Strain Fitness in Escherichia fergusonii Becca around EFB2_04034

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,240,594	+				-1.0
4,240,617	-				-0.3
4,240,710	+				-1.1
4,240,710	+				+0.8
4,240,711	-				-0.8
4,240,711	-				-3.0
4,240,733	+				-0.9
4,240,733	+				+0.8
4,240,733	+				-2.3
4,240,733	+				-0.3
4,240,733	+				+2.6
4,240,734	-				-1.8
4,240,734	-				-0.2
4,240,736	+				+2.5
4,240,736	+				+0.4
4,240,736	+				+0.6
4,240,736	+				+0.5
4,240,736	+				+0.2
4,240,737	-				-3.2
4,240,737	-				+1.4
4,240,737	-				-1.9
4,240,757	+				-2.4
4,240,757	+				+0.0
4,240,757	+				+0.1
4,240,757	+				-1.1
4,240,757	+				+0.5
4,240,757	+				+0.6
4,240,757	+				+0.2
4,240,758	-				-2.1
4,240,758	-				-0.2
4,240,758	-				-0.4
4,240,758	-				-2.3
4,240,763	+				+1.7
4,240,763	+				-0.4
4,240,764	-				+0.5
4,240,776	+				-0.8
4,240,777	-				-2.3
4,240,813	+				-0.9
4,240,813	+				+1.3
4,240,813	+				+0.8
4,240,814	-				+0.9
4,240,825	+				-0.2
4,240,825	+				-0.5
4,240,825	+				-1.4
4,240,825	+				+1.4
4,240,825	+				-2.2
4,240,825	+				+1.2
4,240,825	+				+1.3
4,240,825	+				-1.6
4,240,826	-				+0.4
4,240,826	-				-0.5
4,240,826	-				+0.6
4,240,826	-				+1.8
4,240,826	-				+0.4
4,240,826	-				-0.3
4,240,826	-				+1.7
4,240,834	+				-1.1
4,240,905	-		EFB2_04033	0.16	-1.8
4,240,921	+		EFB2_04033	0.19	-2.2
4,240,921	+		EFB2_04033	0.19	-0.6
4,240,921	+		EFB2_04033	0.19	+0.1
4,240,921	+		EFB2_04033	0.19	-0.0
4,240,921	+		EFB2_04033	0.19	-1.2
4,240,922	-		EFB2_04033	0.19	+0.8
4,240,922	-		EFB2_04033	0.19	-0.9
4,240,924	+		EFB2_04033	0.19	-2.0
4,240,924	+		EFB2_04033	0.19	+1.7
4,240,924	+		EFB2_04033	0.19	-2.1
4,240,924	+		EFB2_04033	0.19	+0.7
4,240,924	+		EFB2_04033	0.19	+0.1
4,240,924	+		EFB2_04033	0.19	-0.4
4,240,924	+		EFB2_04033	0.19	+0.2
4,240,925	-		EFB2_04033	0.20	-1.7
4,240,925	-		EFB2_04033	0.20	-1.4
4,240,925	-		EFB2_04033	0.20	+1.6
4,240,925	-		EFB2_04033	0.20	+0.2
4,240,925	-		EFB2_04033	0.20	-2.2
4,240,925	-		EFB2_04033	0.20	-0.7
4,240,925	-		EFB2_04033	0.20	+1.0
4,240,925	-		EFB2_04033	0.20	+0.2
4,240,925	-		EFB2_04033	0.20	-1.8
4,240,925	-		EFB2_04033	0.20	+0.4
4,240,925	-		EFB2_04033	0.20	-2.2
4,240,925	-		EFB2_04033	0.20	+1.1
4,240,925	-		EFB2_04033	0.20	+0.4
4,240,986	-		EFB2_04033	0.30	-0.0
4,240,986	-		EFB2_04033	0.30	-1.7
4,240,986	-		EFB2_04033	0.30	-0.5
4,241,027	+		EFB2_04033	0.38	-0.9
4,241,027	+		EFB2_04033	0.38	-1.4
4,241,027	+		EFB2_04033	0.38	+2.0
4,241,027	+		EFB2_04033	0.38	-0.3
4,241,027	+		EFB2_04033	0.38	-2.5
4,241,028	-		EFB2_04033	0.38	-1.5
4,241,028	-		EFB2_04033	0.38	-0.8
4,241,028	-		EFB2_04033	0.38	+0.3
4,241,028	-		EFB2_04033	0.38	+2.5
4,241,028	-		EFB2_04033	0.38	+0.7
4,241,117	+		EFB2_04033	0.53	-1.5
4,241,117	+		EFB2_04033	0.53	-2.5
4,241,117	+		EFB2_04033	0.53	+0.1
4,241,117	+		EFB2_04033	0.53	+1.7
4,241,117	+		EFB2_04033	0.53	+1.3
4,241,117	+		EFB2_04033	0.53	-1.5
4,241,117	+		EFB2_04033	0.53	-0.9
4,241,118	-		EFB2_04033	0.54	-1.1
4,241,118	-		EFB2_04033	0.54	-1.7
4,241,118	-		EFB2_04033	0.54	-0.4
4,241,118	-		EFB2_04033	0.54	-0.3
4,241,118	-		EFB2_04033	0.54	+0.7
4,241,118	-		EFB2_04033	0.54	+2.4
4,241,118	-		EFB2_04033	0.54	-2.3
4,241,118	-		EFB2_04033	0.54	+0.1
4,241,118	-		EFB2_04033	0.54	-2.1
4,241,118	-		EFB2_04033	0.54	-0.7
4,241,118	-		EFB2_04033	0.54	+1.4
4,241,136	+		EFB2_04033	0.57	+0.6
4,241,136	+		EFB2_04033	0.57	+1.7
4,241,136	+		EFB2_04033	0.57	-0.1
4,241,136	+		EFB2_04033	0.57	-0.1
4,241,136	+		EFB2_04033	0.57	+0.9
4,241,136	+		EFB2_04033	0.57	+0.3
4,241,136	+		EFB2_04033	0.57	-3.0
4,241,136	+		EFB2_04033	0.57	+0.1
4,241,136	+		EFB2_04033	0.57	+0.4
4,241,136	+		EFB2_04033	0.57	+0.4
4,241,136	+		EFB2_04033	0.57	-1.9
4,241,137	-		EFB2_04033	0.57	+0.8
4,241,137	-		EFB2_04033	0.57	-2.0
4,241,137	-		EFB2_04033	0.57	+0.8
4,241,137	-		EFB2_04033	0.57	+2.0
4,241,137	-		EFB2_04033	0.57	-0.3
4,241,137	-		EFB2_04033	0.57	-1.8
4,241,137	-		EFB2_04033	0.57	+1.6
4,241,137	-		EFB2_04033	0.57	+0.1
4,241,137	-		EFB2_04033	0.57	+0.2
4,241,140	+		EFB2_04033	0.57	+1.2
4,241,140	+		EFB2_04033	0.57	+1.4
4,241,140	+		EFB2_04033	0.57	-0.6
4,241,140	+		EFB2_04033	0.57	+2.1
4,241,140	+		EFB2_04033	0.57	-1.6
4,241,140	+		EFB2_04033	0.57	-1.5
4,241,141	-		EFB2_04033	0.58	-3.0
4,241,141	-		EFB2_04033	0.58	+0.4
4,241,141	-		EFB2_04033	0.58	-0.6
4,241,141	-		EFB2_04033	0.58	-0.7
4,241,141	-		EFB2_04033	0.58	-0.6
4,241,141	-		EFB2_04033	0.58	+1.1
4,241,141	-		EFB2_04033	0.58	+0.1
4,241,141	-		EFB2_04033	0.58	-1.1
4,241,141	-		EFB2_04033	0.58	-0.3
4,241,149	+		EFB2_04033	0.59	+0.8
4,241,149	+		EFB2_04033	0.59	+1.3
4,241,149	+		EFB2_04033	0.59	-1.0
4,241,149	+		EFB2_04033	0.59	-0.0
4,241,149	+		EFB2_04033	0.59	-0.1
4,241,149	+		EFB2_04033	0.59	-2.4
4,241,149	+		EFB2_04033	0.59	+0.2
4,241,149	+		EFB2_04033	0.59	-2.1
4,241,149	+		EFB2_04033	0.59	+2.0
4,241,149	+		EFB2_04033	0.59	+0.9
4,241,149	+		EFB2_04033	0.59	-0.5
4,241,149	+		EFB2_04033	0.59	-1.5
4,241,149	+		EFB2_04033	0.59	+1.9
4,241,149	+		EFB2_04033	0.59	+0.8
4,241,150	-		EFB2_04033	0.59	+0.8
4,241,150	-		EFB2_04033	0.59	-0.3
4,241,150	-		EFB2_04033	0.59	+0.2
4,241,150	-		EFB2_04033	0.59	+0.5
4,241,150	-		EFB2_04033	0.59	-0.8
4,241,150	-		EFB2_04033	0.59	+0.8
4,241,150	-		EFB2_04033	0.59	-1.6
4,241,150	-		EFB2_04033	0.59	+0.2
4,241,150	-		EFB2_04033	0.59	-0.2
4,241,150	-		EFB2_04033	0.59	+0.6
4,241,150	-		EFB2_04033	0.59	-2.6
4,241,150	-		EFB2_04033	0.59	-1.4
4,241,150	-		EFB2_04033	0.59	-1.7
4,241,287	+		EFB2_04033	0.83	+0.0
4,241,287	+		EFB2_04033	0.83	-0.2
4,241,287	+		EFB2_04033	0.83	+0.4
4,241,287	+		EFB2_04033	0.83	-3.1
4,241,288	-		EFB2_04033	0.84	-1.5
4,241,288	-		EFB2_04033	0.84	-0.3
4,241,288	-		EFB2_04033	0.84	-0.6
4,241,309	+		EFB2_04033	0.87	-1.2
4,241,309	+		EFB2_04033	0.87	+1.0
4,241,309	+		EFB2_04033	0.87	-0.6
4,241,309	+		EFB2_04033	0.87	-1.3
4,241,309	+		EFB2_04033	0.87	-2.3
4,241,310	-		EFB2_04033	0.87	+0.6
4,241,310	-		EFB2_04033	0.87	-3.1
4,241,310	-		EFB2_04033	0.87	-3.2
4,241,310	-		EFB2_04033	0.87	-2.2
4,241,378	+				-0.9
4,241,379	-				+0.8
4,241,385	+				-0.6
4,241,385	+				-0.9
4,241,385	+				+0.8
4,241,386	-				-0.9
4,241,408	+				-0.4
4,241,408	+				+0.8
4,241,408	+				+3.7
4,241,408	+				+2.4
4,241,409	-				+2.8
4,241,409	-				+3.3
4,241,417	+				+0.1
4,241,418	-				-1.5
4,241,655	+		EFB2_04034	0.12	-1.9
4,241,655	+		EFB2_04034	0.12	-2.3
4,241,655	+		EFB2_04034	0.12	-0.4
4,241,655	+		EFB2_04034	0.12	+0.5
4,241,655	+		EFB2_04034	0.12	-1.6
4,241,655	+		EFB2_04034	0.12	-1.3
4,241,655	+		EFB2_04034	0.12	-3.0
4,241,656	-		EFB2_04034	0.12	+0.8
4,241,656	-		EFB2_04034	0.12	-0.5
4,241,656	-		EFB2_04034	0.12	+0.6
4,241,656	-		EFB2_04034	0.12	+1.0
4,241,656	-		EFB2_04034	0.12	-0.0
4,241,656	-		EFB2_04034	0.12	-1.6
4,241,656	-		EFB2_04034	0.12	-0.7
4,241,656	-		EFB2_04034	0.12	-1.1
4,241,656	-		EFB2_04034	0.12	+0.5
4,241,656	-		EFB2_04034	0.12	+0.1
4,241,656	-		EFB2_04034	0.12	-2.6
4,241,656	-		EFB2_04034	0.12	+0.6
4,241,656	-		EFB2_04034	0.12	+1.1
4,241,656	-		EFB2_04034	0.12	-1.2
4,241,656	-		EFB2_04034	0.12	+0.4
4,241,656	-		EFB2_04034	0.12	-1.6
4,241,682	+		EFB2_04034	0.16	+2.3
4,241,683	-		EFB2_04034	0.17	-0.1
4,241,683	-		EFB2_04034	0.17	-2.1
4,241,687	+		EFB2_04034	0.17	-0.1
4,241,687	+		EFB2_04034	0.17	+1.7
4,241,688	-		EFB2_04034	0.18	-0.5
4,241,701	+		EFB2_04034	0.20	+1.6
4,241,702	-		EFB2_04034	0.20	-0.3
4,241,719	+		EFB2_04034	0.23	+0.3
4,241,755	+		EFB2_04034	0.29	-1.5
4,241,755	+		EFB2_04034	0.29	-1.3
4,241,755	+		EFB2_04034	0.29	-1.6
4,241,755	+		EFB2_04034	0.29	+0.1
4,241,756	-		EFB2_04034	0.29	+0.8
4,241,756	-		EFB2_04034	0.29	-2.4
4,241,756	-		EFB2_04034	0.29	-2.7
4,241,756	-		EFB2_04034	0.29	+0.5
4,241,758	+		EFB2_04034	0.29	+0.4
4,241,758	+		EFB2_04034	0.29	+0.4
4,241,758	+		EFB2_04034	0.29	-1.0
4,241,758	+		EFB2_04034	0.29	+0.9
4,241,758	+		EFB2_04034	0.29	+0.6
4,241,758	+		EFB2_04034	0.29	-1.3
4,241,759	-		EFB2_04034	0.30	-2.2
4,241,759	-		EFB2_04034	0.30	+0.5
4,241,778	-		EFB2_04034	0.33	-0.0
4,241,778	-		EFB2_04034	0.33	+0.7
4,241,782	+		EFB2_04034	0.34	-1.1
4,241,782	+		EFB2_04034	0.34	+2.4
4,241,782	+		EFB2_04034	0.34	+0.2
4,241,782	+		EFB2_04034	0.34	-1.9
4,241,782	+		EFB2_04034	0.34	-0.8
4,241,783	-		EFB2_04034	0.34	-0.8
4,241,841	-		EFB2_04034	0.44	+0.8
4,241,924	+		EFB2_04034	0.58	+0.3
4,242,035	+		EFB2_04034	0.77	-0.8
4,242,114	+				+1.0
4,242,114	+				-1.8
4,242,149	+				+0.9
4,242,149	+				+0.8
4,242,149	+				-1.9
4,242,150	-				-2.1
4,242,150	-				+0.8
4,242,157	+				+1.4
4,242,157	+				+0.5
4,242,157	+				+0.8
4,242,157	+				+0.6
4,242,157	+				-2.5
4,242,157	+				+0.5
4,242,157	+				+0.1
4,242,157	+				+0.3
4,242,158	-				+3.0
4,242,158	-				-0.8
4,242,158	-				-0.3
4,242,158	-				+0.1
4,242,158	-				+1.0
4,242,158	-				-0.2
4,242,158	-				-1.0
4,242,161	+				+0.1
4,242,161	+				+1.8
4,242,161	+				+0.1
4,242,161	+				-1.1
4,242,162	-				-0.6
4,242,162	-				-2.9
4,242,162	-				-3.0
4,242,162	-				+0.8
4,242,162	-				-1.6
4,242,166	+				-0.9
4,242,166	+				+0.6
4,242,166	+				-0.3
4,242,166	+				+0.4
4,242,166	+				-2.1
4,242,166	+				-0.3
4,242,166	+				+1.5
4,242,166	+				-3.3
4,242,166	+				-0.2
4,242,166	+				-0.7
4,242,167	-				-1.4
4,242,167	-				+3.1
4,242,167	-				+0.7
4,242,167	-				+0.3
4,242,189	-				-0.1
4,242,189	-				-0.0
4,242,213	+				-3.3
4,242,213	+				-0.4
4,242,213	+				-0.1
4,242,213	+				-0.8
4,242,213	+				+0.3
4,242,213	+				+1.9
4,242,213	+				-0.0
4,242,214	-				+0.2
4,242,214	-				-0.7
4,242,214	-				+0.9
4,242,214	-				+1.5
4,242,214	-				+2.1
4,242,252	+				-1.5
4,242,252	+				-0.4
4,242,252	+				-0.3
4,242,252	+				+0.7
4,242,252	+				-1.2
4,242,252	+				-1.7
4,242,253	-				+2.2
4,242,253	-				-1.6
4,242,253	-				+1.8
4,242,278	+				-1.3
4,242,278	+				-0.3
4,242,278	+				-2.1
4,242,278	+				-1.4
4,242,278	+				+0.1
4,242,278	+				-0.8
4,242,278	+				-3.1
4,242,278	+				+1.8
4,242,278	+				+0.6
4,242,278	+				-0.9
4,242,279	-				+0.6
4,242,279	-				+1.7
4,242,279	-				-2.0
4,242,279	-				+0.4
4,242,279	-				+0.6
4,242,279	-				+0.9
4,242,279	-				+0.9
4,242,279	-				+1.1
4,242,282	+				-1.9
4,242,282	+				+1.9
4,242,282	+				+0.5
4,242,282	+				-1.3
4,242,282	+				+0.0
4,242,282	+				+0.4
4,242,282	+				+2.3
4,242,282	+				+0.8
4,242,283	-				+0.7
4,242,283	-				-0.3
4,242,283	-				+1.3
4,242,283	-				-0.5
4,242,283	-				+0.2
4,242,283	-				+0.4
4,242,283	-				-1.8
4,242,283	-				+0.5
4,242,283	-				+0.5
4,242,283	-				-1.4
4,242,283	-				+1.1
4,242,283	-				+0.6
4,242,288	+				+1.4
4,242,288	+				+0.0
4,242,288	+				+2.6
4,242,288	+				-2.1
4,242,288	+				-0.4
4,242,288	+				+1.1
4,242,288	+				-0.8
4,242,288	+				+1.0
4,242,288	+				-0.3
4,242,288	+				-1.5
4,242,288	+				+1.3
4,242,289	-				+0.8
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