Strain Fitness in Escherichia fergusonii Becca around EFB2_02281

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,416,013	+				+1.9
2,416,013	+				+1.5
2,416,013	+				+1.3
2,416,013	+				-0.5
2,416,013	+				-0.4
2,416,014	-				-0.6
2,416,014	-				+2.3
2,416,014	-				-0.2
2,416,014	-				+0.6
2,416,014	-				-1.5
2,416,014	-				-0.4
2,416,014	-				-0.9
2,416,014	-				+0.5
2,416,014	-				-0.0
2,416,014	-				+0.2
2,416,049	+				-1.1
2,416,049	+				-1.0
2,416,049	+				-1.0
2,416,050	-				+1.1
2,416,050	-				-2.2
2,416,050	-				-2.0
2,416,050	-				+3.0
2,416,140	+		EFB2_02280	0.18	+0.9
2,416,140	+		EFB2_02280	0.18	+0.8
2,416,140	+		EFB2_02280	0.18	-1.1
2,416,141	-		EFB2_02280	0.18	+1.0
2,416,141	-		EFB2_02280	0.18	+2.9
2,416,151	+		EFB2_02280	0.19	-3.0
2,416,176	+		EFB2_02280	0.22	+0.6
2,416,176	+		EFB2_02280	0.22	-1.3
2,416,176	+		EFB2_02280	0.22	+3.4
2,416,176	+		EFB2_02280	0.22	+0.9
2,416,177	-		EFB2_02280	0.22	+0.8
2,416,177	-		EFB2_02280	0.22	-1.5
2,416,177	-		EFB2_02280	0.22	+1.8
2,416,177	-		EFB2_02280	0.22	-1.7
2,416,190	+		EFB2_02280	0.23	+0.0
2,416,190	+		EFB2_02280	0.23	+1.9
2,416,190	+		EFB2_02280	0.23	-1.3
2,416,191	-		EFB2_02280	0.23	-0.7
2,416,232	+		EFB2_02280	0.27	-0.8
2,416,232	+		EFB2_02280	0.27	-1.5
2,416,232	+		EFB2_02280	0.27	-0.0
2,416,232	+		EFB2_02280	0.27	+1.1
2,416,233	-		EFB2_02280	0.27	+1.3
2,416,233	-		EFB2_02280	0.27	-0.7
2,416,266	+		EFB2_02280	0.31	+1.7
2,416,277	+		EFB2_02280	0.32	+2.8
2,416,280	+		EFB2_02280	0.32	-2.0
2,416,281	-		EFB2_02280	0.32	+0.6
2,416,281	-		EFB2_02280	0.32	-1.0
2,416,281	-		EFB2_02280	0.32	-0.2
2,416,281	-		EFB2_02280	0.32	+0.7
2,416,281	-		EFB2_02280	0.32	-0.4
2,416,281	-		EFB2_02280	0.32	-1.5
2,416,341	+		EFB2_02280	0.38	-0.0
2,416,341	+		EFB2_02280	0.38	-0.7
2,416,342	-		EFB2_02280	0.39	-0.8
2,416,352	+		EFB2_02280	0.40	+0.7
2,416,352	+		EFB2_02280	0.40	-1.1
2,416,352	+		EFB2_02280	0.40	-0.9
2,416,353	-		EFB2_02280	0.40	-0.2
2,416,353	-		EFB2_02280	0.40	-1.6
2,416,355	+		EFB2_02280	0.40	-1.1
2,416,355	+		EFB2_02280	0.40	-0.5
2,416,355	+		EFB2_02280	0.40	-0.4
2,416,361	+		EFB2_02280	0.40	+0.2
2,416,361	+		EFB2_02280	0.40	-0.2
2,416,361	+		EFB2_02280	0.40	-0.8
2,416,361	+		EFB2_02280	0.40	+1.8
2,416,361	+		EFB2_02280	0.40	+2.7
2,416,361	+		EFB2_02280	0.40	+1.1
2,416,361	+		EFB2_02280	0.40	+1.3
2,416,361	+		EFB2_02280	0.40	-0.2
2,416,361	+		EFB2_02280	0.40	+2.7
2,416,361	+		EFB2_02280	0.40	-1.5
2,416,361	+		EFB2_02280	0.40	+0.1
2,416,362	-		EFB2_02280	0.41	-0.4
2,416,362	-		EFB2_02280	0.41	-0.7
2,416,362	-		EFB2_02280	0.41	+2.3
2,416,362	-		EFB2_02280	0.41	-1.7
2,416,418	+		EFB2_02280	0.46	+1.8
2,416,426	-		EFB2_02280	0.47	-1.5
2,416,439	+		EFB2_02280	0.48	+1.5
2,416,439	+		EFB2_02280	0.48	-0.5
2,416,440	-		EFB2_02280	0.49	+0.6
2,416,452	+		EFB2_02280	0.50	+1.8
2,416,453	-		EFB2_02280	0.50	+3.8
2,416,456	+		EFB2_02280	0.50	-0.5
2,416,456	+		EFB2_02280	0.50	+0.6
2,416,456	+		EFB2_02280	0.50	+2.8
2,416,457	-		EFB2_02280	0.50	-0.0
2,416,478	+		EFB2_02280	0.52	-0.5
2,416,478	+		EFB2_02280	0.52	-1.4
2,416,478	+		EFB2_02280	0.52	+1.8
2,416,478	+		EFB2_02280	0.52	+0.2
2,416,478	+		EFB2_02280	0.52	+0.5
2,416,492	+		EFB2_02280	0.54	+3.5
2,416,492	+		EFB2_02280	0.54	+2.1
2,416,492	+		EFB2_02280	0.54	-2.0
2,416,493	-		EFB2_02280	0.54	-0.2
2,416,520	+		EFB2_02280	0.57	-1.0
2,416,599	+		EFB2_02280	0.65	-0.3
2,416,599	+		EFB2_02280	0.65	+2.3
2,416,599	+		EFB2_02280	0.65	-2.5
2,416,599	+		EFB2_02280	0.65	+0.8
2,416,599	+		EFB2_02280	0.65	-1.2
2,416,599	+		EFB2_02280	0.65	-1.3
2,416,599	+		EFB2_02280	0.65	-0.7
2,416,599	+		EFB2_02280	0.65	-0.9
2,416,599	+		EFB2_02280	0.65	-0.4
2,416,599	+		EFB2_02280	0.65	+0.3
2,416,599	+		EFB2_02280	0.65	-1.0
2,416,599	+		EFB2_02280	0.65	-1.3
2,416,599	+		EFB2_02280	0.65	+3.6
2,416,599	+		EFB2_02280	0.65	-0.8
2,416,599	+		EFB2_02280	0.65	+1.5
2,416,599	+		EFB2_02280	0.65	+0.1
2,416,600	-		EFB2_02280	0.65	+0.8
2,416,600	-		EFB2_02280	0.65	+3.1
2,416,600	-		EFB2_02280	0.65	+1.0
2,416,600	-		EFB2_02280	0.65	-1.0
2,416,640	+		EFB2_02280	0.69	-0.2
2,416,749	+		EFB2_02280	0.80	-0.8
2,416,749	+		EFB2_02280	0.80	-0.0
2,416,749	+		EFB2_02280	0.80	+1.1
2,416,749	+		EFB2_02280	0.80	+2.8
2,416,749	+		EFB2_02280	0.80	+0.2
2,416,749	+		EFB2_02280	0.80	+3.3
2,416,749	+		EFB2_02280	0.80	-1.3
2,416,749	+		EFB2_02280	0.80	+2.0
2,416,750	-		EFB2_02280	0.80	+0.8
2,416,750	-		EFB2_02280	0.80	-1.1
2,416,784	+		EFB2_02280	0.84	+1.1
2,416,787	+		EFB2_02280	0.84	-0.8
2,416,787	+		EFB2_02280	0.84	-1.2
2,416,787	+		EFB2_02280	0.84	-0.5
2,416,787	+		EFB2_02280	0.84	-1.2
2,416,787	+		EFB2_02280	0.84	+1.4
2,416,788	-		EFB2_02280	0.84	+2.8
2,416,841	+		EFB2_02280	0.89	+0.8
2,416,841	+		EFB2_02280	0.89	-1.4
2,416,842	-		EFB2_02280	0.90	-1.7
2,416,856	+				-1.4
2,416,856	+				-0.9
2,416,856	+				-1.0
2,416,856	+				+2.8
2,416,857	-				-0.7
2,416,914	+				+0.8
2,416,914	+				+1.3
2,416,914	+				-1.7
2,416,960	+				+2.2
2,416,960	+				-1.1
2,416,960	+				-2.0
2,416,961	-				+2.8
2,416,961	-				+1.1
2,416,966	+				-0.5
2,416,966	+				+0.2
2,416,966	+				+1.9
2,416,966	+				+0.3
2,416,974	-				-1.3
2,416,991	+				-0.8
2,417,031	+				+1.0
2,417,031	+				+1.8
2,417,031	+				-0.7
2,417,031	+				-2.2
2,417,041	+				+2.3
2,417,041	+				+1.8
2,417,042	-				+0.8
2,417,042	-				-1.4
2,417,050	+				+1.1
2,417,072	+		EFB2_02281	0.12	-0.2
2,417,072	+		EFB2_02281	0.12	+0.7
2,417,072	+		EFB2_02281	0.12	+0.2
2,417,072	+		EFB2_02281	0.12	+1.2
2,417,072	+		EFB2_02281	0.12	-2.1
2,417,073	-		EFB2_02281	0.12	+3.8
2,417,121	+		EFB2_02281	0.21	+2.0
2,417,132	+		EFB2_02281	0.23	+0.5
2,417,132	+		EFB2_02281	0.23	-0.9
2,417,132	+		EFB2_02281	0.23	+2.0
2,417,132	+		EFB2_02281	0.23	-0.2
2,417,132	+		EFB2_02281	0.23	+1.8
2,417,132	+		EFB2_02281	0.23	+0.3
2,417,132	+		EFB2_02281	0.23	+1.2
2,417,132	+		EFB2_02281	0.23	-0.1
2,417,133	-		EFB2_02281	0.23	+1.3
2,417,133	-		EFB2_02281	0.23	-0.2
2,417,133	-		EFB2_02281	0.23	-0.0
2,417,249	+		EFB2_02281	0.44	-0.5
2,417,249	+		EFB2_02281	0.44	+3.8
2,417,249	+		EFB2_02281	0.44	+0.5
2,417,290	+		EFB2_02281	0.51	-1.0
2,417,290	+		EFB2_02281	0.51	+1.3
2,417,290	+		EFB2_02281	0.51	-2.1
2,417,302	+		EFB2_02281	0.54	+2.1
2,417,303	-		EFB2_02281	0.54	-1.2
2,417,327	+		EFB2_02281	0.58	-0.7
2,417,384	+		EFB2_02281	0.68	-0.2
2,417,384	+		EFB2_02281	0.68	+1.3
2,417,421	-		EFB2_02281	0.75	-0.7
2,417,432	-		EFB2_02281	0.77	-0.5
2,417,500	+		EFB2_02281	0.89	-2.2
2,417,500	+		EFB2_02281	0.89	+0.7
2,417,536	+				-1.5
2,417,536	+				-0.8
2,417,555	+				+0.9
2,417,555	+				-1.1
2,417,555	+				-0.8
2,417,555	+				-1.6
2,417,555	+				-0.1
2,417,555	+				-0.7
2,417,556	-				+1.2
2,417,562	+				+0.8
2,417,563	-				-1.7
2,417,563	-				+0.1
2,417,563	-				+1.8
2,417,563	-				-0.4
2,417,576	+				+2.2
2,417,576	+				+0.3
2,417,595	+				+2.1
2,417,596	-				+0.1
2,417,670	+		EFB2_02282	0.15	+0.5
2,417,676	+		EFB2_02282	0.16	-0.2
2,417,676	+		EFB2_02282	0.16	-1.3
2,417,677	-		EFB2_02282	0.16	-0.5
2,417,677	-		EFB2_02282	0.16	+2.8
2,417,681	+		EFB2_02282	0.17	-0.4
2,417,681	+		EFB2_02282	0.17	+0.7
2,417,681	+		EFB2_02282	0.17	-0.8
2,417,681	+		EFB2_02282	0.17	-1.5
2,417,682	-		EFB2_02282	0.17	+0.8
2,417,682	-		EFB2_02282	0.17	+1.8
2,417,833	+		EFB2_02282	0.37	+1.7
2,417,873	+		EFB2_02282	0.42	-1.7
2,417,873	+		EFB2_02282	0.42	-1.5
2,417,922	+		EFB2_02282	0.49	+0.1
2,417,922	+		EFB2_02282	0.49	-0.8
2,417,922	+		EFB2_02282	0.49	+0.8
2,417,923	-		EFB2_02282	0.49	+1.8
2,417,923	-		EFB2_02282	0.49	+2.3
2,417,923	-		EFB2_02282	0.49	+1.5
2,417,923	-		EFB2_02282	0.49	-2.3
2,417,923	-		EFB2_02282	0.49	-0.7
2,417,960	+		EFB2_02282	0.54	+3.4
2,417,960	+		EFB2_02282	0.54	+0.5
2,417,960	+		EFB2_02282	0.54	-0.9
2,417,960	+		EFB2_02282	0.54	-1.1
2,417,960	+		EFB2_02282	0.54	-1.7
2,417,961	-		EFB2_02282	0.54	+1.4
2,417,961	-		EFB2_02282	0.54	-1.9
2,417,961	-		EFB2_02282	0.54	-2.1
2,417,961	-		EFB2_02282	0.54	-1.8
2,418,071	+		EFB2_02282	0.69	-0.7
2,418,072	-		EFB2_02282	0.69	-0.7
2,418,072	-		EFB2_02282	0.69	-1.5
2,418,173	+		EFB2_02282	0.82	+0.5
2,418,173	+		EFB2_02282	0.82	+0.6
2,418,173	+		EFB2_02282	0.82	+0.5
2,418,173	+		EFB2_02282	0.82	-1.1
2,418,174	-		EFB2_02282	0.82	+3.6
2,418,245	-				-1.5
2,418,245	-				-0.7
2,418,313	+				-0.4
2,418,313	+				+0.2
2,418,313	+				+1.9
2,418,313	+				+2.1
2,418,314	-				-0.5
2,418,314	-				-1.7
2,418,314	-				-0.5
2,418,314	-				-0.9
2,418,316	+				+1.9
2,418,316	+				+0.8
2,418,316	+				+0.4
2,418,317	-				-1.5
2,418,336	+				-0.7
2,418,336	+				-0.7
2,418,336	+				+0.5
2,418,337	-				+0.5
2,418,337	-				+0.2
2,418,337	-				-1.8
2,418,337	-				+0.8
2,418,344	+				+2.8
2,418,349	+				-2.2
2,418,398	+				+1.4
2,418,431	+		EFB2_02283	0.10	-2.1
2,418,431	+		EFB2_02283	0.10	+0.0
2,418,431	+		EFB2_02283	0.10	-0.0
2,418,440	+		EFB2_02283	0.12	+2.7
2,418,440	+		EFB2_02283	0.12	-2.7
2,418,440	+		EFB2_02283	0.12	-0.9
2,418,480	-		EFB2_02283	0.21	-0.7
2,418,508	+		EFB2_02283	0.27	-1.4
2,418,508	+		EFB2_02283	0.27	-1.0
2,418,508	+		EFB2_02283	0.27	-0.7
2,418,508	+		EFB2_02283	0.27	-0.8
2,418,509	-		EFB2_02283	0.27	-1.4
2,418,509	-		EFB2_02283	0.27	-0.8
2,418,509	-		EFB2_02283	0.27	+0.5