Strain Fitness in Escherichia fergusonii Becca around EFB2_02064

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,213,936	+		EFB2_02063	0.18	+0.5
2,213,936	+		EFB2_02063	0.18	-1.5
2,213,936	+		EFB2_02063	0.18	-0.2
2,213,936	+		EFB2_02063	0.18	-2.1
2,213,936	+		EFB2_02063	0.18	+1.9
2,213,936	+		EFB2_02063	0.18	-2.8
2,213,936	+		EFB2_02063	0.18	-1.3
2,213,937	-		EFB2_02063	0.18	-1.6
2,213,937	-		EFB2_02063	0.18	-1.1
2,213,937	-		EFB2_02063	0.18	+1.1
2,213,937	-		EFB2_02063	0.18	+0.7
2,213,937	-		EFB2_02063	0.18	+1.1
2,213,937	-		EFB2_02063	0.18	+2.7
2,213,937	-		EFB2_02063	0.18	-3.0
2,213,937	-		EFB2_02063	0.18	+1.6
2,213,939	+		EFB2_02063	0.18	-0.6
2,213,939	+		EFB2_02063	0.18	-2.4
2,213,939	+		EFB2_02063	0.18	-0.6
2,213,939	+		EFB2_02063	0.18	+0.0
2,213,939	+		EFB2_02063	0.18	-1.4
2,213,940	-		EFB2_02063	0.18	+0.1
2,213,940	-		EFB2_02063	0.18	-1.4
2,213,972	+		EFB2_02063	0.21	+1.0
2,213,972	+		EFB2_02063	0.21	+1.5
2,213,973	-		EFB2_02063	0.21	-1.3
2,214,041	+		EFB2_02063	0.27	+0.3
2,214,041	+		EFB2_02063	0.27	+1.0
2,214,041	+		EFB2_02063	0.27	-0.9
2,214,041	+		EFB2_02063	0.27	-2.0
2,214,070	+		EFB2_02063	0.30	-1.0
2,214,070	+		EFB2_02063	0.30	+2.1
2,214,071	-		EFB2_02063	0.30	+0.3
2,214,074	+		EFB2_02063	0.30	-1.7
2,214,128	+		EFB2_02063	0.35	+0.4
2,214,129	-		EFB2_02063	0.35	-0.5
2,214,129	-		EFB2_02063	0.35	-0.1
2,214,247	+		EFB2_02063	0.45	-2.8
2,214,279	-		EFB2_02063	0.48	-0.3
2,214,301	+		EFB2_02063	0.50	+0.4
2,214,301	+		EFB2_02063	0.50	-0.8
2,214,302	-		EFB2_02063	0.50	-0.8
2,214,302	-		EFB2_02063	0.50	-0.9
2,214,446	+		EFB2_02063	0.62	+0.3
2,214,446	+		EFB2_02063	0.62	+0.0
2,214,447	-		EFB2_02063	0.62	-0.7
2,214,447	-		EFB2_02063	0.62	+1.3
2,214,561	+		EFB2_02063	0.72	+2.4
2,214,600	-		EFB2_02063	0.76	-1.0
2,214,600	-		EFB2_02063	0.76	+0.4
2,214,650	+		EFB2_02063	0.80	-2.4
2,214,650	+		EFB2_02063	0.80	-1.6
2,214,694	-		EFB2_02063	0.84	-1.7
2,214,735	+		EFB2_02063	0.87	+0.3
2,214,735	+		EFB2_02063	0.87	-0.3
2,214,736	-		EFB2_02063	0.88	-2.5
2,214,736	-		EFB2_02063	0.88	+0.5
2,214,811	+				-1.6
2,214,811	+				+3.9
2,214,811	+				-0.8
2,214,811	+				+0.3
2,214,811	+				+1.1
2,214,812	-				-2.2
2,214,812	-				-1.0
2,214,812	-				+0.6
2,214,812	-				+0.7
2,214,812	-				-1.2
2,214,818	+				+2.4
2,214,818	+				+0.4
2,214,818	+				+1.0
2,214,818	+				+1.1
2,214,818	+				+0.5
2,214,818	+				+0.6
2,214,818	+				+0.5
2,214,818	+				+0.7
2,214,818	+				+1.0
2,214,819	-				-0.1
2,214,819	-				-0.4
2,214,819	-				+0.5
2,214,819	-				-0.9
2,214,819	-				+2.7
2,214,819	-				+2.7
2,214,819	-				-1.2
2,214,877	-				-1.0
2,214,978	-				-0.9
2,215,015	-				-1.6
2,215,110	+		EFB2_02064	0.11	+1.5
2,215,110	+		EFB2_02064	0.11	-2.1
2,215,110	+		EFB2_02064	0.11	-2.1
2,215,134	+		EFB2_02064	0.13	-1.6
2,215,134	+		EFB2_02064	0.13	+1.6
2,215,134	+		EFB2_02064	0.13	-2.1
2,215,134	+		EFB2_02064	0.13	+0.8
2,215,134	+		EFB2_02064	0.13	-0.3
2,215,135	-		EFB2_02064	0.13	+0.3
2,215,135	-		EFB2_02064	0.13	-0.1
2,215,153	-		EFB2_02064	0.14	-0.9
2,215,173	+		EFB2_02064	0.15	-0.9
2,215,173	+		EFB2_02064	0.15	+0.7
2,215,284	+		EFB2_02064	0.20	+0.1
2,215,284	+		EFB2_02064	0.20	-0.3
2,215,284	+		EFB2_02064	0.20	-0.6
2,215,284	+		EFB2_02064	0.20	+0.6
2,215,284	+		EFB2_02064	0.20	-1.5
2,215,285	-		EFB2_02064	0.20	+0.6
2,215,290	+		EFB2_02064	0.20	-1.1
2,215,312	-		EFB2_02064	0.21	-0.3
2,215,312	-		EFB2_02064	0.21	+0.0
2,215,347	+		EFB2_02064	0.23	-0.9
2,215,347	+		EFB2_02064	0.23	-0.1
2,215,347	+		EFB2_02064	0.23	+0.5
2,215,348	-		EFB2_02064	0.23	-1.1
2,215,348	-		EFB2_02064	0.23	+0.1
2,215,348	-		EFB2_02064	0.23	-2.4
2,215,383	+		EFB2_02064	0.25	-0.5
2,215,383	+		EFB2_02064	0.25	-0.4
2,215,476	+		EFB2_02064	0.29	+0.3
2,215,476	+		EFB2_02064	0.29	-2.7
2,215,476	+		EFB2_02064	0.29	+0.3
2,215,476	+		EFB2_02064	0.29	+0.9
2,215,476	+		EFB2_02064	0.29	-0.1
2,215,476	+		EFB2_02064	0.29	-0.4
2,215,477	-		EFB2_02064	0.29	-1.3
2,215,477	-		EFB2_02064	0.29	-1.4
2,215,477	-		EFB2_02064	0.29	-2.2
2,215,524	+		EFB2_02064	0.31	-0.1
2,215,594	+		EFB2_02064	0.35	-0.9
2,215,594	+		EFB2_02064	0.35	+0.3
2,215,594	+		EFB2_02064	0.35	+0.5
2,215,594	+		EFB2_02064	0.35	+0.5
2,215,594	+		EFB2_02064	0.35	-2.2
2,215,594	+		EFB2_02064	0.35	+1.7
2,215,594	+		EFB2_02064	0.35	+0.5
2,215,595	-		EFB2_02064	0.35	-3.5
2,215,595	-		EFB2_02064	0.35	+0.1
2,215,595	-		EFB2_02064	0.35	+2.4
2,215,595	-		EFB2_02064	0.35	-0.5
2,215,595	-		EFB2_02064	0.35	+0.9
2,215,595	-		EFB2_02064	0.35	-1.0
2,215,595	-		EFB2_02064	0.35	+0.4
2,215,595	-		EFB2_02064	0.35	-0.6
2,215,595	-		EFB2_02064	0.35	-0.1
2,215,595	-		EFB2_02064	0.35	+0.1
2,215,595	-		EFB2_02064	0.35	-0.9
2,215,595	-		EFB2_02064	0.35	+0.4
2,215,596	+		EFB2_02064	0.35	+1.6
2,215,596	+		EFB2_02064	0.35	+0.6
2,215,596	+		EFB2_02064	0.35	-1.0
2,215,596	+		EFB2_02064	0.35	+0.2
2,215,596	+		EFB2_02064	0.35	+1.0
2,215,596	+		EFB2_02064	0.35	+0.7
2,215,596	+		EFB2_02064	0.35	-1.4
2,215,596	+		EFB2_02064	0.35	-2.4
2,215,596	+		EFB2_02064	0.35	+1.1
2,215,596	+		EFB2_02064	0.35	+0.7
2,215,596	+		EFB2_02064	0.35	+0.5
2,215,596	+		EFB2_02064	0.35	-0.2
2,215,596	+		EFB2_02064	0.35	+0.4
2,215,596	+		EFB2_02064	0.35	-1.3
2,215,596	+		EFB2_02064	0.35	+1.9
2,215,596	+		EFB2_02064	0.35	-1.8
2,215,596	+		EFB2_02064	0.35	+0.3
2,215,596	+		EFB2_02064	0.35	+1.2
2,215,596	+		EFB2_02064	0.35	-2.3
2,215,597	-		EFB2_02064	0.35	-1.0
2,215,597	-		EFB2_02064	0.35	-1.6
2,215,597	-		EFB2_02064	0.35	-1.6
2,215,597	-		EFB2_02064	0.35	-2.3
2,215,597	-		EFB2_02064	0.35	-0.6
2,215,597	-		EFB2_02064	0.35	+1.8
2,215,597	-		EFB2_02064	0.35	+0.7
2,215,597	-		EFB2_02064	0.35	-2.2
2,215,597	-		EFB2_02064	0.35	+1.0
2,215,597	-		EFB2_02064	0.35	-1.0
2,215,597	-		EFB2_02064	0.35	-1.6
2,215,597	-		EFB2_02064	0.35	+1.1
2,215,597	-		EFB2_02064	0.35	-0.8
2,215,597	-		EFB2_02064	0.35	-1.3
2,215,597	-		EFB2_02064	0.35	+1.4
2,215,597	-		EFB2_02064	0.35	+2.5
2,215,601	+		EFB2_02064	0.35	+0.7
2,215,601	+		EFB2_02064	0.35	-0.9
2,215,602	-		EFB2_02064	0.35	-1.2
2,215,675	-		EFB2_02064	0.39	-1.0
2,215,743	+		EFB2_02064	0.42	-1.9
2,215,743	+		EFB2_02064	0.42	-1.6
2,215,743	+		EFB2_02064	0.42	-1.4
2,215,743	+		EFB2_02064	0.42	-1.1
2,215,743	+		EFB2_02064	0.42	-0.5
2,215,743	+		EFB2_02064	0.42	-1.2
2,215,743	+		EFB2_02064	0.42	+1.3
2,215,743	+		EFB2_02064	0.42	-0.8
2,215,743	+		EFB2_02064	0.42	-0.2
2,215,744	-		EFB2_02064	0.42	-0.9
2,215,744	-		EFB2_02064	0.42	-1.8
2,215,748	+		EFB2_02064	0.42	-1.7
2,215,748	+		EFB2_02064	0.42	-1.1
2,215,748	+		EFB2_02064	0.42	-1.0
2,215,748	+		EFB2_02064	0.42	+0.4
2,215,748	+		EFB2_02064	0.42	+1.1
2,215,748	+		EFB2_02064	0.42	-0.8
2,215,749	-		EFB2_02064	0.42	+1.9
2,215,749	-		EFB2_02064	0.42	+0.8
2,215,749	-		EFB2_02064	0.42	+0.4
2,215,749	-		EFB2_02064	0.42	+0.1
2,215,749	-		EFB2_02064	0.42	+1.1
2,215,749	-		EFB2_02064	0.42	+1.0
2,215,751	+		EFB2_02064	0.42	+3.5
2,215,751	+		EFB2_02064	0.42	-1.5
2,215,751	+		EFB2_02064	0.42	-1.0
2,215,751	+		EFB2_02064	0.42	-0.9
2,215,751	+		EFB2_02064	0.42	-1.1
2,215,751	+		EFB2_02064	0.42	-0.5
2,215,752	-		EFB2_02064	0.42	-1.7
2,215,752	-		EFB2_02064	0.42	+4.5
2,215,908	+		EFB2_02064	0.50	+1.7
2,215,908	+		EFB2_02064	0.50	+1.4
2,215,908	+		EFB2_02064	0.50	-0.6
2,215,908	+		EFB2_02064	0.50	-0.9
2,215,908	+		EFB2_02064	0.50	+2.4
2,215,908	+		EFB2_02064	0.50	+1.1
2,215,908	+		EFB2_02064	0.50	-3.1
2,215,908	+		EFB2_02064	0.50	+1.7
2,215,909	-		EFB2_02064	0.50	+1.5
2,215,909	-		EFB2_02064	0.50	-1.1
2,215,909	-		EFB2_02064	0.50	+2.5
2,215,911	+		EFB2_02064	0.50	-1.3
2,215,912	-		EFB2_02064	0.50	+3.3
2,215,912	-		EFB2_02064	0.50	-1.7
2,215,940	+		EFB2_02064	0.51	-1.4
2,215,940	+		EFB2_02064	0.51	-2.2
2,215,940	+		EFB2_02064	0.51	-3.1
2,215,940	+		EFB2_02064	0.51	+0.9
2,215,940	+		EFB2_02064	0.51	+1.9
2,215,940	+		EFB2_02064	0.51	+2.7
2,215,940	+		EFB2_02064	0.51	-0.1
2,215,940	+		EFB2_02064	0.51	-0.1
2,215,940	+		EFB2_02064	0.51	+1.4
2,215,940	+		EFB2_02064	0.51	-0.8
2,215,940	+		EFB2_02064	0.51	-0.6
2,215,940	+		EFB2_02064	0.51	+1.2
2,215,940	+		EFB2_02064	0.51	+2.7
2,215,940	+		EFB2_02064	0.51	-1.8
2,215,940	+		EFB2_02064	0.51	-0.3
2,215,940	+		EFB2_02064	0.51	-1.2
2,215,940	+		EFB2_02064	0.51	-2.3
2,215,940	+		EFB2_02064	0.51	+0.2
2,215,940	+		EFB2_02064	0.51	+0.2
2,215,941	-		EFB2_02064	0.51	+0.1
2,215,941	-		EFB2_02064	0.51	+3.1
2,215,941	-		EFB2_02064	0.51	+1.3
2,215,941	-		EFB2_02064	0.51	-0.6
2,215,941	-		EFB2_02064	0.51	+0.8
2,215,941	-		EFB2_02064	0.51	+0.5
2,215,941	-		EFB2_02064	0.51	-1.0
2,215,941	-		EFB2_02064	0.51	-0.5
2,215,941	-		EFB2_02064	0.51	-0.6
2,215,941	-		EFB2_02064	0.51	+0.7
2,215,941	-		EFB2_02064	0.51	-1.6
2,216,028	+		EFB2_02064	0.56	+1.7
2,216,028	+		EFB2_02064	0.56	-0.4
2,216,028	+		EFB2_02064	0.56	-0.5
2,216,030	+		EFB2_02064	0.56	+0.1
2,216,030	+		EFB2_02064	0.56	+2.2
2,216,030	+		EFB2_02064	0.56	+2.6
2,216,030	+		EFB2_02064	0.56	-2.9
2,216,030	+		EFB2_02064	0.56	+0.1
2,216,030	+		EFB2_02064	0.56	-0.1
2,216,030	+		EFB2_02064	0.56	+0.8
2,216,030	+		EFB2_02064	0.56	-1.5
2,216,030	+		EFB2_02064	0.56	-0.3
2,216,030	+		EFB2_02064	0.56	+0.6
2,216,031	-		EFB2_02064	0.56	-2.6
2,216,100	+		EFB2_02064	0.59	+2.7
2,216,100	+		EFB2_02064	0.59	-0.8
2,216,100	+		EFB2_02064	0.59	+2.0
2,216,100	+		EFB2_02064	0.59	-0.4
2,216,150	+		EFB2_02064	0.62	-1.1
2,216,150	+		EFB2_02064	0.62	-2.2
2,216,150	+		EFB2_02064	0.62	-1.0
2,216,150	+		EFB2_02064	0.62	+0.1
2,216,151	-		EFB2_02064	0.62	-0.1
2,216,190	+		EFB2_02064	0.63	-1.6
2,216,191	-		EFB2_02064	0.63	-2.1
2,216,216	+		EFB2_02064	0.65	+1.1
2,216,216	+		EFB2_02064	0.65	-0.1
2,216,216	+		EFB2_02064	0.65	-1.0
2,216,216	+		EFB2_02064	0.65	+1.7
2,216,216	+		EFB2_02064	0.65	-0.6
2,216,259	+		EFB2_02064	0.67	-2.3
2,216,259	+		EFB2_02064	0.67	-2.0
2,216,259	+		EFB2_02064	0.67	-1.0
2,216,260	-		EFB2_02064	0.67	+1.7
2,216,260	-		EFB2_02064	0.67	-0.1
2,216,260	-		EFB2_02064	0.67	-1.4
2,216,305	+		EFB2_02064	0.69	-1.1
2,216,346	+		EFB2_02064	0.71	+0.6
2,216,347	-		EFB2_02064	0.71	-1.1
2,216,347	-		EFB2_02064	0.71	-1.2
2,216,358	+		EFB2_02064	0.72	-1.8
2,216,472	+		EFB2_02064	0.77	-0.7
2,216,472	+		EFB2_02064	0.77	-0.3
2,216,472	+		EFB2_02064	0.77	-2.8
2,216,473	-		EFB2_02064	0.77	-0.5
2,216,484	+		EFB2_02064	0.78	+0.7
2,216,484	+		EFB2_02064	0.78	+0.9
2,216,530	-		EFB2_02064	0.80	-0.6
2,216,591	+		EFB2_02064	0.83	-2.0
2,216,591	+		EFB2_02064	0.83	+0.7
2,216,591	+		EFB2_02064	0.83	-0.6
2,216,592	-		EFB2_02064	0.83	-0.5
2,216,667	+		EFB2_02064	0.86	-1.4
2,216,679	+		EFB2_02064	0.87	+0.6
2,216,703	-		EFB2_02064	0.88	-1.5
2,216,840	+				+0.6
2,216,841	-				-1.0
2,216,900	+				-1.5
2,216,900	+				+0.7
2,216,900	+				-1.5
2,216,900	+				+3.7
2,216,901	-				+3.7
2,216,901	-				-0.3
2,216,901	-				-0.1
2,216,916	+				+1.2
2,216,916	+				-0.6
2,216,916	+				-0.8
2,216,917	-				+2.7
2,216,917	-				+2.1
2,216,917	-				-1.6
2,216,917	-				-2.7
2,216,917	-				-1.8
2,216,917	-				+2.2
2,216,917	-				-0.5
2,216,922	+				+0.4
2,216,922	+				-0.8
2,216,923	-				-0.4
2,216,947	+				-2.4
2,216,947	+				+2.0
2,216,947	+				-1.2
2,216,947	+				-0.5
2,216,948	-				-1.7
2,216,948	-				-1.5
2,216,959	+				+2.6
2,216,959	+				+1.9
2,216,959	+				+0.1
2,216,960	-				-0.6
2,216,960	-				+0.7
2,216,960	-				+0.1
2,216,962	+				+0.1
2,216,962	+				+0.9
2,216,963	-				+1.1
2,216,963	-				-1.8
2,216,968	+				+0.6
2,216,968	+				-1.1
2,216,968	+				-0.3
2,216,968	+				-1.4
2,216,969	-				+0.4
2,216,969	-				-0.4
2,216,969	-				-1.1
2,216,969	-				+0.7
2,216,969	-				+0.4
2,216,971	+				-2.5
2,216,971	+				+0.1
2,216,971	+				-1.3
2,216,971	+				-1.6
2,216,971	+				+1.9
2,216,971	+				-1.8
2,216,971	+				+1.6
2,216,972	-				-0.6
2,216,972	-				+2.7
2,217,023	+		EFB2_02065	0.19	-0.8
2,217,023	+		EFB2_02065	0.19	-2.5
2,217,040	+		EFB2_02065	0.23	-2.4
2,217,040	+		EFB2_02065	0.23	-0.8
2,217,040	+		EFB2_02065	0.23	+1.4
2,217,081	-		EFB2_02065	0.34	+2.3
2,217,197	-		EFB2_02065	0.63	+1.0
2,217,197	-		EFB2_02065	0.63	+0.7
2,217,261	-		EFB2_02065	0.79	-0.7
2,217,289	+		EFB2_02065	0.87	-0.3
2,217,329	-				-1.6
2,217,384	+				-1.6
2,217,384	+				+4.0
2,217,384	+				+1.1
2,217,384	+				+1.6
2,217,385	-				+0.2
2,217,385	-				-2.1
2,217,386	+				+0.7
2,217,395	+				-0.6
2,217,395	+				+0.4
2,217,395	+				-1.6
2,217,395	+				-0.1
2,217,395	+				-3.0
2,217,395	+				+1.8
2,217,395	+				-0.3
2,217,395	+				+1.2
2,217,395	+				-0.9
2,217,395	+				-0.1
2,217,396	-				+0.4
2,217,396	-				+1.1
2,217,396	-				-0.5
2,217,396	-				-1.1
2,217,396	-				-2.6
2,217,396	-				-1.8
2,217,396	-				+1.5
2,217,396	-				-1.1
2,217,396	-				-1.5