2.8
4,817,476	+		EFB2_04585	0.62	-0.2
4,817,476	+		EFB2_04585	0.62	-0.7
4,817,476	+		EFB2_04585	0.62	-1.4
4,817,476	+		EFB2_04585	0.62	+1.0
4,817,477	-		EFB2_04585	0.62	-0.0
4,817,477	-		EFB2_04585	0.62	+1.0
4,817,477	-		EFB2_04585	0.62	-0.2
4,817,477	-		EFB2_04585	0.62	+1.5
4,817,477	-		EFB2_04585	0.62	-1.2
4,817,488	+		EFB2_04585	0.63	+0.3
4,817,488	+		EFB2_04585	0.63	+0.1
4,817,488	+		EFB2_04585	0.63	+0.6
4,817,488	+		EFB2_04585	0.63	-0.2
4,817,488	+		EFB2_04585	0.63	-1.0
4,817,488	+		EFB2_04585	0.63	-0.0
4,817,488	+		EFB2_04585	0.63	-0.8
4,817,488	+		EFB2_04585	0.63	+1.8
4,817,488	+		EFB2_04585	0.63	+0.5
4,817,488	+		EFB2_04585	0.63	+0.6
4,817,488	+		EFB2_04585	0.63	-2.7
4,817,488	+		EFB2_04585	0.63	-1.3
4,817,488	+		EFB2_04585	0.63	+0.4
4,817,488	+		EFB2_04585	0.63	-1.1
4,817,488	+		EFB2_04585	0.63	-0.0
4,817,489	-		EFB2_04585	0.64	-1.1
4,817,489	-		EFB2_04585	0.64	-0.1
4,817,489	-		EFB2_04585	0.64	+1.2
4,817,489	-		EFB2_04585	0.64	+1.0
4,817,489	-		EFB2_04585	0.64	+2.0
4,817,489	-		EFB2_04585	0.64	-1.4
4,817,489	-		EFB2_04585	0.64	-1.4
4,817,489	-		EFB2_04585	0.64	-0.7
4,817,489	-		EFB2_04585	0.64	+0.5
4,817,489	-		EFB2_04585	0.64	-1.2
4,817,489	-		EFB2_04585	0.64	-1.0
4,817,489	-		EFB2_04585	0.64	+0.4
4,817,489	-		EFB2_04585	0.64	-1.1
4,817,489	-		EFB2_04585	0.64	-0.0
4,817,489	-		EFB2_04585	0.64	+0.8
4,817,489	-		EFB2_04585	0.64	-0.2
4,817,489	-		EFB2_04585	0.64	-0.7
4,817,546	-		EFB2_04585	0.71	+0.7
4,817,546	-		EFB2_04585	0.71	+2.0
4,817,594	+		EFB2_04585	0.77	-0.3
4,817,594	+		EFB2_04585	0.77	+0.5
4,817,595	-		EFB2_04585	0.77	+0.1
4,817,636	+		EFB2_04585	0.82	-3.7
4,817,636	+		EFB2_04585	0.82	+0.5
4,817,637	-		EFB2_04585	0.82	+0.6
4,817,693	+		EFB2_04585	0.89	-0.8
4,817,693	+		EFB2_04585	0.89	-1.6
4,817,693	+		EFB2_04585	0.89	-0.5
4,817,693	+		EFB2_04585	0.89	-0.5
4,817,693	+		EFB2_04585	0.89	+1.6
4,817,693	+		EFB2_04585	0.89	-0.5
4,817,694	-		EFB2_04585	0.89	+0.5
4,817,694	-		EFB2_04585	0.89	+1.5
4,817,694	-		EFB2_04585	0.89	-1.1
4,817,694	-		EFB2_04585	0.89	-2.9
4,817,694	-		EFB2_04585	0.89	-0.5
4,817,694	-		EFB2_04585	0.89	-1.7
4,817,694	-		EFB2_04585	0.89	+0.6
4,817,694	-		EFB2_04585	0.89	-0.3
4,817,703	+				-0.1
4,817,703	+				-0.1
4,817,703	+				+0.9
4,817,704	-				-2.7
4,817,719	+				+0.2
4,817,719	+				+0.2
4,817,719	+				+0.9
4,817,720	-				+0.6
4,817,720	-				-0.1
4,817,749	+				-0.2
4,817,749	+				-0.3
4,817,750	-				+0.9
4,817,750	-				+1.0
4,817,750	-				-0.9
4,817,750	-				+0.7
4,817,807	+				+1.3
4,817,808	-				+1.2
4,817,808	-				+1.3
4,817,865	-				+0.1
4,817,865	-				+1.5
4,817,876	+		EFB2_04586	0.10	-0.7
4,817,876	+		EFB2_04586	0.10	+0.5
4,817,876	+		EFB2_04586	0.10	-1.5
4,817,876	+		EFB2_04586	0.10	-1.9
4,817,877	-		EFB2_04586	0.11	+0.1
4,817,877	-		EFB2_04586	0.11	-1.4
4,817,877	-		EFB2_04586	0.11	-2.4
4,817,877	-		EFB2_04586	0.11	+0.5
4,817,877	-		EFB2_04586	0.11	-2.2
4,817,877	-		EFB2_04586	0.11	-0.2
4,817,877	-		EFB2_04586	0.11	+0.8
4,817,877	-		EFB2_04586	0.11	+0.5
4,817,877	-		EFB2_04586	0.11	+1.4
4,817,928	+		EFB2_04586	0.17	+0.5
4,817,935	+		EFB2_04586	0.18	-0.3
4,817,935	+		EFB2_04586	0.18	+0.6
4,817,935	+		EFB2_04586	0.18	+0.5
4,817,935	+		EFB2_04586	0.18	-1.0
4,817,935	+		EFB2_04586	0.18	-0.5
4,817,984	+		EFB2_04586	0.24	-0.6
4,817,984	+		EFB2_04586	0.24	+2.1
4,817,984	+		EFB2_04586	0.24	-0.1
4,817,984	+		EFB2_04586	0.24	-0.7
4,817,984	+		EFB2_04586	0.24	-1.6
4,817,985	-		EFB2_04586	0.24	+0.7
4,817,998	+		EFB2_04586	0.25	+0.7
4,817,998	+		EFB2_04586	0.25	-0.1
4,817,998	+		EFB2_04586	0.25	-2.2
4,817,998	+		EFB2_04586	0.25	+0.6
4,817,998	+		EFB2_04586	0.25	-0.5
4,817,998	+		EFB2_04586	0.25	+0.2
4,817,998	+		EFB2_04586	0.25	-1.3
4,817,998	+		EFB2_04586	0.25	-1.2
4,817,998	+		EFB2_04586	0.25	+0.0
4,817,999	-		EFB2_04586	0.25	+1.1
4,817,999	-		EFB2_04586	0.25	+1.2
4,818,071	+		EFB2_04586	0.34	-0.4
4,818,091	+		EFB2_04586	0.36	-0.5
4,818,091	+		EFB2_04586	0.36	-0.4
4,818,091	+		EFB2_04586	0.36	+0.7
4,818,092	-		EFB2_04586	0.37	+0.5
4,818,092	-		EFB2_04586	0.37	-1.3
4,818,092	-		EFB2_04586	0.37	+1.1
4,818,092	-		EFB2_04586	0.37	-0.5
4,818,221	+		EFB2_04586	0.52	+0.5
4,818,255	+		EFB2_04586	0.56	-1.7
4,818,256	-		EFB2_04586	0.56	+1.0
4,818,262	+		EFB2_04586	0.57	-2.3
4,818,263	-		EFB2_04586	0.57	+0.5
4,818,400	+		EFB2_04586	0.74	-0.4
4,818,400	+		EFB2_04586	0.74	+0.4
4,818,400	+		EFB2_04586	0.74	-0.3
4,818,400	+		EFB2_04586	0.74	+0.3
4,818,400	+		EFB2_04586	0.74	-1.1
4,818,400	+		EFB2_04586	0.74	-2.5
4,818,400	+		EFB2_04586	0.74	+2.1
4,818,401	-		EFB2_04586	0.74	-0.1
4,818,401	-		EFB2_04586	0.74	-0.6
4,818,401	-		EFB2_04586	0.74	+0.6
4,818,401	-		EFB2_04586	0.74	+0.8
4,818,401	-		EFB2_04586	0.74	+1.3
4,818,401	-		EFB2_04586	0.74	-0.2
4,818,401	-		EFB2_04586	0.74	+0.3
4,818,401	-		EFB2_04586	0.74	-3.5
4,818,452	-		EFB2_04586	0.80	-0.8
4,818,551	-				+0.6
4,818,665	+				-0.2
4,818,666	-				-1.9
4,818,666	-				+0.1