Strain Fitness in Escherichia fergusonii Becca around EFB2_02828

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,968,500	+				-0.0
2,968,500	+				-1.3
2,968,500	+				+0.9
2,968,500	+				-0.1
2,968,500	+				+1.8
2,968,506	+				+1.1
2,968,536	-				-0.4
2,968,556	-				+4.6
2,968,559	-				+1.0
2,968,571	+				-0.2
2,968,572	-				-0.3
2,968,575	+				+1.6
2,968,575	+				+1.4
2,968,575	+				-0.5
2,968,575	+				+3.9
2,968,575	+				+0.1
2,968,575	+				-0.6
2,968,575	+				-2.0
2,968,575	+				-2.1
2,968,576	-				+0.0
2,968,576	-				+0.7
2,968,576	-				+2.6
2,968,576	-				+0.5
2,968,576	-				+1.5
2,968,576	-				-0.4
2,968,576	-				-1.2
2,968,576	-				-1.1
2,968,576	-				-1.3
2,968,576	-				-0.2
2,968,576	-				+3.0
2,968,576	-				+0.6
2,968,576	-				-0.9
2,968,583	+				+1.0
2,968,583	+				-1.4
2,968,583	+				-0.5
2,968,583	+				-0.7
2,968,583	+				-1.2
2,968,583	+				+0.4
2,968,583	+				-1.3
2,968,583	+				-2.1
2,968,583	+				+1.2
2,968,583	+				-1.3
2,968,583	+				+1.0
2,968,583	+				-0.8
2,968,583	+				-1.3
2,968,584	-				+1.4
2,968,584	-				-1.3
2,968,584	-				-0.7
2,968,584	-				-2.3
2,968,584	-				+0.2
2,968,584	-				-1.1
2,968,584	-				-2.1
2,968,584	-				+0.5
2,968,585	+				+2.3
2,968,585	+				-2.4
2,968,585	+				-1.7
2,968,585	+				-0.5
2,968,585	+				-0.4
2,968,585	+				+2.9
2,968,585	+				-1.1
2,968,585	+				+2.1
2,968,585	+				+0.4
2,968,585	+				+1.5
2,968,585	+				+1.4
2,968,585	+				+0.9
2,968,585	+				-1.8
2,968,586	-				+0.6
2,968,586	-				-1.6
2,968,586	-				-1.2
2,968,586	-				+3.4
2,968,586	-				+4.4
2,968,586	-				+1.8
2,968,586	-				+1.5
2,968,586	-				+2.5
2,968,586	-				-1.5
2,968,586	-				+0.0
2,968,586	-				-0.7
2,968,586	-				+3.3
2,968,586	-				+1.0
2,968,586	-				+2.6
2,968,586	-				+1.5
2,968,588	-				+1.4
2,968,640	+				+3.1
2,968,641	-				-0.2
2,968,655	+				-2.7
2,968,667	+				-2.7
2,968,673	+				+0.3
2,968,673	+				+0.1
2,968,674	-				-1.0
2,968,779	+		EFB2_02826	0.61	-1.1
2,968,779	+		EFB2_02826	0.61	-0.7
2,968,787	+		EFB2_02826	0.65	+3.6
2,968,787	+		EFB2_02826	0.65	+0.5
2,968,787	+		EFB2_02826	0.65	+2.2
2,968,787	+		EFB2_02826	0.65	-0.5
2,968,788	-		EFB2_02826	0.66	-1.3
2,968,798	+		EFB2_02826	0.71	+0.0
2,968,798	+		EFB2_02826	0.71	+0.1
2,968,832	+		EFB2_02826	0.88	-1.3
2,968,833	-		EFB2_02826	0.88	-0.8
2,968,867	+				-1.2
2,968,882	+				-0.7
2,968,883	-				+1.6
2,968,891	-				+1.6
2,968,947	+				-2.3
2,968,947	+				-1.7
2,968,952	-				+0.9
2,968,952	-				-1.4
2,969,022	+				+0.0
2,969,022	+				-1.6
2,969,022	+				+0.5
2,969,023	-				+1.9
2,969,023	-				-0.0
2,969,031	-				-1.6
2,969,036	+				+0.7
2,969,036	+				+2.6
2,969,036	+				-1.0
2,969,036	+				-2.3
2,969,036	+				+0.9
2,969,037	-				-0.8
2,969,037	-				+3.2
2,969,037	-				-1.3
2,969,037	-				-2.2
2,969,037	-				-0.8
2,969,037	-				-1.8
2,969,037	-				-0.8
2,969,070	-				-0.2
2,969,113	-		EFB2_02827	0.20	+2.6
2,969,144	-		EFB2_02827	0.28	-0.8
2,969,176	+		EFB2_02827	0.37	-2.3
2,969,190	+		EFB2_02827	0.41	-1.4
2,969,191	-		EFB2_02827	0.41	+0.9
2,969,203	-		EFB2_02827	0.44	-2.2
2,969,205	+		EFB2_02827	0.45	-1.6
2,969,205	+		EFB2_02827	0.45	+0.6
2,969,206	-		EFB2_02827	0.45	+1.4
2,969,234	-		EFB2_02827	0.53	-1.4
2,969,236	-		EFB2_02827	0.53	-0.3
2,969,261	+		EFB2_02827	0.60	+0.3
2,969,261	+		EFB2_02827	0.60	-0.5
2,969,262	-		EFB2_02827	0.60	-1.0
2,969,262	-		EFB2_02827	0.60	-0.2
2,969,262	-		EFB2_02827	0.60	-0.5
2,969,262	-		EFB2_02827	0.60	-1.1
2,969,329	+		EFB2_02827	0.79	+0.8
2,969,329	+		EFB2_02827	0.79	+1.4
2,969,348	-		EFB2_02827	0.84	-1.9
2,969,359	+		EFB2_02827	0.87	+0.8
2,969,359	+		EFB2_02827	0.87	-1.2
2,969,359	+		EFB2_02827	0.87	-0.4
2,969,359	+		EFB2_02827	0.87	+0.1
2,969,359	+		EFB2_02827	0.87	+0.3
2,969,359	+		EFB2_02827	0.87	+3.4
2,969,360	-		EFB2_02827	0.87	+0.7
2,969,386	+				+1.8
2,969,386	+				+0.8
2,969,386	+				+0.7
2,969,386	+				+1.6
2,969,387	-				-1.1
2,969,387	-				+3.3
2,969,387	-				-1.5
2,969,387	-				+0.7
2,969,387	-				+1.5
2,969,392	+				-2.0
2,969,392	+				+0.9
2,969,431	+				-2.3
2,969,431	+				+0.7
2,969,432	-				-1.8
2,969,457	+				+1.2
2,969,461	+				-2.3
2,969,461	+				-1.1
2,969,461	+				+1.0
2,969,461	+				+1.9
2,969,461	+				-0.5
2,969,461	+				-0.4
2,969,461	+				+0.0
2,969,461	+				+1.8
2,969,462	-				-1.1
2,969,462	-				+1.3
2,969,462	-				+3.2
2,969,463	+				+0.1
2,969,463	+				-0.5
2,969,464	-				+0.3
2,969,487	-				+1.4
2,969,487	-				-0.2
2,969,586	+		EFB2_02828	0.64	-3.1
2,969,586	+		EFB2_02828	0.64	+0.3
2,969,587	-		EFB2_02828	0.65	+2.6
2,969,587	-		EFB2_02828	0.65	-0.7
2,969,587	-		EFB2_02828	0.65	-1.2
2,969,587	-		EFB2_02828	0.65	+0.6
2,969,587	-		EFB2_02828	0.65	-0.2
2,969,590	+		EFB2_02828	0.67	-1.8
2,969,590	+		EFB2_02828	0.67	+0.6
2,969,591	-		EFB2_02828	0.67	-2.2
2,969,591	-		EFB2_02828	0.67	-2.4
2,969,627	+				-1.0
2,969,627	+				-0.4
2,969,628	-				+1.4
2,969,705	+		EFB2_02829	0.64	+0.0
2,969,719	+		EFB2_02829	0.74	+0.3
2,969,719	+		EFB2_02829	0.74	+0.9
2,969,720	-		EFB2_02829	0.74	-1.4
2,969,723	-		EFB2_02829	0.76	+1.4
2,969,841	+				-0.3
2,969,842	-				+0.6
2,969,842	-				-1.9
2,969,844	+				-1.7
2,969,844	+				+0.2
2,969,844	+				+0.3
2,969,844	+				+0.7
2,969,844	+				+0.3
2,969,844	+				+1.0
2,969,844	+				-1.7
2,969,844	+				+2.1
2,969,845	-				-2.1
2,969,845	-				+2.0
2,969,845	-				-1.4
2,969,886	+		EFB2_02830	0.18	-1.4
2,969,887	-		EFB2_02830	0.19	-0.2
2,969,887	-		EFB2_02830	0.19	+3.0
2,969,971	+		EFB2_02830	0.47	-2.6
2,969,971	+		EFB2_02830	0.47	-0.8
2,969,971	+		EFB2_02830	0.47	+0.7
2,969,972	-		EFB2_02830	0.47	-1.1
2,969,986	+		EFB2_02830	0.52	+2.0
2,969,986	+		EFB2_02830	0.52	+0.5
2,969,986	+		EFB2_02830	0.52	-1.3
2,969,986	+		EFB2_02830	0.52	+2.0
2,969,987	-		EFB2_02830	0.52	-0.4
2,969,987	-		EFB2_02830	0.52	+0.4
2,969,987	-		EFB2_02830	0.52	+2.1
2,969,987	-		EFB2_02830	0.52	-1.9
2,969,987	-		EFB2_02830	0.52	-0.8
2,969,987	-		EFB2_02830	0.52	+2.6
2,969,987	-		EFB2_02830	0.52	-1.6
2,970,075	+		EFB2_02830	0.82	-0.9
2,970,075	+		EFB2_02830	0.82	+0.2
2,970,075	+		EFB2_02830	0.82	-0.9
2,970,075	+		EFB2_02830	0.82	-0.7
2,970,075	+		EFB2_02830	0.82	+1.7
2,970,076	-		EFB2_02830	0.82	-0.7
2,970,076	-		EFB2_02830	0.82	+0.6
2,970,079	+		EFB2_02830	0.83	+1.5
2,970,079	+		EFB2_02830	0.83	-2.3
2,970,079	+		EFB2_02830	0.83	-2.1
2,970,079	+		EFB2_02830	0.83	-0.2
2,970,079	+		EFB2_02830	0.83	-1.0
2,970,079	+		EFB2_02830	0.83	-1.5
2,970,079	+		EFB2_02830	0.83	-1.1
2,970,079	+		EFB2_02830	0.83	-2.3
2,970,079	+		EFB2_02830	0.83	+0.4
2,970,079	+		EFB2_02830	0.83	+1.5
2,970,079	+		EFB2_02830	0.83	-1.0
2,970,079	+		EFB2_02830	0.83	+0.3
2,970,079	+		EFB2_02830	0.83	+1.0
2,970,079	+		EFB2_02830	0.83	-0.4
2,970,079	+		EFB2_02830	0.83	+1.8
2,970,079	+		EFB2_02830	0.83	-0.7
2,970,079	+		EFB2_02830	0.83	+0.6
2,970,079	+		EFB2_02830	0.83	+0.9
2,970,079	+		EFB2_02830	0.83	-0.2
2,970,079	+		EFB2_02830	0.83	+0.5
2,970,079	+		EFB2_02830	0.83	-1.4
2,970,079	+		EFB2_02830	0.83	-2.1
2,970,079	+		EFB2_02830	0.83	+0.0
2,970,079	+		EFB2_02830	0.83	-2.0
2,970,079	+		EFB2_02830	0.83	+0.1
2,970,079	+		EFB2_02830	0.83	+0.9
2,970,079	+		EFB2_02830	0.83	-0.1
2,970,079	+		EFB2_02830	0.83	+0.5
2,970,079	+		EFB2_02830	0.83	-2.6
2,970,080	-		EFB2_02830	0.84	+2.2
2,970,080	-		EFB2_02830	0.84	-0.5
2,970,080	-		EFB2_02830	0.84	-0.5
2,970,080	-		EFB2_02830	0.84	-0.8
2,970,080	-		EFB2_02830	0.84	-0.4
2,970,080	-		EFB2_02830	0.84	-1.3
2,970,080	-		EFB2_02830	0.84	+1.0
2,970,080	-		EFB2_02830	0.84	-1.4
2,970,080	-		EFB2_02830	0.84	+1.6
2,970,080	-		EFB2_02830	0.84	-0.2
2,970,080	-		EFB2_02830	0.84	-1.5
2,970,080	-		EFB2_02830	0.84	-1.0
2,970,080	-		EFB2_02830	0.84	-2.8
2,970,080	-		EFB2_02830	0.84	+0.1
2,970,080	-		EFB2_02830	0.84	+2.6
2,970,110	+				-2.3
2,970,124	+				+2.3
2,970,124	+				+0.1
2,970,124	+				+0.6
2,970,124	+				-0.2
2,970,126	+				-0.2
2,970,126	+				+3.6
2,970,126	+				-1.1
2,970,126	+				+0.3
2,970,126	+				-0.0
2,970,126	+				-1.5
2,970,126	+				+3.6
2,970,127	-				-1.1
2,970,127	-				-2.8
2,970,127	-				+1.4
2,970,127	-				-0.2
2,970,139	+				-2.5
2,970,139	+				+1.3
2,970,139	+				-0.1
2,970,139	+				+0.0
2,970,139	+				-0.6
2,970,140	-				-1.1
2,970,140	-				+1.4
2,970,140	-				+0.3
2,970,140	-				+0.0
2,970,140	-				-2.0
2,970,238	+		EFB2_02831	0.13	+0.2
2,970,238	+		EFB2_02831	0.13	+1.3
2,970,238	+		EFB2_02831	0.13	-1.5
2,970,238	+		EFB2_02831	0.13	-0.7
2,970,238	+		EFB2_02831	0.13	+0.2
2,970,238	+		EFB2_02831	0.13	+1.0
2,970,238	+		EFB2_02831	0.13	+1.8
2,970,238	+		EFB2_02831	0.13	-0.1
2,970,238	+		EFB2_02831	0.13	-1.1
2,970,239	-		EFB2_02831	0.13	-1.2
2,970,239	-		EFB2_02831	0.13	-1.1
2,970,239	-		EFB2_02831	0.13	-0.7
2,970,239	-		EFB2_02831	0.13	+2.4
2,970,294	-		EFB2_02831	0.20	-0.4
2,970,301	+		EFB2_02831	0.21	+0.8
2,970,415	+		EFB2_02831	0.36	-2.5
2,970,416	-		EFB2_02831	0.36	+0.6
2,970,445	+		EFB2_02831	0.40	+2.1
2,970,445	+		EFB2_02831	0.40	-0.7
2,970,445	+		EFB2_02831	0.40	-2.9
2,970,445	+		EFB2_02831	0.40	+0.2
2,970,445	+		EFB2_02831	0.40	-1.1
2,970,445	+		EFB2_02831	0.40	+0.0
2,970,445	+		EFB2_02831	0.40	-2.1
2,970,445	+		EFB2_02831	0.40	-2.2
2,970,445	+		EFB2_02831	0.40	-1.7
2,970,445	+		EFB2_02831	0.40	-0.5
2,970,445	+		EFB2_02831	0.40	+1.0
2,970,445	+		EFB2_02831	0.40	-1.4
2,970,445	+		EFB2_02831	0.40	-2.5
2,970,445	+		EFB2_02831	0.40	-0.6
2,970,445	+		EFB2_02831	0.40	+1.2
2,970,445	+		EFB2_02831	0.40	-2.7
2,970,445	+		EFB2_02831	0.40	-1.5
2,970,445	+		EFB2_02831	0.40	+1.6
2,970,445	+		EFB2_02831	0.40	-1.3
2,970,445	+		EFB2_02831	0.40	+2.6
2,970,445	+		EFB2_02831	0.40	-2.1
2,970,446	-		EFB2_02831	0.40	+1.4
2,970,446	-		EFB2_02831	0.40	+4.2
2,970,446	-		EFB2_02831	0.40	+0.3
2,970,446	-		EFB2_02831	0.40	-0.8
2,970,446	-		EFB2_02831	0.40	-2.2
2,970,446	-		EFB2_02831	0.40	-1.3
2,970,446	-		EFB2_02831	0.40	-1.8
2,970,446	-		EFB2_02831	0.40	+0.5
2,970,446	-		EFB2_02831	0.40	+0.0
2,970,446	-		EFB2_02831	0.40	-0.1
2,970,446	-		EFB2_02831	0.40	+0.6
2,970,446	-		EFB2_02831	0.40	-1.2
2,970,446	-		EFB2_02831	0.40	+2.6
2,970,446	-		EFB2_02831	0.40	+1.2
2,970,446	-		EFB2_02831	0.40	-1.1
2,970,586	-		EFB2_02831	0.58	-2.1
2,970,592	+		EFB2_02831	0.58	-0.7
2,970,592	+		EFB2_02831	0.58	+0.7
2,970,593	-		EFB2_02831	0.58	-0.1
2,970,593	-		EFB2_02831	0.58	-0.0
2,970,593	-		EFB2_02831	0.58	+1.3
2,970,637	+		EFB2_02831	0.64	-2.2
2,970,637	+		EFB2_02831	0.64	+0.0
2,970,637	+		EFB2_02831	0.64	-1.2
2,970,638	-		EFB2_02831	0.64	-1.3
2,970,638	-		EFB2_02831	0.64	-0.8
2,970,638	-		EFB2_02831	0.64	+1.0
2,970,638	-		EFB2_02831	0.64	-1.1
2,970,638	-		EFB2_02831	0.64	+1.5
2,970,638	-		EFB2_02831	0.64	+2.1
2,970,638	-		EFB2_02831	0.64	-1.8
2,970,641	+		EFB2_02831	0.65	-0.0
2,970,641	+		EFB2_02831	0.65	+1.2
2,970,641	+		EFB2_02831	0.65	+0.6
2,970,641	+		EFB2_02831	0.65	-0.3
2,970,641	+		EFB2_02831	0.65	-0.9
2,970,641	+		EFB2_02831	0.65	+1.0
2,970,641	+		EFB2_02831	0.65	+0.4
2,970,641	+		EFB2_02831	0.65	+1.3
2,970,641	+		EFB2_02831	0.65	+2.6
2,970,641	+		EFB2_02831	0.65	-1.6
2,970,641	+		EFB2_02831	0.65	+1.6
2,970,641	+		EFB2_02831	0.65	+0.3
2,970,642	-		EFB2_02831	0.65	+0.5
2,970,642	-		EFB2_02831	0.65	-1.0
2,970,642	-		EFB2_02831	0.65	-1.4
2,970,642	-		EFB2_02831	0.65	-1.5
2,970,642	-		EFB2_02831	0.65	-0.5
2,970,642	-		EFB2_02831	0.65	+0.7
2,970,642	-		EFB2_02831	0.65	-0.8