Strain Fitness in Escherichia fergusonii Becca around EFB2_04358

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,578,825	+		EFB2_04356	0.87	+0.4
4,578,825	+		EFB2_04356	0.87	-0.5
4,578,825	+		EFB2_04356	0.87	-0.4
4,578,825	+		EFB2_04356	0.87	-1.0
4,578,825	+		EFB2_04356	0.87	+0.4
4,578,825	+		EFB2_04356	0.87	+0.9
4,578,825	+		EFB2_04356	0.87	+1.5
4,578,825	+		EFB2_04356	0.87	+1.0
4,578,825	+		EFB2_04356	0.87	+0.3
4,578,825	+		EFB2_04356	0.87	-0.3
4,578,825	+		EFB2_04356	0.87	-2.4
4,578,825	+		EFB2_04356	0.87	-0.4
4,578,826	-		EFB2_04356	0.87	-1.0
4,578,826	-		EFB2_04356	0.87	-2.0
4,578,826	-		EFB2_04356	0.87	+1.2
4,578,826	-		EFB2_04356	0.87	-0.5
4,578,826	-		EFB2_04356	0.87	-2.1
4,578,826	-		EFB2_04356	0.87	+0.4
4,578,838	+		EFB2_04356	0.87	-2.2
4,578,839	-		EFB2_04356	0.87	-1.1
4,578,839	-		EFB2_04356	0.87	+1.3
4,578,839	-		EFB2_04356	0.87	-1.2
4,578,839	-		EFB2_04356	0.87	+1.8
4,578,889	+		EFB2_04356	0.89	+0.1
4,578,889	+		EFB2_04356	0.89	+3.3
4,578,889	+		EFB2_04356	0.89	-0.3
4,578,890	-		EFB2_04356	0.89	+0.4
4,578,924	+				+1.5
4,578,924	+				+0.6
4,578,924	+				-1.3
4,578,924	+				-3.5
4,578,924	+				+1.4
4,578,924	+				+2.0
4,578,924	+				+0.3
4,578,924	+				+0.1
4,578,925	-				-1.3
4,578,925	-				+0.1
4,578,925	-				-0.5
4,578,925	-				-1.3
4,579,025	+				+2.3
4,579,026	-				-3.4
4,579,067	+				-0.5
4,579,068	-				-1.6
4,579,081	+				-1.9
4,579,093	+				-1.2
4,579,093	+				-0.2
4,579,093	+				+2.3
4,579,093	+				+0.5
4,579,093	+				-0.8
4,579,094	-				+1.0
4,579,111	-				+0.6
4,579,204	+				-1.8
4,579,204	+				-2.8
4,579,205	-				+1.2
4,579,210	-				-2.1
4,579,211	+				+0.2
4,579,212	-				+2.1
4,579,250	+		EFB2_04357	0.14	-2.4
4,579,250	+		EFB2_04357	0.14	-2.7
4,579,250	+		EFB2_04357	0.14	+1.8
4,579,250	+		EFB2_04357	0.14	-1.3
4,579,250	+		EFB2_04357	0.14	+0.6
4,579,250	+		EFB2_04357	0.14	-1.9
4,579,250	+		EFB2_04357	0.14	-0.3
4,579,250	+		EFB2_04357	0.14	-2.1
4,579,250	+		EFB2_04357	0.14	+1.7
4,579,250	+		EFB2_04357	0.14	-0.5
4,579,250	+		EFB2_04357	0.14	+0.3
4,579,250	+		EFB2_04357	0.14	+0.4
4,579,250	+		EFB2_04357	0.14	+1.5
4,579,251	-		EFB2_04357	0.15	-1.4
4,579,251	-		EFB2_04357	0.15	+1.2
4,579,251	-		EFB2_04357	0.15	-2.2
4,579,251	-		EFB2_04357	0.15	-0.5
4,579,251	-		EFB2_04357	0.15	+0.6
4,579,255	-		EFB2_04357	0.15	-2.0
4,579,287	+		EFB2_04357	0.23	-1.8
4,579,287	+		EFB2_04357	0.23	-2.3
4,579,287	+		EFB2_04357	0.23	+0.9
4,579,288	-		EFB2_04357	0.23	-0.4
4,579,288	-		EFB2_04357	0.23	+2.6
4,579,288	-		EFB2_04357	0.23	+0.9
4,579,320	+		EFB2_04357	0.31	+1.6
4,579,320	+		EFB2_04357	0.31	-0.8
4,579,320	+		EFB2_04357	0.31	+1.7
4,579,320	+		EFB2_04357	0.31	-1.0
4,579,320	+		EFB2_04357	0.31	-1.0
4,579,320	+		EFB2_04357	0.31	+2.7
4,579,320	+		EFB2_04357	0.31	-2.4
4,579,320	+		EFB2_04357	0.31	-0.2
4,579,320	+		EFB2_04357	0.31	+4.2
4,579,320	+		EFB2_04357	0.31	+1.1
4,579,320	+		EFB2_04357	0.31	+1.6
4,579,320	+		EFB2_04357	0.31	-2.9
4,579,320	+		EFB2_04357	0.31	-0.5
4,579,320	+		EFB2_04357	0.31	-1.0
4,579,320	+		EFB2_04357	0.31	-1.6
4,579,320	+		EFB2_04357	0.31	-1.2
4,579,321	-		EFB2_04357	0.31	+0.3
4,579,321	-		EFB2_04357	0.31	+1.3
4,579,321	-		EFB2_04357	0.31	+0.1
4,579,321	-		EFB2_04357	0.31	+0.9
4,579,321	-		EFB2_04357	0.31	-1.0
4,579,321	-		EFB2_04357	0.31	-1.3
4,579,321	-		EFB2_04357	0.31	-0.6
4,579,321	-		EFB2_04357	0.31	-0.4
4,579,321	-		EFB2_04357	0.31	-1.5
4,579,321	-		EFB2_04357	0.31	-0.2
4,579,321	-		EFB2_04357	0.31	-0.9
4,579,321	-		EFB2_04357	0.31	+1.7
4,579,321	-		EFB2_04357	0.31	+1.3
4,579,321	-		EFB2_04357	0.31	-4.1
4,579,321	-		EFB2_04357	0.31	+1.0
4,579,321	-		EFB2_04357	0.31	+0.1
4,579,321	-		EFB2_04357	0.31	+1.3
4,579,321	-		EFB2_04357	0.31	-0.7
4,579,321	-		EFB2_04357	0.31	-2.5
4,579,321	-		EFB2_04357	0.31	+0.7
4,579,321	-		EFB2_04357	0.31	+3.1
4,579,358	-		EFB2_04357	0.40	+2.3
4,579,389	+		EFB2_04357	0.47	+1.8
4,579,389	+		EFB2_04357	0.47	+0.1
4,579,389	+		EFB2_04357	0.47	-2.1
4,579,389	+		EFB2_04357	0.47	-0.2
4,579,389	+		EFB2_04357	0.47	+0.8
4,579,389	+		EFB2_04357	0.47	-1.5
4,579,389	+		EFB2_04357	0.47	+1.6
4,579,389	+		EFB2_04357	0.47	+0.9
4,579,389	+		EFB2_04357	0.47	-2.0
4,579,389	+		EFB2_04357	0.47	+1.1
4,579,389	+		EFB2_04357	0.47	-2.4
4,579,389	+		EFB2_04357	0.47	+1.7
4,579,389	+		EFB2_04357	0.47	-3.4
4,579,389	+		EFB2_04357	0.47	-0.3
4,579,390	-		EFB2_04357	0.47	+0.7
4,579,390	-		EFB2_04357	0.47	-0.1
4,579,390	-		EFB2_04357	0.47	+0.2
4,579,390	-		EFB2_04357	0.47	+1.4
4,579,390	-		EFB2_04357	0.47	-1.6
4,579,390	-		EFB2_04357	0.47	+0.6
4,579,390	-		EFB2_04357	0.47	-1.9
4,579,390	-		EFB2_04357	0.47	-1.5
4,579,390	-		EFB2_04357	0.47	+0.3
4,579,390	-		EFB2_04357	0.47	-1.8
4,579,390	-		EFB2_04357	0.47	-1.9
4,579,390	-		EFB2_04357	0.47	-2.7
4,579,390	-		EFB2_04357	0.47	-0.5
4,579,390	-		EFB2_04357	0.47	+0.0
4,579,393	+		EFB2_04357	0.48	+0.6
4,579,394	-		EFB2_04357	0.48	-2.3
4,579,394	-		EFB2_04357	0.48	-0.6
4,579,394	-		EFB2_04357	0.48	+0.0
4,579,454	+		EFB2_04357	0.62	-1.7
4,579,454	+		EFB2_04357	0.62	-1.5
4,579,454	+		EFB2_04357	0.62	-0.6
4,579,467	+		EFB2_04357	0.65	-2.8
4,579,468	-		EFB2_04357	0.65	-1.2
4,579,468	-		EFB2_04357	0.65	+1.1
4,579,468	-		EFB2_04357	0.65	-2.2
4,579,480	+		EFB2_04357	0.68	-1.1
4,579,481	-		EFB2_04357	0.69	-0.3
4,579,491	+		EFB2_04357	0.71	-0.9
4,579,491	+		EFB2_04357	0.71	-1.9
4,579,491	+		EFB2_04357	0.71	+0.4
4,579,491	+		EFB2_04357	0.71	+2.1
4,579,492	-		EFB2_04357	0.71	-1.5
4,579,492	-		EFB2_04357	0.71	+0.4
4,579,492	-		EFB2_04357	0.71	-0.1
4,579,492	-		EFB2_04357	0.71	+0.8
4,579,492	-		EFB2_04357	0.71	+0.8
4,579,511	+		EFB2_04357	0.76	+1.6
4,579,533	+		EFB2_04357	0.81	+1.3
4,579,534	-		EFB2_04357	0.81	-3.2
4,579,534	-		EFB2_04357	0.81	+0.2
4,579,568	+		EFB2_04357	0.89	+0.2
4,579,568	+		EFB2_04357	0.89	-3.0
4,579,568	+		EFB2_04357	0.89	-2.0
4,579,568	+		EFB2_04357	0.89	+0.1
4,579,568	+		EFB2_04357	0.89	+1.1
4,579,568	+		EFB2_04357	0.89	-2.5
4,579,568	+		EFB2_04357	0.89	+0.4
4,579,568	+		EFB2_04357	0.89	-1.7
4,579,568	+		EFB2_04357	0.89	-0.3
4,579,568	+		EFB2_04357	0.89	-1.3
4,579,569	-		EFB2_04357	0.89	-1.0
4,579,569	-		EFB2_04357	0.89	-0.4
4,579,569	-		EFB2_04357	0.89	+0.0
4,579,569	-		EFB2_04357	0.89	+0.6
4,579,569	-		EFB2_04357	0.89	+0.9
4,579,569	-		EFB2_04357	0.89	-1.8
4,579,569	-		EFB2_04357	0.89	+0.3
4,579,569	-		EFB2_04357	0.89	-0.4
4,579,569	-		EFB2_04357	0.89	-1.7
4,579,569	-		EFB2_04357	0.89	-1.4
4,579,583	-				+0.1
4,579,583	-				+0.3
4,579,583	-				+3.2
4,579,583	-				+0.9
4,579,606	+				+2.0
4,579,606	+				-0.9
4,579,646	-				-0.3
4,579,651	+				-1.6
4,579,651	+				+1.2
4,579,651	+				-3.1
4,579,651	+				+1.0
4,579,651	+				-1.2
4,579,651	+				+1.2
4,579,651	+				+0.1
4,579,651	+				-3.8
4,579,651	+				-1.8
4,579,651	+				+0.5
4,579,651	+				-1.4
4,579,651	+				-1.9
4,579,651	+				+1.3
4,579,652	-				-2.9
4,579,652	-				-1.4
4,579,652	-				+1.7
4,579,652	-				+0.2
4,579,652	-				-0.2
4,579,652	-				-1.4
4,579,652	-				+1.5
4,579,652	-				+1.2
4,579,652	-				+1.7
4,579,652	-				+1.3
4,579,652	-				-1.8
4,579,652	-				-0.0
4,579,652	-				-0.9
4,579,652	-				-2.1
4,579,652	-				-2.1
4,579,652	-				+2.1
4,579,652	-				+0.5
4,579,652	-				+0.7
4,579,652	-				-1.3
4,579,652	-				+0.6
4,579,652	-				+0.2
4,579,652	-				+0.5
4,579,653	+				-1.7
4,579,653	+				-1.3
4,579,653	+				-1.7
4,579,653	+				-1.6
4,579,653	+				+2.1
4,579,653	+				-1.4
4,579,653	+				-1.2
4,579,653	+				-0.2
4,579,654	-				-0.7
4,579,654	-				-2.5
4,579,654	-				+0.9
4,579,654	-				-0.7
4,579,662	+				+1.0
4,579,662	+				+1.6
4,579,691	+				+0.8
4,579,691	+				+0.3
4,579,692	-				-0.3
4,579,725	+				-1.1
4,579,725	+				+0.8
4,579,725	+				+0.3
4,579,725	+				-0.5
4,579,725	+				+1.0
4,579,725	+				-2.9
4,579,725	+				+0.2
4,579,726	-				-1.0
4,579,726	-				-1.5
4,579,726	-				+1.4
4,579,726	-				-1.2
4,579,726	-				+1.6
4,579,726	-				+0.9
4,579,745	+				-0.7
4,579,745	+				-0.1
4,579,745	+				+0.9
4,579,745	+				+0.2
4,579,745	+				-1.7
4,579,745	+				-2.5
4,579,745	+				+0.1
4,579,746	-				+0.7
4,579,746	-				-1.8
4,579,746	-				-0.6
4,579,746	-				-1.0
4,579,746	-				-0.2
4,579,746	-				-3.0
4,579,746	-				-0.1
4,579,746	-				+1.1
4,579,746	-				+0.3
4,579,746	-				-0.4
4,579,746	-				+2.8
4,579,746	-				-0.1
4,579,753	+				+1.0
4,579,753	+				-1.8
4,579,754	-				-1.8
4,579,770	+				-1.6
4,579,770	+				-0.9
4,579,770	+				+0.2
4,579,770	+				+0.3
4,579,770	+				-2.3
4,579,770	+				-0.0
4,579,770	+				+0.1
4,579,770	+				-0.2
4,579,770	+				+1.3
4,579,771	-				-0.6
4,579,771	-				+0.2
4,579,771	-				+0.3
4,579,771	-				+0.0
4,579,771	-				-0.5
4,579,771	-				+1.2
4,579,771	-				+0.2
4,579,771	-				+0.7
4,579,771	-				-1.3
4,579,771	-				-3.7
4,579,771	-				+1.5
4,579,771	-				+0.3
4,579,771	-				+0.8
4,579,771	-				+0.6
4,579,771	-				+0.8
4,579,799	-				+0.7
4,579,799	-				-1.7
4,579,820	+				-0.3
4,579,820	+				-0.7
4,579,821	-				-0.2
4,579,821	-				+1.7
4,579,922	+				+0.1
4,579,923	-				-0.4
4,579,923	-				+0.1
4,579,923	-				+1.8
4,579,923	-				-2.0
4,579,951	-		EFB2_04358	0.10	+0.8
4,580,012	-		EFB2_04358	0.15	+0.1
4,580,012	-		EFB2_04358	0.15	+2.0
4,580,070	+		EFB2_04358	0.19	-0.2
4,580,076	-		EFB2_04358	0.20	+0.4
4,580,214	+		EFB2_04358	0.30	+0.1
4,580,309	+		EFB2_04358	0.38	-1.2
4,580,343	-		EFB2_04358	0.40	-2.0
4,580,385	+		EFB2_04358	0.44	+0.4
4,580,402	-		EFB2_04358	0.45	-1.9
4,580,402	-		EFB2_04358	0.45	+0.1
4,580,405	+		EFB2_04358	0.45	-1.8
4,580,411	+		EFB2_04358	0.46	-0.4
4,580,411	+		EFB2_04358	0.46	+0.8
4,580,412	-		EFB2_04358	0.46	-0.6
4,580,412	-		EFB2_04358	0.46	+0.8
4,580,440	-		EFB2_04358	0.48	-1.0
4,580,517	+		EFB2_04358	0.54	+0.8
4,580,517	+		EFB2_04358	0.54	-1.5
4,580,517	+		EFB2_04358	0.54	-0.4
4,580,517	+		EFB2_04358	0.54	+0.8
4,580,517	+		EFB2_04358	0.54	+0.4
4,580,518	-		EFB2_04358	0.54	+2.4
4,580,518	-		EFB2_04358	0.54	-1.5
4,580,518	-		EFB2_04358	0.54	-1.4
4,580,518	-		EFB2_04358	0.54	-2.0
4,580,518	-		EFB2_04358	0.54	+0.2
4,580,518	-		EFB2_04358	0.54	-0.9
4,580,518	-		EFB2_04358	0.54	-0.4
4,580,518	-		EFB2_04358	0.54	-2.0
4,580,518	-		EFB2_04358	0.54	+3.2
4,580,588	+		EFB2_04358	0.59	+1.1
4,580,588	+		EFB2_04358	0.59	-0.6
4,580,589	-		EFB2_04358	0.59	-1.9
4,580,591	+		EFB2_04358	0.59	-0.8
4,580,591	+		EFB2_04358	0.59	-0.2
4,580,591	+		EFB2_04358	0.59	+0.3
4,580,591	+		EFB2_04358	0.59	-1.5
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