Strain Fitness in Escherichia fergusonii Becca around EFB2_01757

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,857,596	-		EFB2_01755	0.74	+0.9
1,857,596	-		EFB2_01755	0.74	+2.9
1,857,617	-		EFB2_01755	0.77	-1.8
1,857,617	-		EFB2_01755	0.77	-2.1
1,857,617	-		EFB2_01755	0.77	-1.3
1,857,629	-		EFB2_01755	0.78	-1.8
1,857,649	+		EFB2_01755	0.81	-1.1
1,857,649	+		EFB2_01755	0.81	+0.4
1,857,649	+		EFB2_01755	0.81	-1.3
1,857,649	+		EFB2_01755	0.81	+1.8
1,857,649	+		EFB2_01755	0.81	-0.4
1,857,649	+		EFB2_01755	0.81	-0.5
1,857,650	-		EFB2_01755	0.81	+0.3
1,857,650	-		EFB2_01755	0.81	-1.0
1,857,650	-		EFB2_01755	0.81	+3.5
1,857,650	-		EFB2_01755	0.81	+3.2
1,857,650	-		EFB2_01755	0.81	+0.1
1,857,650	-		EFB2_01755	0.81	-1.8
1,857,650	-		EFB2_01755	0.81	-0.8
1,857,650	-		EFB2_01755	0.81	-0.8
1,857,650	-		EFB2_01755	0.81	+0.5
1,857,650	-		EFB2_01755	0.81	+0.5
1,857,652	+		EFB2_01755	0.81	+1.4
1,857,652	+		EFB2_01755	0.81	-0.3
1,857,653	-		EFB2_01755	0.81	+3.0
1,857,653	-		EFB2_01755	0.81	-2.3
1,857,653	-		EFB2_01755	0.81	+0.5
1,857,653	-		EFB2_01755	0.81	+1.3
1,857,729	+				-1.8
1,857,730	-				-1.4
1,857,747	+				+1.4
1,857,747	+				+0.7
1,857,748	-				+0.5
1,857,757	-				+0.3
1,857,757	-				+1.8
1,857,757	-				-1.8
1,857,757	-				+2.0
1,857,798	+				-0.3
1,857,802	+				-0.0
1,857,803	-				-3.2
1,857,811	+				+0.6
1,857,812	-				-2.6
1,857,812	-				+1.0
1,857,815	+				+1.1
1,857,815	+				+2.4
1,857,815	+				+1.3
1,857,815	+				+2.1
1,857,815	+				-0.8
1,857,815	+				-0.1
1,857,828	+				-0.7
1,857,828	+				+1.6
1,857,828	+				-2.2
1,857,828	+				+0.9
1,857,830	+				-1.9
1,857,830	+				+0.4
1,857,830	+				+3.1
1,857,830	+				+0.3
1,857,830	+				-1.8
1,857,830	+				+0.3
1,857,831	-				+1.7
1,857,880	-				-0.5
1,857,909	+				-0.2
1,857,937	+				-0.8
1,857,937	+				+2.2
1,857,937	+				+1.9
1,857,938	-				-2.6
1,857,938	-				-0.3
1,857,938	-				+0.6
1,857,938	-				-2.0
1,857,938	-				-0.4
1,857,938	-				+1.0
1,857,938	-				-0.4
1,857,939	+				+0.7
1,857,940	-		EFB2_01756	0.10	-1.0
1,857,940	-		EFB2_01756	0.10	-0.6
1,857,940	-		EFB2_01756	0.10	+0.5
1,857,940	-		EFB2_01756	0.10	-2.9
1,857,942	+		EFB2_01756	0.10	-1.9
1,857,942	+		EFB2_01756	0.10	+1.0
1,857,942	+		EFB2_01756	0.10	-0.8
1,857,943	-		EFB2_01756	0.10	+0.2
1,857,943	-		EFB2_01756	0.10	-1.0
1,857,943	-		EFB2_01756	0.10	+1.3
1,857,999	+		EFB2_01756	0.18	-3.0
1,857,999	+		EFB2_01756	0.18	-1.5
1,858,000	-		EFB2_01756	0.18	+1.3
1,858,000	-		EFB2_01756	0.18	+1.1
1,858,000	-		EFB2_01756	0.18	+1.8
1,858,022	+		EFB2_01756	0.21	-0.2
1,858,022	+		EFB2_01756	0.21	+0.2
1,858,023	-		EFB2_01756	0.21	-1.1
1,858,023	-		EFB2_01756	0.21	+1.5
1,858,023	-		EFB2_01756	0.21	+0.8
1,858,142	-		EFB2_01756	0.37	+2.5
1,858,182	-		EFB2_01756	0.42	+0.7
1,858,182	-		EFB2_01756	0.42	+1.3
1,858,209	-		EFB2_01756	0.46	+2.7
1,858,293	+		EFB2_01756	0.57	+1.0
1,858,293	+		EFB2_01756	0.57	+1.5
1,858,293	+		EFB2_01756	0.57	-0.1
1,858,294	-		EFB2_01756	0.57	-0.3
1,858,294	-		EFB2_01756	0.57	-1.0
1,858,299	+		EFB2_01756	0.58	+0.5
1,858,306	+		EFB2_01756	0.59	+0.5
1,858,306	+		EFB2_01756	0.59	+0.2
1,858,306	+		EFB2_01756	0.59	-0.5
1,858,306	+		EFB2_01756	0.59	+0.0
1,858,306	+		EFB2_01756	0.59	-0.3
1,858,306	+		EFB2_01756	0.59	-0.3
1,858,307	-		EFB2_01756	0.59	-1.9
1,858,307	-		EFB2_01756	0.59	-1.2
1,858,307	-		EFB2_01756	0.59	-0.1
1,858,307	-		EFB2_01756	0.59	+0.7
1,858,358	+		EFB2_01756	0.66	-0.4
1,858,358	+		EFB2_01756	0.66	-2.4
1,858,358	+		EFB2_01756	0.66	+2.0
1,858,358	+		EFB2_01756	0.66	-1.8
1,858,358	+		EFB2_01756	0.66	+1.5
1,858,358	+		EFB2_01756	0.66	-2.2
1,858,358	+		EFB2_01756	0.66	+0.7
1,858,358	+		EFB2_01756	0.66	-0.1
1,858,359	-		EFB2_01756	0.66	-0.8
1,858,359	-		EFB2_01756	0.66	+0.5
1,858,359	-		EFB2_01756	0.66	-0.1
1,858,399	+		EFB2_01756	0.71	-2.2
1,858,399	+		EFB2_01756	0.71	-2.6
1,858,400	-		EFB2_01756	0.72	+1.3
1,858,400	-		EFB2_01756	0.72	-1.7
1,858,431	+		EFB2_01756	0.76	-0.8
1,858,431	+		EFB2_01756	0.76	-0.5
1,858,431	+		EFB2_01756	0.76	+1.6
1,858,482	+		EFB2_01756	0.83	+0.5
1,858,482	+		EFB2_01756	0.83	-1.3
1,858,483	-		EFB2_01756	0.83	+0.8
1,858,490	+		EFB2_01756	0.84	-1.4
1,858,490	+		EFB2_01756	0.84	-2.3
1,858,491	-		EFB2_01756	0.84	-1.1
1,858,502	+		EFB2_01756	0.85	-1.8
1,858,552	-				-2.2
1,858,558	+				-1.0
1,858,559	-				-0.1
1,858,559	-				-1.5
1,858,559	-				+2.4
1,858,559	-				-0.2
1,858,559	-				+0.6
1,858,559	-				-2.6
1,858,586	+				-1.3
1,858,586	+				-0.5
1,858,586	+				+1.1
1,858,587	-				-2.7
1,858,587	-				-0.3
1,858,587	-				-2.8
1,858,587	-				-1.5
1,858,589	-				+1.2
1,858,609	+				+0.4
1,858,609	+				-1.6
1,858,609	+				-0.2
1,858,609	+				-0.2
1,858,609	+				-2.0
1,858,609	+				-1.1
1,858,609	+				+0.3
1,858,610	-				-2.5
1,858,610	-				-0.3
1,858,610	-				+0.4
1,858,610	-				+0.5
1,858,610	-				+2.8
1,858,610	-				-1.1
1,858,610	-				-0.5
1,858,610	-				-0.7
1,858,681	+				+0.7
1,858,681	+				-2.0
1,858,681	+				+0.3
1,858,682	-		EFB2_01757	0.10	+2.7
1,858,682	-		EFB2_01757	0.10	-0.2
1,858,684	+		EFB2_01757	0.10	-1.2
1,858,684	+		EFB2_01757	0.10	-2.0
1,858,685	-		EFB2_01757	0.10	+0.7
1,858,726	+		EFB2_01757	0.15	-1.2
1,858,726	+		EFB2_01757	0.15	+1.1
1,858,726	+		EFB2_01757	0.15	-0.6
1,858,726	+		EFB2_01757	0.15	+1.5
1,858,726	+		EFB2_01757	0.15	-2.3
1,858,726	+		EFB2_01757	0.15	-1.7
1,858,727	-		EFB2_01757	0.15	-1.8
1,858,765	+		EFB2_01757	0.19	+3.2
1,858,765	+		EFB2_01757	0.19	-0.5
1,858,765	+		EFB2_01757	0.19	+2.3
1,858,766	-		EFB2_01757	0.19	-1.3
1,858,766	-		EFB2_01757	0.19	+1.4
1,858,817	+		EFB2_01757	0.24	-2.3
1,858,817	+		EFB2_01757	0.24	+2.0
1,858,817	+		EFB2_01757	0.24	+1.1
1,858,817	+		EFB2_01757	0.24	+1.4
1,858,818	-		EFB2_01757	0.24	-1.4
1,858,818	-		EFB2_01757	0.24	-1.8
1,858,818	-		EFB2_01757	0.24	+0.8
1,858,818	-		EFB2_01757	0.24	-2.6
1,858,818	-		EFB2_01757	0.24	-1.3
1,858,894	+		EFB2_01757	0.32	+2.2
1,858,894	+		EFB2_01757	0.32	+0.1
1,858,894	+		EFB2_01757	0.32	-1.8
1,858,894	+		EFB2_01757	0.32	-0.1
1,858,894	+		EFB2_01757	0.32	-3.2
1,858,895	-		EFB2_01757	0.32	-0.0
1,858,895	-		EFB2_01757	0.32	-2.0
1,858,895	-		EFB2_01757	0.32	+0.5
1,858,895	-		EFB2_01757	0.32	+1.7
1,858,895	-		EFB2_01757	0.32	+1.4
1,858,895	-		EFB2_01757	0.32	-2.5
1,858,895	-		EFB2_01757	0.32	-1.8
1,858,957	+		EFB2_01757	0.39	-0.7
1,858,957	+		EFB2_01757	0.39	+1.4
1,858,958	-		EFB2_01757	0.39	-0.8
1,858,958	-		EFB2_01757	0.39	+0.8
1,858,987	+		EFB2_01757	0.42	-1.9
1,858,988	-		EFB2_01757	0.42	+0.1
1,858,988	-		EFB2_01757	0.42	-1.8
1,858,988	-		EFB2_01757	0.42	+0.2
1,858,988	-		EFB2_01757	0.42	-0.3
1,859,010	+		EFB2_01757	0.44	+0.3
1,859,010	+		EFB2_01757	0.44	+1.2
1,859,010	+		EFB2_01757	0.44	+1.0
1,859,010	+		EFB2_01757	0.44	-2.0
1,859,011	-		EFB2_01757	0.44	-0.0
1,859,011	-		EFB2_01757	0.44	-2.8
1,859,011	-		EFB2_01757	0.44	-2.7
1,859,011	-		EFB2_01757	0.44	+0.0
1,859,011	-		EFB2_01757	0.44	-2.1
1,859,011	-		EFB2_01757	0.44	-0.9
1,859,011	-		EFB2_01757	0.44	+1.1
1,859,048	-		EFB2_01757	0.48	-1.3
1,859,111	+		EFB2_01757	0.54	-0.8
1,859,112	-		EFB2_01757	0.55	-1.9
1,859,112	-		EFB2_01757	0.55	-0.1
1,859,190	+		EFB2_01757	0.63	-0.7
1,859,190	+		EFB2_01757	0.63	-2.2
1,859,190	+		EFB2_01757	0.63	-1.9
1,859,191	-		EFB2_01757	0.63	+0.4
1,859,191	-		EFB2_01757	0.63	+2.5
1,859,191	-		EFB2_01757	0.63	+0.2
1,859,191	-		EFB2_01757	0.63	-0.4
1,859,191	-		EFB2_01757	0.63	+0.2
1,859,191	-		EFB2_01757	0.63	-2.0
1,859,269	+		EFB2_01757	0.71	+2.1
1,859,269	+		EFB2_01757	0.71	+2.2
1,859,269	+		EFB2_01757	0.71	+0.0
1,859,269	+		EFB2_01757	0.71	-2.8
1,859,269	+		EFB2_01757	0.71	+2.6
1,859,269	+		EFB2_01757	0.71	-2.0
1,859,269	+		EFB2_01757	0.71	+0.0
1,859,269	+		EFB2_01757	0.71	+0.4
1,859,270	-		EFB2_01757	0.71	-0.5
1,859,270	-		EFB2_01757	0.71	-0.8
1,859,270	-		EFB2_01757	0.71	+0.7
1,859,270	-		EFB2_01757	0.71	+2.7
1,859,270	-		EFB2_01757	0.71	+4.1
1,859,270	-		EFB2_01757	0.71	+0.3
1,859,270	-		EFB2_01757	0.71	-0.5
1,859,270	-		EFB2_01757	0.71	+0.0
1,859,270	-		EFB2_01757	0.71	-2.5
1,859,270	-		EFB2_01757	0.71	+0.4
1,859,270	-		EFB2_01757	0.71	+1.5
1,859,270	-		EFB2_01757	0.71	+0.6
1,859,270	-		EFB2_01757	0.71	-0.7
1,859,363	-		EFB2_01757	0.81	-1.5
1,859,376	+		EFB2_01757	0.82	-0.7
1,859,376	+		EFB2_01757	0.82	-0.8
1,859,377	-		EFB2_01757	0.82	+2.2
1,859,450	+		EFB2_01757	0.90	+0.5
1,859,450	+		EFB2_01757	0.90	+1.2
1,859,450	+		EFB2_01757	0.90	-2.8
1,859,450	+		EFB2_01757	0.90	+0.4
1,859,451	-		EFB2_01757	0.90	-0.4
1,859,451	-		EFB2_01757	0.90	+1.0
1,859,451	-		EFB2_01757	0.90	+1.1
1,859,451	-		EFB2_01757	0.90	-0.7
1,859,451	-		EFB2_01757	0.90	+1.9
1,859,451	-		EFB2_01757	0.90	+0.3
1,859,451	-		EFB2_01757	0.90	+0.2
1,859,513	-				-1.6
1,859,513	-				+0.6
1,859,513	-				-0.4
1,859,513	-				+0.3
1,859,513	-				+1.3
1,859,533	+				-3.4
1,859,533	+				-1.6
1,859,533	+				+0.6
1,859,572	+				-0.1
1,859,573	-				+0.2
1,859,573	-				+0.9
1,859,573	-				-0.1
1,859,594	-				+1.3
1,859,616	+				-1.6
1,859,657	+		EFB2_01758	0.11	+1.4
1,859,694	-		EFB2_01758	0.15	-2.2
1,859,804	+		EFB2_01758	0.26	+1.5
1,859,804	+		EFB2_01758	0.26	+1.2
1,859,805	-		EFB2_01758	0.26	+0.7
1,859,805	-		EFB2_01758	0.26	-0.9
1,859,805	-		EFB2_01758	0.26	-0.6
1,859,805	-		EFB2_01758	0.26	+1.2
1,859,805	-		EFB2_01758	0.26	+0.2
1,859,805	-		EFB2_01758	0.26	-2.3
1,859,805	-		EFB2_01758	0.26	-0.1
1,859,805	-		EFB2_01758	0.26	+1.3
1,859,805	-		EFB2_01758	0.26	-0.6
1,859,805	-		EFB2_01758	0.26	+1.5
1,859,808	-		EFB2_01758	0.26	-2.4
1,859,813	+		EFB2_01758	0.26	-1.6
1,859,813	+		EFB2_01758	0.26	+0.2
1,859,813	+		EFB2_01758	0.26	-0.3
1,859,833	+		EFB2_01758	0.28	-0.8
1,859,833	+		EFB2_01758	0.28	-0.4
1,859,924	+		EFB2_01758	0.38	-2.0
1,859,924	+		EFB2_01758	0.38	-0.8
1,859,924	+		EFB2_01758	0.38	-1.2
1,859,924	+		EFB2_01758	0.38	+1.5
1,859,924	+		EFB2_01758	0.38	-0.5
1,859,924	+		EFB2_01758	0.38	-1.7
1,859,924	+		EFB2_01758	0.38	+0.5
1,859,924	+		EFB2_01758	0.38	+0.4
1,859,925	-		EFB2_01758	0.38	-2.0
1,859,925	-		EFB2_01758	0.38	-1.0
1,859,925	-		EFB2_01758	0.38	+1.4
1,859,925	-		EFB2_01758	0.38	-1.8
1,859,925	-		EFB2_01758	0.38	-3.3
1,859,925	-		EFB2_01758	0.38	+0.3
1,860,059	+		EFB2_01758	0.51	+0.6
1,860,059	+		EFB2_01758	0.51	+1.1
1,860,060	-		EFB2_01758	0.51	-0.3
1,860,060	-		EFB2_01758	0.51	-2.4
1,860,060	-		EFB2_01758	0.51	+0.4
1,860,060	-		EFB2_01758	0.51	-2.7
1,860,060	-		EFB2_01758	0.51	-2.2
1,860,095	+		EFB2_01758	0.55	+1.1
1,860,096	-		EFB2_01758	0.55	-2.3
1,860,096	-		EFB2_01758	0.55	-1.1
1,860,096	-		EFB2_01758	0.55	+1.4
1,860,096	-		EFB2_01758	0.55	+1.0
1,860,096	-		EFB2_01758	0.55	+0.6
1,860,096	-		EFB2_01758	0.55	-1.3
1,860,107	+		EFB2_01758	0.56	-0.9
1,860,132	+		EFB2_01758	0.58	-0.2
1,860,132	+		EFB2_01758	0.58	-2.0
1,860,132	+		EFB2_01758	0.58	+2.0
1,860,133	-		EFB2_01758	0.58	+0.6
1,860,173	+		EFB2_01758	0.62	-2.2
1,860,174	-		EFB2_01758	0.62	+1.1
1,860,215	+		EFB2_01758	0.66	-0.1
1,860,215	+		EFB2_01758	0.66	-1.1
1,860,215	+		EFB2_01758	0.66	+0.2
1,860,216	-		EFB2_01758	0.67	+1.5
1,860,216	-		EFB2_01758	0.67	-2.0
1,860,240	+		EFB2_01758	0.69	+0.2
1,860,240	+		EFB2_01758	0.69	+1.1
1,860,240	+		EFB2_01758	0.69	-0.1
1,860,240	+		EFB2_01758	0.69	-1.1
1,860,240	+		EFB2_01758	0.69	+0.5
1,860,240	+		EFB2_01758	0.69	+0.9
1,860,240	+		EFB2_01758	0.69	-0.1
1,860,240	+		EFB2_01758	0.69	-0.8
1,860,240	+		EFB2_01758	0.69	-0.1
1,860,240	+		EFB2_01758	0.69	-2.2
1,860,240	+		EFB2_01758	0.69	-0.5
1,860,241	-		EFB2_01758	0.69	-1.9
1,860,241	-		EFB2_01758	0.69	-0.8
1,860,241	-		EFB2_01758	0.69	-1.0
1,860,241	-		EFB2_01758	0.69	+0.1
1,860,241	-		EFB2_01758	0.69	-2.4
1,860,241	-		EFB2_01758	0.69	+3.1
1,860,241	-		EFB2_01758	0.69	-1.4
1,860,241	-		EFB2_01758	0.69	+1.3
1,860,241	-		EFB2_01758	0.69	-1.1
1,860,243	+		EFB2_01758	0.69	+0.6
1,860,243	+		EFB2_01758	0.69	-1.3
1,860,243	+		EFB2_01758	0.69	+2.0
1,860,244	-		EFB2_01758	0.69	-2.2
1,860,244	-		EFB2_01758	0.69	+0.5
1,860,244	-		EFB2_01758	0.69	-1.4
1,860,244	-		EFB2_01758	0.69	+0.5
1,860,244	-		EFB2_01758	0.69	+0.5
1,860,244	-		EFB2_01758	0.69	-2.2
1,860,244	-		EFB2_01758	0.69	+2.8
1,860,244	-		EFB2_01758	0.69	+0.3
1,860,254	+		EFB2_01758	0.70	+2.2
1,860,287	+		EFB2_01758	0.74	-2.0
1,860,288	-		EFB2_01758	0.74	+0.3
1,860,288	-		EFB2_01758	0.74	-2.6
1,860,290	+		EFB2_01758	0.74	+1.6
1,860,291	-		EFB2_01758	0.74	+0.7
1,860,365	+		EFB2_01758	0.81	-1.3
1,860,365	+		EFB2_01758	0.81	+0.9
1,860,366	-		EFB2_01758	0.81	-1.6
1,860,390	-		EFB2_01758	0.84	+2.3
1,860,394	+		EFB2_01758	0.84	-3.2
1,860,395	-		EFB2_01758	0.84	-1.0
1,860,521	-				+1.2
1,860,536	+				-0.7
1,860,536	+				-0.0
1,860,536	+				-1.8
1,860,536	+				-0.9
1,860,536	+				-0.1
1,860,536	+				-2.6
1,860,536	+				-0.7
1,860,537	-				-1.3
1,860,537	-				+0.5
1,860,537	-				-0.2
1,860,537	-				-1.3
1,860,537	-				-2.4