Strain Fitness in Escherichia fergusonii Becca around EFB2_02517

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,646,486	-				-0.8
2,646,508	-				-0.2
2,646,508	-				-2.3
2,646,508	-				-0.5
2,646,663	-				+1.5
2,646,700	-				+0.2
2,646,760	+		EFB2_02515	0.23	-1.6
2,646,760	+		EFB2_02515	0.23	+1.6
2,646,762	+		EFB2_02515	0.24	-1.1
2,646,762	+		EFB2_02515	0.24	-0.9
2,646,762	+		EFB2_02515	0.24	-1.4
2,646,783	+		EFB2_02515	0.32	+0.2
2,646,783	+		EFB2_02515	0.32	-0.4
2,646,835	+		EFB2_02515	0.50	-0.5
2,646,835	+		EFB2_02515	0.50	+1.4
2,646,852	+		EFB2_02515	0.56	+0.5
2,646,852	+		EFB2_02515	0.56	+0.5
2,646,852	+		EFB2_02515	0.56	-3.0
2,646,852	+		EFB2_02515	0.56	+1.2
2,646,861	+		EFB2_02515	0.59	+0.4
2,646,944	+		EFB2_02515	0.89	-2.7
2,646,944	+		EFB2_02515	0.89	-1.7
2,646,944	+		EFB2_02515	0.89	+0.9
2,646,944	+		EFB2_02515	0.89	+0.2
2,646,944	+		EFB2_02515	0.89	+1.2
2,646,944	+		EFB2_02515	0.89	+0.2
2,646,944	+		EFB2_02515	0.89	-1.8
2,646,944	+		EFB2_02515	0.89	+2.3
2,646,944	+		EFB2_02515	0.89	+0.7
2,646,944	+		EFB2_02515	0.89	-1.2
2,646,944	+		EFB2_02515	0.89	+0.6
2,646,944	+		EFB2_02515	0.89	+0.5
2,646,944	+		EFB2_02515	0.89	-2.3
2,646,944	+		EFB2_02515	0.89	+1.4
2,646,944	+		EFB2_02515	0.89	-1.8
2,646,944	+		EFB2_02515	0.89	-1.0
2,646,944	+		EFB2_02515	0.89	+0.5
2,646,944	+		EFB2_02515	0.89	+0.3
2,646,944	+		EFB2_02515	0.89	-2.4
2,646,944	+		EFB2_02515	0.89	+0.2
2,646,944	+		EFB2_02515	0.89	+1.6
2,646,944	+		EFB2_02515	0.89	+0.8
2,646,944	+		EFB2_02515	0.89	+0.9
2,646,944	+		EFB2_02515	0.89	-0.7
2,646,944	+		EFB2_02515	0.89	+0.2
2,646,944	+		EFB2_02515	0.89	-1.2
2,646,944	+		EFB2_02515	0.89	-0.5
2,646,944	+		EFB2_02515	0.89	+0.8
2,646,944	+		EFB2_02515	0.89	-2.6
2,646,944	+		EFB2_02515	0.89	+0.2
2,646,944	+		EFB2_02515	0.89	-2.2
2,646,944	+		EFB2_02515	0.89	+3.2
2,646,944	+		EFB2_02515	0.89	-0.7
2,646,944	+		EFB2_02515	0.89	-1.0
2,646,944	+		EFB2_02515	0.89	-0.8
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	+0.3
2,646,944	+		EFB2_02515	0.89	+1.7
2,646,944	+		EFB2_02515	0.89	-0.5
2,646,944	+		EFB2_02515	0.89	+2.6
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	-2.9
2,646,944	+		EFB2_02515	0.89	+1.4
2,646,944	+		EFB2_02515	0.89	-1.5
2,646,944	+		EFB2_02515	0.89	-2.1
2,646,944	+		EFB2_02515	0.89	+0.5
2,646,944	+		EFB2_02515	0.89	+0.5
2,646,944	+		EFB2_02515	0.89	-0.5
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	+1.2
2,646,944	+		EFB2_02515	0.89	-2.3
2,646,944	+		EFB2_02515	0.89	-2.2
2,646,944	+		EFB2_02515	0.89	+0.5
2,646,944	+		EFB2_02515	0.89	-1.0
2,646,944	+		EFB2_02515	0.89	-0.0
2,646,944	+		EFB2_02515	0.89	-0.8
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	-0.5
2,646,944	+		EFB2_02515	0.89	+1.0
2,646,944	+		EFB2_02515	0.89	-0.9
2,646,945	-		EFB2_02515	0.90	-1.0
2,646,945	-		EFB2_02515	0.90	-0.0
2,646,945	-		EFB2_02515	0.90	+0.4
2,646,945	-		EFB2_02515	0.90	-1.2
2,646,945	-		EFB2_02515	0.90	+3.3
2,646,945	-		EFB2_02515	0.90	-0.2
2,646,945	-		EFB2_02515	0.90	+0.6
2,646,945	-		EFB2_02515	0.90	-0.9
2,646,945	-		EFB2_02515	0.90	-0.0
2,646,945	-		EFB2_02515	0.90	-2.4
2,646,945	-		EFB2_02515	0.90	-1.0
2,646,945	-		EFB2_02515	0.90	-1.8
2,646,945	-		EFB2_02515	0.90	-0.5
2,646,945	-		EFB2_02515	0.90	+2.1
2,646,945	-		EFB2_02515	0.90	-0.8
2,646,945	-		EFB2_02515	0.90	-0.0
2,646,948	+				-1.0
2,646,948	+				+1.0
2,646,948	+				+1.6
2,646,948	+				+2.2
2,646,956	+				-1.7
2,646,956	+				+5.4
2,646,957	-				+2.8
2,646,965	+				+1.2
2,646,965	+				-0.6
2,646,965	+				-0.0
2,646,965	+				-0.7
2,646,965	+				-1.4
2,647,271	+				-1.0
2,647,271	+				-0.5
2,647,271	+				-1.1
2,647,271	+				+0.7
2,647,272	-				-0.2
2,647,272	-				+0.9
2,647,274	-				-1.4
2,647,428	+				+4.1
2,647,428	+				-0.1
2,647,428	+				-0.2
2,647,428	+				+1.2
2,647,429	-				+1.2
2,647,429	-				-0.7
2,647,429	-				-0.9
2,647,429	-				+1.8
2,647,451	+				+1.0
2,647,451	+				+0.2
2,647,471	-				-2.4
2,647,487	+				-1.5
2,647,487	+				-2.3
2,647,487	+				-1.4
2,647,487	+				+1.2
2,647,487	+				-1.4
2,647,487	+				-0.3
2,647,488	-				-0.7
2,647,488	-				+0.2
2,647,488	-				+0.1
2,647,488	-				-2.2
2,647,488	-				+1.1
2,647,488	-				+0.8
2,647,488	-				-1.4
2,647,488	-				+2.5
2,647,488	-				-0.5
2,647,489	+				+2.5
2,647,489	+				-0.0
2,647,490	-				+0.3
2,647,490	-				+1.0
2,647,599	+		EFB2_02517	0.17	+5.8
2,647,626	+		EFB2_02517	0.21	-2.0
2,647,627	-		EFB2_02517	0.22	-0.3
2,647,627	-		EFB2_02517	0.22	+1.1
2,647,627	-		EFB2_02517	0.22	-1.8
2,647,627	-		EFB2_02517	0.22	-0.4
2,647,627	-		EFB2_02517	0.22	-0.7
2,647,628	+		EFB2_02517	0.22	+0.8
2,647,628	+		EFB2_02517	0.22	-0.8
2,647,628	+		EFB2_02517	0.22	+1.8
2,647,628	+		EFB2_02517	0.22	-1.5
2,647,628	+		EFB2_02517	0.22	+0.2
2,647,628	+		EFB2_02517	0.22	-2.3
2,647,628	+		EFB2_02517	0.22	-1.1
2,647,628	+		EFB2_02517	0.22	+1.5
2,647,628	+		EFB2_02517	0.22	+0.1
2,647,628	+		EFB2_02517	0.22	+0.5
2,647,628	+		EFB2_02517	0.22	-0.5
2,647,628	+		EFB2_02517	0.22	-0.8
2,647,628	+		EFB2_02517	0.22	-0.7
2,647,628	+		EFB2_02517	0.22	+0.5
2,647,628	+		EFB2_02517	0.22	+0.6
2,647,628	+		EFB2_02517	0.22	+0.8
2,647,628	+		EFB2_02517	0.22	+0.6
2,647,628	+		EFB2_02517	0.22	+0.5
2,647,628	+		EFB2_02517	0.22	+0.2
2,647,628	+		EFB2_02517	0.22	-0.5
2,647,628	+		EFB2_02517	0.22	-0.4
2,647,628	+		EFB2_02517	0.22	-0.4
2,647,628	+		EFB2_02517	0.22	+0.3
2,647,628	+		EFB2_02517	0.22	+3.5
2,647,628	+		EFB2_02517	0.22	+1.0
2,647,628	+		EFB2_02517	0.22	-0.7
2,647,628	+		EFB2_02517	0.22	+3.4
2,647,628	+		EFB2_02517	0.22	+1.0
2,647,628	+		EFB2_02517	0.22	+0.5
2,647,628	+		EFB2_02517	0.22	+0.2
2,647,628	+		EFB2_02517	0.22	-0.8
2,647,628	+		EFB2_02517	0.22	-0.7
2,647,628	+		EFB2_02517	0.22	+1.8
2,647,628	+		EFB2_02517	0.22	+1.2
2,647,628	+		EFB2_02517	0.22	+3.1
2,647,628	+		EFB2_02517	0.22	-0.0
2,647,628	+		EFB2_02517	0.22	-0.0
2,647,628	+		EFB2_02517	0.22	+1.2
2,647,628	+		EFB2_02517	0.22	-0.7
2,647,628	+		EFB2_02517	0.22	+0.6
2,647,628	+		EFB2_02517	0.22	+1.1
2,647,628	+		EFB2_02517	0.22	-0.0
2,647,628	+		EFB2_02517	0.22	-1.4
2,647,628	+		EFB2_02517	0.22	+1.2
2,647,628	+		EFB2_02517	0.22	+2.0
2,647,628	+		EFB2_02517	0.22	-1.1
2,647,628	+		EFB2_02517	0.22	+0.5
2,647,628	+		EFB2_02517	0.22	-0.0
2,647,628	+		EFB2_02517	0.22	-1.8
2,647,628	+		EFB2_02517	0.22	+0.9
2,647,628	+		EFB2_02517	0.22	-0.4
2,647,628	+		EFB2_02517	0.22	+0.5
2,647,628	+		EFB2_02517	0.22	+3.1
2,647,628	+		EFB2_02517	0.22	+0.7
2,647,628	+		EFB2_02517	0.22	+0.7
2,647,628	+		EFB2_02517	0.22	+0.4
2,647,628	+		EFB2_02517	0.22	-1.8
2,647,628	+		EFB2_02517	0.22	+0.2
2,647,629	-		EFB2_02517	0.22	-0.5
2,647,629	-		EFB2_02517	0.22	-1.1
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	+0.3
2,647,629	-		EFB2_02517	0.22	+1.0
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	-1.5
2,647,629	-		EFB2_02517	0.22	+0.4
2,647,629	-		EFB2_02517	0.22	+0.6
2,647,629	-		EFB2_02517	0.22	-0.8
2,647,629	-		EFB2_02517	0.22	+0.9
2,647,629	-		EFB2_02517	0.22	+1.2
2,647,629	-		EFB2_02517	0.22	+0.2
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	+0.4
2,647,629	-		EFB2_02517	0.22	+1.2
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	+0.8
2,647,629	-		EFB2_02517	0.22	-2.2
2,647,629	-		EFB2_02517	0.22	-0.2
2,647,629	-		EFB2_02517	0.22	-1.8
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	+2.0
2,647,629	-		EFB2_02517	0.22	-1.0
2,647,629	-		EFB2_02517	0.22	-0.3
2,647,629	-		EFB2_02517	0.22	+0.2
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	-0.2
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	-3.1
2,647,629	-		EFB2_02517	0.22	+0.4
2,647,629	-		EFB2_02517	0.22	+0.5
2,647,629	-		EFB2_02517	0.22	-0.7
2,647,629	-		EFB2_02517	0.22	+0.2
2,647,629	-		EFB2_02517	0.22	-1.1
2,647,629	-		EFB2_02517	0.22	+1.3
2,647,629	-		EFB2_02517	0.22	+2.0
2,647,629	-		EFB2_02517	0.22	-1.8
2,647,629	-		EFB2_02517	0.22	-0.1
2,647,629	-		EFB2_02517	0.22	+1.3
2,647,629	-		EFB2_02517	0.22	-1.8
2,647,629	-		EFB2_02517	0.22	-1.0
2,647,629	-		EFB2_02517	0.22	+2.2
2,647,629	-		EFB2_02517	0.22	-1.0
2,647,629	-		EFB2_02517	0.22	+2.2
2,647,629	-		EFB2_02517	0.22	-0.8
2,647,629	-		EFB2_02517	0.22	+1.1
2,647,629	-		EFB2_02517	0.22	+1.0
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	+0.8
2,647,629	-		EFB2_02517	0.22	-1.5
2,647,629	-		EFB2_02517	0.22	+0.5
2,647,629	-		EFB2_02517	0.22	-0.7
2,647,629	-		EFB2_02517	0.22	+3.6
2,647,629	-		EFB2_02517	0.22	+1.2
2,647,629	-		EFB2_02517	0.22	-1.5
2,647,629	-		EFB2_02517	0.22	+1.0
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	+0.4
2,647,629	-		EFB2_02517	0.22	+2.8
2,647,629	-		EFB2_02517	0.22	-0.8
2,647,629	-		EFB2_02517	0.22	-0.6
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	+0.4
2,647,629	-		EFB2_02517	0.22	-1.6
2,647,629	-		EFB2_02517	0.22	-1.3
2,647,629	-		EFB2_02517	0.22	-1.0
2,647,629	-		EFB2_02517	0.22	-1.6
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	+2.0
2,647,629	-		EFB2_02517	0.22	+0.8
2,647,629	-		EFB2_02517	0.22	+1.2
2,647,629	-		EFB2_02517	0.22	-0.2
2,647,629	-		EFB2_02517	0.22	+0.8
2,647,629	-		EFB2_02517	0.22	-1.3
2,647,629	-		EFB2_02517	0.22	+2.1
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	+0.4
2,647,629	-		EFB2_02517	0.22	+1.4
2,647,629	-		EFB2_02517	0.22	+1.4
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	+1.0
2,647,629	-		EFB2_02517	0.22	-2.1
2,647,632	+		EFB2_02517	0.22	+0.1
2,647,632	+		EFB2_02517	0.22	-1.5
2,647,632	+		EFB2_02517	0.22	+0.3
2,647,632	+		EFB2_02517	0.22	-0.5
2,647,632	+		EFB2_02517	0.22	-0.1
2,647,632	+		EFB2_02517	0.22	-0.2
2,647,632	+		EFB2_02517	0.22	+1.8
2,647,632	+		EFB2_02517	0.22	-1.8
2,647,632	+		EFB2_02517	0.22	-1.4
2,647,632	+		EFB2_02517	0.22	-1.4
2,647,632	+		EFB2_02517	0.22	+3.2
2,647,632	+		EFB2_02517	0.22	+1.7
2,647,632	+		EFB2_02517	0.22	-0.2
2,647,632	+		EFB2_02517	0.22	+2.8
2,647,632	+		EFB2_02517	0.22	-0.4
2,647,632	+		EFB2_02517	0.22	+1.2
2,647,632	+		EFB2_02517	0.22	-0.0
2,647,632	+		EFB2_02517	0.22	+3.6
2,647,632	+		EFB2_02517	0.22	-0.5
2,647,632	+		EFB2_02517	0.22	-0.4
2,647,632	+		EFB2_02517	0.22	+2.8
2,647,633	-		EFB2_02517	0.22	-0.4
2,647,633	-		EFB2_02517	0.22	-2.3
2,647,633	-		EFB2_02517	0.22	-0.5
2,647,633	-		EFB2_02517	0.22	+1.1
2,647,633	-		EFB2_02517	0.22	-1.3
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